Wall clock time and date at job start Tue Mar 31 2020 10:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35802 * 117.00426 * 2 1 4 4 C 1.38548 * 120.10753 * 359.97438 * 3 2 1 5 5 C 1.38399 * 120.03751 * 179.76701 * 4 3 2 6 6 F 1.35091 * 119.86764 * 180.25600 * 5 4 3 7 7 C 1.38662 * 120.26064 * 0.51240 * 5 4 3 8 8 C 1.50695 * 119.88752 * 179.76267 * 7 5 4 9 9 C 1.53001 * 109.47059 * 119.72950 * 8 7 5 10 10 C 1.52999 * 109.47123 * 239.72591 * 8 7 5 11 11 C 1.37916 * 120.21966 * 359.49153 * 7 5 4 12 12 C 1.39372 * 119.95481 * 0.25033 * 11 7 5 13 13 C 1.48237 * 120.12718 * 179.97438 * 12 11 7 14 14 C 1.38989 * 119.61967 * 46.57082 * 13 12 11 15 15 C 1.40812 * 118.75376 * 179.97438 * 14 13 12 16 16 C 1.41531 * 120.98081 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00081 * 332.74744 * 16 15 14 18 18 C 1.40045 * 119.99817 * 152.73706 * 16 15 14 19 19 N 1.30734 * 119.99900 * 160.82343 * 18 16 15 20 20 Si 1.86799 * 119.99850 * 340.83070 * 18 16 15 21 21 H 1.48502 * 109.47314 * 90.62406 * 20 18 16 22 22 H 1.48500 * 109.47162 * 210.62035 * 20 18 16 23 23 H 1.48501 * 109.47253 * 330.62289 * 20 18 16 24 24 C 1.41163 * 118.03307 * 0.02562 * 15 14 13 25 25 C 1.37702 * 119.09432 * 359.97438 * 24 15 14 26 26 N 1.31949 * 121.16262 * 359.73203 * 25 24 15 27 27 H 1.09010 * 109.46839 * 300.00413 * 1 2 3 28 28 H 1.09004 * 109.47168 * 59.99577 * 1 2 3 29 29 H 1.09002 * 109.47573 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.98356 * 0.04945 * 4 3 2 31 31 H 1.08996 * 109.47391 * 359.72737 * 8 7 5 32 32 H 1.08996 * 109.47193 * 59.99666 * 9 8 7 33 33 H 1.09001 * 109.47034 * 299.99487 * 9 8 7 34 34 H 1.08998 * 109.47449 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47742 * 299.99925 * 10 8 7 36 36 H 1.08997 * 109.47639 * 60.00147 * 10 8 7 37 37 H 1.09001 * 109.47476 * 180.02562 * 10 8 7 38 38 H 1.08001 * 120.02000 * 180.27445 * 11 7 5 39 39 H 1.07996 * 120.62682 * 359.97438 * 14 13 12 40 40 H 0.96998 * 119.99632 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.45396 * 179.97438 * 24 15 14 42 42 H 1.07995 * 119.42191 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2933 2.3734 -0.0005 5 6 1.9232 3.6057 0.0043 6 9 1.1863 4.7379 0.0090 7 6 3.3077 3.6828 -0.0009 8 6 3.9848 5.0291 -0.0010 9 6 4.8579 5.1609 1.2485 10 6 4.8587 5.1604 -1.2499 11 6 4.0670 2.5316 -0.0005 12 6 3.4422 1.2858 0.0000 13 6 4.2546 0.0459 -0.0001 14 6 5.3262 -0.0733 0.8769 15 6 6.0853 -1.2592 0.8617 16 6 7.1866 -1.4305 1.7341 17 1 7.7324 -0.5693 2.0903 18 6 7.5685 -2.7167 2.1355 19 7 8.7674 -2.9230 2.6142 20 14 6.3648 -4.1374 1.9867 21 1 6.5270 -4.7868 0.6611 22 1 6.6336 -5.1283 3.0595 23 1 4.9769 -3.6265 2.1211 24 6 5.7161 -2.2716 -0.0500 25 6 4.6382 -2.0635 -0.8812 26 7 3.9466 -0.9408 -0.8344 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2147 2.3187 -0.0001 31 1 3.2300 5.8154 -0.0014 32 1 5.6127 4.3745 1.2489 33 1 4.2353 5.0674 2.1383 34 1 5.3480 6.1344 1.2483 35 1 5.6136 4.3741 -1.2496 36 1 4.2368 5.0665 -2.1401 37 1 5.3488 6.1340 -1.2498 38 1 5.1451 2.5954 -0.0002 39 1 5.5722 0.7285 1.5573 40 1 9.0319 -3.8140 2.8919 41 1 6.2714 -3.1968 -0.0950 42 1 4.3508 -2.8347 -1.5805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241785483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:23 Heat of formation + Delta-G solvation = -47.198067 kcal Electronic energy + Delta-G solvation = -25890.407909 eV Core-core repulsion = 22135.292701 eV Total energy + Delta-G solvation = -3755.115208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.85996 -40.11727 -38.37760 -37.79511 -34.84042 -34.02910 -31.87141 -31.27590 -29.30833 -28.54143 -27.11570 -27.06152 -25.90121 -23.47167 -23.00598 -21.40186 -21.04744 -19.70718 -18.37597 -17.55331 -16.95256 -15.99079 -15.81881 -15.80479 -15.33064 -15.24118 -14.68045 -14.45137 -14.27304 -14.16637 -13.86382 -13.59349 -13.30162 -12.98850 -12.90012 -12.61243 -12.42436 -12.25982 -12.04296 -11.91439 -11.53535 -11.41868 -11.26157 -10.94922 -10.87509 -10.78365 -10.64950 -10.60019 -10.50981 -9.82474 -9.39714 -8.85666 -8.28564 -8.19001 -8.07189 -7.40842 -7.09605 -4.72755 1.15482 1.44036 2.44455 2.61983 3.05128 3.15161 3.25654 3.43575 3.73669 3.88357 4.32120 4.49653 4.63136 4.72721 4.90190 5.05522 5.14531 5.19816 5.20915 5.25939 5.41603 5.44163 5.53093 5.64773 5.68983 5.78259 5.84552 5.86681 5.96965 6.11405 6.13717 6.19967 6.25474 6.35291 6.42440 6.51796 6.56379 6.65931 6.84434 6.91954 7.12125 7.18538 7.55961 7.62839 7.90548 8.19231 8.43064 8.63548 9.36124 9.91513 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.004245 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.769943 B = 6593.769411 C = 7897.540311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.280 6.280 3 C 0.177 3.823 4 C -0.251 4.251 5 C 0.130 3.870 6 F -0.141 7.141 7 C -0.150 4.150 8 C -0.050 4.050 9 C -0.145 4.145 10 C -0.144 4.144 11 C -0.035 4.035 12 C -0.051 4.051 13 C 0.171 3.829 14 C -0.238 4.238 15 C 0.109 3.891 16 C -0.439 4.439 17 H 0.094 0.906 18 C 0.088 3.912 19 N -0.796 5.796 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.290 1.290 23 H -0.248 1.248 24 C -0.292 4.292 25 C 0.119 3.881 26 N -0.548 5.548 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.288 0.712 41 H 0.110 0.890 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 9.796 -3.428 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.191 6.191 3 C 0.130 3.870 4 C -0.271 4.271 5 C 0.110 3.890 6 F -0.120 7.120 7 C -0.151 4.151 8 C -0.068 4.068 9 C -0.202 4.202 10 C -0.201 4.201 11 C -0.054 4.054 12 C -0.053 4.053 13 C 0.038 3.962 14 C -0.261 4.261 15 C 0.101 3.899 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.134 4.134 19 N -0.420 5.420 20 Si 0.743 3.257 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.171 1.171 24 C -0.314 4.314 25 C -0.035 4.035 26 N -0.262 5.262 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.159 0.841 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.384 9.613 -3.865 15.393 hybrid contribution -0.065 -0.619 0.617 0.877 sum -11.449 8.994 -3.248 14.917 Atomic orbital electron populations 1.23080 0.79411 1.03869 1.00822 1.86360 1.20144 1.25383 1.87234 1.18702 0.91225 0.83798 0.93271 1.20963 1.00670 0.91033 1.14422 1.17161 0.88439 0.81258 1.02132 1.91435 1.77096 1.49504 1.93931 1.19595 0.91131 0.96440 1.07953 1.19946 0.97541 0.93119 0.96216 1.21876 0.99631 1.01907 0.96809 1.21866 0.99590 1.01849 0.96843 1.20748 1.00194 0.88984 0.95505 1.18140 0.89323 0.93123 1.04672 1.18904 0.92570 0.91183 0.93499 1.21816 0.98889 1.01092 1.04296 1.17827 0.90583 0.90831 0.90609 1.19494 1.09358 0.94398 1.23642 0.88819 1.26189 0.94976 1.00422 0.91779 1.69650 1.17469 1.25066 1.29790 0.86288 0.82625 0.79256 0.77558 1.19176 1.21736 1.17125 1.22041 1.04040 1.02350 1.02994 1.21893 0.91639 0.93787 0.96210 1.67506 1.31675 1.01626 1.25373 0.93024 0.92846 0.88315 0.84512 0.90400 0.91932 0.92557 0.92434 0.92039 0.92638 0.92433 0.84133 0.87303 0.90122 0.87261 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.28 -4.89 9.35 -19.12 -0.18 -5.06 16 3 C 0.18 3.07 6.66 -38.86 -0.26 2.81 16 4 C -0.25 -3.67 9.01 -39.41 -0.35 -4.02 16 5 C 0.13 1.88 7.24 -39.37 -0.29 1.59 16 6 F -0.14 -1.95 16.17 2.25 0.04 -1.91 16 7 C -0.15 -2.14 4.79 -104.59 -0.50 -2.64 16 8 C -0.05 -0.59 3.07 -91.77 -0.28 -0.87 16 9 C -0.14 -1.58 9.00 37.16 0.33 -1.25 16 10 C -0.14 -1.56 9.00 37.16 0.33 -1.22 16 11 C -0.04 -0.57 8.05 -39.28 -0.32 -0.89 16 12 C -0.05 -0.96 5.63 -104.76 -0.59 -1.55 16 13 C 0.17 3.78 6.09 -83.05 -0.51 3.27 16 14 C -0.24 -5.52 9.23 -38.33 -0.35 -5.87 16 15 C 0.11 2.74 5.17 -106.56 -0.55 2.19 16 16 C -0.44 -11.50 9.63 -37.65 -0.36 -11.87 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.09 2.22 5.42 -17.34 -0.09 2.13 16 19 N -0.80 -20.41 13.92 55.55 0.77 -19.63 16 20 Si 0.92 20.35 24.57 -169.99 -4.18 16.18 16 21 H -0.27 -5.68 6.43 56.52 0.36 -5.31 16 22 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.25 -5.76 7.04 56.52 0.40 -5.37 16 24 C -0.29 -6.97 7.42 -38.67 -0.29 -7.25 16 25 C 0.12 2.68 11.15 -17.70 -0.20 2.48 16 26 N -0.55 -12.57 9.48 -9.96 -0.09 -12.67 16 27 H 0.05 0.52 7.66 -51.92 -0.40 0.12 16 28 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.14 1.65 6.30 -52.49 -0.33 1.32 16 31 H 0.08 0.89 7.11 -51.93 -0.37 0.52 16 32 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.69 7.38 -51.93 -0.38 0.31 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.14 2.14 6.97 -52.49 -0.37 1.78 16 39 H 0.11 2.35 7.96 -52.49 -0.42 1.93 16 40 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 41 H 0.11 2.56 4.43 -52.49 -0.23 2.32 16 42 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -28.53 348.42 -7.08 -35.61 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.41 Total: 3.93 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -3.28 Total: -21.68 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.68 Total: -32.30 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.18 Total: -5.06 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.18 Total: 16.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.53 -7.08 -35.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241785483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.592 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds