Wall clock time and date at job start Tue Mar 31 2020 10:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35794 * 116.99879 * 2 1 4 4 C 1.38542 * 120.11455 * 0.02562 * 3 2 1 5 5 C 1.38393 * 120.04440 * 180.02562 * 4 3 2 6 6 F 1.35103 * 119.86516 * 180.02562 * 5 4 3 7 7 C 1.38692 * 120.26856 * 0.02562 * 5 4 3 8 8 C 1.50705 * 119.88493 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47132 * 119.99571 * 8 7 5 10 10 C 1.52995 * 109.47192 * 240.00000 * 8 7 5 11 11 C 1.37881 * 120.23254 * 0.27333 * 7 5 4 12 12 C 1.39431 * 119.94608 * 359.45594 * 11 7 5 13 13 C 1.48143 * 120.13177 * 180.27080 * 12 11 7 14 14 C 1.40006 * 119.61686 * 47.12106 * 13 12 11 15 15 C 1.38637 * 119.46254 * 179.76925 * 14 13 12 16 16 C 1.38330 * 118.69780 * 0.49315 * 15 14 13 17 17 C 1.40668 * 119.20275 * 359.75004 * 16 15 14 18 18 C 1.41357 * 119.76433 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99767 * 0.02562 * 18 17 16 20 20 C 1.40003 * 120.00150 * 180.02562 * 18 17 16 21 21 N 1.30751 * 120.00366 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00115 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47502 * 119.99832 * 22 20 18 25 25 H 1.48503 * 109.47115 * 240.00055 * 22 20 18 26 26 N 1.32272 * 119.61540 * 227.38845 * 13 12 11 27 27 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46850 * 300.00059 * 1 2 3 29 29 H 1.09002 * 109.47535 * 59.99568 * 1 2 3 30 30 H 1.08004 * 119.97811 * 0.04323 * 4 3 2 31 31 H 1.09001 * 109.46781 * 0.02562 * 8 7 5 32 32 H 1.08997 * 109.47424 * 300.00337 * 9 8 7 33 33 H 1.08996 * 109.47313 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.46465 * 60.00310 * 9 8 7 35 35 H 1.08993 * 109.47544 * 300.00031 * 10 8 7 36 36 H 1.09004 * 109.47096 * 60.00334 * 10 8 7 37 37 H 1.09005 * 109.47098 * 179.97438 * 10 8 7 38 38 H 1.07997 * 120.02710 * 179.72749 * 11 7 5 39 39 H 1.08005 * 120.26530 * 0.02562 * 14 13 12 40 40 H 1.08004 * 120.65470 * 180.24836 * 15 14 13 41 41 H 1.08004 * 120.39544 * 179.72613 * 16 15 14 42 42 H 0.96993 * 120.00276 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2932 2.3734 0.0005 5 6 1.9230 3.6057 0.0000 6 9 1.1858 4.7379 0.0010 7 6 3.3077 3.6831 -0.0016 8 6 3.9845 5.0296 -0.0028 9 6 4.8593 5.1618 1.2455 10 6 4.8565 5.1611 -1.2530 11 6 4.0674 2.5324 -0.0084 12 6 3.4426 1.2859 -0.0021 13 6 4.2548 0.0470 -0.0033 14 6 5.3314 -0.0754 0.8834 15 6 6.0864 -1.2382 0.8829 16 6 5.7562 -2.2442 -0.0073 17 6 4.6664 -2.0602 -0.8774 18 6 4.3189 -3.0803 -1.7923 19 1 4.8892 -3.9969 -1.8212 20 6 3.2354 -2.9022 -2.6609 21 7 2.5446 -1.7927 -2.6257 22 14 2.7758 -4.2505 -3.8694 23 1 3.7066 -5.3965 -3.7100 24 1 1.3857 -4.7005 -3.6039 25 1 2.8701 -3.7260 -5.2555 26 7 3.9578 -0.9285 -0.8457 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2145 2.3185 0.0017 31 1 3.2294 5.8157 -0.0017 32 1 4.2381 5.0682 2.1362 33 1 5.3492 6.1355 1.2444 34 1 5.6144 4.3756 1.2448 35 1 5.6115 4.3750 -1.2537 36 1 4.2332 5.0670 -2.1423 37 1 5.3457 6.1352 -1.2541 38 1 5.1454 2.5966 -0.0141 39 1 5.5692 0.7279 1.5651 40 1 6.9185 -1.3547 1.5615 41 1 6.3286 -3.1597 -0.0342 42 1 1.7938 -1.6695 -3.2272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241785462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:18 Heat of formation + Delta-G solvation = -50.056704 kcal Electronic energy + Delta-G solvation = -26359.684506 eV Core-core repulsion = 22604.445338 eV Total energy + Delta-G solvation = -3755.239168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.95740 -41.22469 -39.69999 -38.83900 -35.91427 -35.34163 -33.17627 -32.22682 -30.61020 -30.01916 -28.16386 -27.94475 -27.30978 -24.61558 -24.14067 -23.09752 -22.17880 -20.73140 -19.46055 -19.22699 -18.00479 -17.48098 -16.85645 -16.83071 -16.40949 -16.28496 -16.24029 -15.86489 -15.46614 -15.24530 -14.85404 -14.82613 -14.31559 -14.14716 -14.01132 -13.75154 -13.53835 -13.21986 -12.96777 -12.89917 -12.80997 -12.74395 -12.58514 -12.37095 -12.13577 -12.09464 -11.77302 -11.68723 -11.54399 -11.53056 -11.18656 -10.22413 -9.85637 -9.44717 -9.39719 -8.76344 -8.17991 -6.43157 -0.03134 0.34602 0.98116 1.25492 1.41265 1.53033 1.54974 2.25301 2.45705 2.59116 2.93886 3.21052 3.62277 3.65381 3.78053 3.99851 4.11966 4.18220 4.31406 4.33685 4.37671 4.41826 4.45355 4.65626 4.67359 4.77155 4.83564 4.85632 4.88381 4.93418 5.02396 5.03165 5.07355 5.16097 5.17741 5.28632 5.40512 5.42544 5.51317 5.57893 5.72252 5.81072 5.92921 6.20688 6.32360 6.58484 6.81145 7.03219 8.24809 8.51550 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.004671 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.918030 B = 5993.388306 C = 6916.628162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.299 6.299 3 C 0.172 3.828 4 C -0.251 4.251 5 C 0.129 3.871 6 F -0.136 7.136 7 C -0.149 4.149 8 C -0.047 4.047 9 C -0.141 4.141 10 C -0.143 4.143 11 C -0.032 4.032 12 C -0.084 4.084 13 C 0.168 3.832 14 C -0.301 4.301 15 C -0.057 4.057 16 C -0.300 4.300 17 C 0.221 3.779 18 C -0.469 4.469 19 H 0.083 0.917 20 C 0.028 3.972 21 N -0.733 5.733 22 Si 0.978 3.022 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.269 1.269 26 N -0.477 5.477 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.157 0.843 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.106 0.894 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 11.464 4.035 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.210 6.210 3 C 0.124 3.876 4 C -0.270 4.270 5 C 0.109 3.891 6 F -0.114 7.114 7 C -0.150 4.150 8 C -0.066 4.066 9 C -0.198 4.198 10 C -0.200 4.200 11 C -0.051 4.051 12 C -0.085 4.085 13 C 0.023 3.977 14 C -0.324 4.324 15 C -0.081 4.081 16 C -0.323 4.323 17 C 0.095 3.905 18 C -0.500 4.500 19 H 0.102 0.898 20 C -0.195 4.195 21 N -0.354 5.354 22 Si 0.799 3.201 23 H -0.181 1.181 24 H -0.192 1.192 25 H -0.194 1.194 26 N -0.189 5.189 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.174 0.826 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.114 11.450 3.348 12.330 hybrid contribution 0.001 -0.806 0.017 0.806 sum -3.112 10.645 3.366 11.590 Atomic orbital electron populations 1.23223 0.77798 1.04444 1.01808 1.86433 1.22116 1.25679 1.86807 1.18899 0.91360 0.84561 0.92792 1.21107 1.01590 0.90415 1.13921 1.17249 0.88807 0.81239 1.01809 1.91443 1.77014 1.49073 1.93876 1.19809 0.90984 0.97156 1.07089 1.20015 0.97861 0.91488 0.97225 1.21849 0.99213 1.02834 0.95885 1.21862 0.99250 1.02773 0.96109 1.20713 1.00320 0.88489 0.95583 1.18343 0.90149 0.93080 1.06956 1.20029 0.92199 0.92834 0.92671 1.21526 1.02476 1.00965 1.07453 1.21152 0.97792 0.92798 0.96380 1.21958 1.04237 1.01480 1.04619 1.19033 0.88762 0.91111 0.91564 1.19891 1.12742 1.01538 1.15808 0.89847 1.26839 0.95261 0.98437 0.98988 1.70309 1.12118 1.24057 1.28904 0.85223 0.78850 0.78468 0.77539 1.18102 1.19188 1.19425 1.68903 1.28268 1.00237 1.21517 0.88309 0.91105 0.92120 0.82590 0.89872 0.92860 0.90367 0.92434 0.92753 0.93552 0.90168 0.83712 0.86010 0.84903 0.87611 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.79 16 2 O -0.30 -12.93 9.38 -91.24 -0.86 -13.78 16 3 C 0.17 6.97 6.66 22.75 0.15 7.12 16 4 C -0.25 -8.31 9.01 22.38 0.20 -8.10 16 5 C 0.13 4.00 7.24 22.42 0.16 4.16 16 6 F -0.14 -3.86 16.17 44.97 0.73 -3.14 16 7 C -0.15 -4.46 4.79 -19.84 -0.10 -4.55 16 8 C -0.05 -1.09 3.07 -11.54 -0.04 -1.12 16 9 C -0.14 -2.73 9.01 71.98 0.65 -2.08 16 10 C -0.14 -3.05 9.00 71.98 0.65 -2.40 16 11 C -0.03 -1.11 8.07 22.47 0.18 -0.93 16 12 C -0.08 -3.56 5.63 -19.95 -0.11 -3.67 16 13 C 0.17 8.31 6.08 42.14 0.26 8.57 16 14 C -0.30 -13.46 9.48 22.79 0.22 -13.24 16 15 C -0.06 -2.54 10.15 22.39 0.23 -2.31 16 16 C -0.30 -15.12 9.83 22.89 0.22 -14.89 16 17 C 0.22 12.51 6.55 40.24 0.26 12.78 16 18 C -0.47 -25.93 9.14 23.47 0.21 -25.71 16 19 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 20 C 0.03 1.42 5.50 85.28 0.47 1.89 16 21 N -0.73 -39.47 11.46 21.83 0.25 -39.22 16 22 Si 0.98 38.75 29.56 68.60 2.03 40.78 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 25 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 26 N -0.48 -26.81 7.04 -178.26 -1.25 -28.06 16 27 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.07 1.75 7.66 -2.39 -0.02 1.74 16 29 H 0.06 1.70 7.66 -2.39 -0.02 1.68 16 30 H 0.16 4.32 6.30 -2.91 -0.02 4.30 16 31 H 0.08 1.83 7.11 -2.39 -0.02 1.81 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.15 7.39 -2.38 -0.02 1.13 16 35 H 0.05 1.22 7.36 -2.39 -0.02 1.21 16 36 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.15 4.57 6.99 -2.91 -0.02 4.55 16 39 H 0.12 4.63 7.97 -2.91 -0.02 4.61 16 40 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.27 13.41 8.29 -92.71 -0.77 12.64 16 Total: -1.00 -65.99 355.33 6.66 -59.33 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 1.03 Total: 26.82 kcal Atomic # 6 Polarization: -47.45 SS G_CDS: 4.73 Total: -42.72 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.00 Total: -67.29 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.86 Total: -13.78 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.73 Total: -3.14 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -65.99 6.66 -59.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241785462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.272 kcal (2) G-P(sol) polarization free energy of solvation -65.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds