Wall clock time and date at job start Tue Mar 31 2020 10:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35802 * 117.00426 * 2 1 4 4 C 1.38548 * 120.10753 * 359.97438 * 3 2 1 5 5 C 1.38399 * 120.03751 * 179.76701 * 4 3 2 6 6 F 1.35091 * 119.86764 * 180.25600 * 5 4 3 7 7 C 1.38662 * 120.26064 * 0.51240 * 5 4 3 8 8 C 1.50695 * 119.88752 * 179.76267 * 7 5 4 9 9 C 1.53001 * 109.47059 * 119.72950 * 8 7 5 10 10 C 1.52999 * 109.47123 * 239.72591 * 8 7 5 11 11 C 1.37916 * 120.21966 * 359.49153 * 7 5 4 12 12 C 1.39372 * 119.95481 * 0.25033 * 11 7 5 13 13 C 1.48237 * 120.12718 * 179.97438 * 12 11 7 14 14 C 1.38989 * 119.61967 * 46.57082 * 13 12 11 15 15 C 1.40812 * 118.75376 * 179.97438 * 14 13 12 16 16 C 1.41531 * 120.98081 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00081 * 332.74744 * 16 15 14 18 18 C 1.40045 * 119.99817 * 152.73706 * 16 15 14 19 19 N 1.30734 * 119.99900 * 160.82343 * 18 16 15 20 20 Si 1.86799 * 119.99850 * 340.83070 * 18 16 15 21 21 H 1.48502 * 109.47314 * 90.62406 * 20 18 16 22 22 H 1.48500 * 109.47162 * 210.62035 * 20 18 16 23 23 H 1.48501 * 109.47253 * 330.62289 * 20 18 16 24 24 C 1.41163 * 118.03307 * 0.02562 * 15 14 13 25 25 C 1.37702 * 119.09432 * 359.97438 * 24 15 14 26 26 N 1.31949 * 121.16262 * 359.73203 * 25 24 15 27 27 H 1.09010 * 109.46839 * 300.00413 * 1 2 3 28 28 H 1.09004 * 109.47168 * 59.99577 * 1 2 3 29 29 H 1.09002 * 109.47573 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.98356 * 0.04945 * 4 3 2 31 31 H 1.08996 * 109.47391 * 359.72737 * 8 7 5 32 32 H 1.08996 * 109.47193 * 59.99666 * 9 8 7 33 33 H 1.09001 * 109.47034 * 299.99487 * 9 8 7 34 34 H 1.08998 * 109.47449 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47742 * 299.99925 * 10 8 7 36 36 H 1.08997 * 109.47639 * 60.00147 * 10 8 7 37 37 H 1.09001 * 109.47476 * 180.02562 * 10 8 7 38 38 H 1.08001 * 120.02000 * 180.27445 * 11 7 5 39 39 H 1.07996 * 120.62682 * 359.97438 * 14 13 12 40 40 H 0.96998 * 119.99632 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.45396 * 179.97438 * 24 15 14 42 42 H 1.07995 * 119.42191 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2933 2.3734 -0.0005 5 6 1.9232 3.6057 0.0043 6 9 1.1863 4.7379 0.0090 7 6 3.3077 3.6828 -0.0009 8 6 3.9848 5.0291 -0.0010 9 6 4.8579 5.1609 1.2485 10 6 4.8587 5.1604 -1.2499 11 6 4.0670 2.5316 -0.0005 12 6 3.4422 1.2858 0.0000 13 6 4.2546 0.0459 -0.0001 14 6 5.3262 -0.0733 0.8769 15 6 6.0853 -1.2592 0.8617 16 6 7.1866 -1.4305 1.7341 17 1 7.7324 -0.5693 2.0903 18 6 7.5685 -2.7167 2.1355 19 7 8.7674 -2.9230 2.6142 20 14 6.3648 -4.1374 1.9867 21 1 6.5270 -4.7868 0.6611 22 1 6.6336 -5.1283 3.0595 23 1 4.9769 -3.6265 2.1211 24 6 5.7161 -2.2716 -0.0500 25 6 4.6382 -2.0635 -0.8812 26 7 3.9466 -0.9408 -0.8344 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2147 2.3187 -0.0001 31 1 3.2300 5.8154 -0.0014 32 1 5.6127 4.3745 1.2489 33 1 4.2353 5.0674 2.1383 34 1 5.3480 6.1344 1.2483 35 1 5.6136 4.3741 -1.2496 36 1 4.2368 5.0665 -2.1401 37 1 5.3488 6.1340 -1.2498 38 1 5.1451 2.5954 -0.0002 39 1 5.5722 0.7285 1.5573 40 1 9.0319 -3.8140 2.8919 41 1 6.2714 -3.1968 -0.0950 42 1 4.3508 -2.8347 -1.5805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241785483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:22 Heat of formation + Delta-G solvation = -61.844870 kcal Electronic energy + Delta-G solvation = -25891.043042 eV Core-core repulsion = 22135.292701 eV Total energy + Delta-G solvation = -3755.750341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.00220 -41.40354 -40.06905 -38.94502 -36.13169 -35.69590 -33.45048 -33.04355 -30.51368 -29.95248 -28.15963 -27.97756 -27.74860 -24.92564 -24.18504 -23.11927 -22.53415 -20.92113 -19.66218 -19.22039 -18.14367 -17.74955 -17.02504 -16.95733 -16.78960 -16.43562 -16.26990 -16.12570 -15.56052 -15.36003 -15.03817 -14.88006 -14.72628 -14.49933 -14.19868 -14.01389 -13.72040 -13.53809 -13.20405 -13.12059 -12.94275 -12.78948 -12.72890 -12.46437 -12.24550 -12.16858 -11.78439 -11.70128 -11.62338 -11.61742 -11.22517 -10.23363 -10.17261 -9.88752 -9.57136 -9.01097 -8.86828 -6.70929 -0.17850 0.24079 0.70584 0.81069 1.24950 1.39236 1.46552 2.07451 2.33484 2.43096 2.66847 3.13944 3.42181 3.46392 3.60465 3.73976 3.98654 4.08092 4.23522 4.30021 4.32480 4.38522 4.38603 4.53340 4.61533 4.68038 4.70434 4.75619 4.78143 4.82324 4.82472 4.98420 5.00589 5.08114 5.09229 5.14856 5.28704 5.31668 5.38900 5.41893 5.50488 5.69968 5.70964 6.04409 6.23024 6.42791 6.53134 6.67933 7.56481 8.06235 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.004245 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.769943 B = 6593.769411 C = 7897.540311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.313 6.313 3 C 0.171 3.829 4 C -0.242 4.242 5 C 0.135 3.865 6 F -0.133 7.133 7 C -0.147 4.147 8 C -0.049 4.049 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.033 4.033 12 C -0.090 4.090 13 C 0.178 3.822 14 C -0.255 4.255 15 C 0.096 3.904 16 C -0.472 4.472 17 H 0.065 0.935 18 C 0.057 3.943 19 N -0.829 5.829 20 Si 0.966 3.034 21 H -0.248 1.248 22 H -0.272 1.272 23 H -0.266 1.266 24 C -0.305 4.305 25 C 0.118 3.882 26 N -0.552 5.552 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.166 0.834 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.113 0.887 40 H 0.299 0.701 41 H 0.114 0.886 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.252 10.532 -4.316 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.225 6.225 3 C 0.124 3.876 4 C -0.261 4.261 5 C 0.115 3.885 6 F -0.111 7.111 7 C -0.148 4.148 8 C -0.067 4.067 9 C -0.202 4.202 10 C -0.200 4.200 11 C -0.051 4.051 12 C -0.092 4.092 13 C 0.046 3.954 14 C -0.277 4.277 15 C 0.089 3.911 16 C -0.503 4.503 17 H 0.084 0.916 18 C -0.161 4.161 19 N -0.454 5.454 20 Si 0.790 3.210 21 H -0.173 1.173 22 H -0.199 1.199 23 H -0.190 1.190 24 C -0.327 4.327 25 C -0.037 4.037 26 N -0.266 5.266 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.183 0.817 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.158 0.842 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.687 10.354 -4.752 17.807 hybrid contribution 0.506 -0.668 0.830 1.180 sum -13.181 9.686 -3.922 16.820 Atomic orbital electron populations 1.23406 0.76699 1.05461 1.02442 1.86299 1.23112 1.25818 1.87303 1.18735 0.90777 0.84724 0.93408 1.21146 1.01944 0.90004 1.13037 1.17254 0.88558 0.81552 1.01093 1.91462 1.76867 1.49052 1.93729 1.19820 0.91279 0.96978 1.06693 1.20028 0.97904 0.91758 0.97002 1.21876 0.99295 1.02727 0.96260 1.21863 0.99251 1.02712 0.96206 1.20740 1.00344 0.88829 0.95220 1.18183 0.90244 0.92468 1.08264 1.19338 0.91989 0.92097 0.92003 1.21967 0.99677 1.00927 1.05169 1.18017 0.90475 0.92031 0.90626 1.19484 1.10732 0.94325 1.25731 0.91642 1.26790 0.96131 1.01952 0.91251 1.69655 1.18500 1.26321 1.30892 0.85525 0.79500 0.77113 0.78870 1.17346 1.19865 1.19031 1.22161 1.04852 1.02337 1.03351 1.22434 0.90781 0.94373 0.96071 1.67649 1.31678 1.01929 1.25346 0.91344 0.91130 0.86940 0.81690 0.89436 0.92962 0.92873 0.90406 0.92977 0.92795 0.90401 0.84245 0.86939 0.89013 0.86825 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.41 16 2 O -0.31 -10.48 9.35 -91.33 -0.85 -11.33 16 3 C 0.17 5.69 6.66 22.74 0.15 5.84 16 4 C -0.24 -6.45 9.01 22.38 0.20 -6.25 16 5 C 0.14 3.58 7.24 22.41 0.16 3.74 16 6 F -0.13 -3.24 16.17 44.97 0.73 -2.51 16 7 C -0.15 -3.94 4.79 -19.84 -0.10 -4.04 16 8 C -0.05 -1.04 3.07 -11.54 -0.04 -1.08 16 9 C -0.14 -2.93 9.00 71.98 0.65 -2.28 16 10 C -0.14 -2.82 9.00 71.98 0.65 -2.17 16 11 C -0.03 -1.03 8.05 22.47 0.18 -0.85 16 12 C -0.09 -3.36 5.63 -19.95 -0.11 -3.48 16 13 C 0.18 7.96 6.09 41.83 0.25 8.21 16 14 C -0.26 -12.21 9.23 23.08 0.21 -11.99 16 15 C 0.10 4.97 5.17 -21.12 -0.11 4.86 16 16 C -0.47 -25.96 9.63 23.52 0.23 -25.73 16 17 H 0.07 3.82 8.06 -2.91 -0.02 3.80 16 18 C 0.06 2.96 5.42 85.29 0.46 3.42 16 19 N -0.83 -43.52 13.92 21.84 0.30 -43.22 16 20 Si 0.97 41.86 24.57 68.60 1.69 43.54 16 21 H -0.25 -9.99 6.43 99.48 0.64 -9.35 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.27 -12.22 7.04 99.48 0.70 -11.52 16 24 C -0.30 -14.55 7.42 22.86 0.17 -14.38 16 25 C 0.12 5.18 11.15 84.55 0.94 6.13 16 26 N -0.55 -25.04 9.48 -185.41 -1.76 -26.79 16 27 H 0.07 1.18 7.66 -2.38 -0.02 1.16 16 28 H 0.07 1.21 7.66 -2.38 -0.02 1.19 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.17 3.36 6.30 -2.91 -0.02 3.34 16 31 H 0.09 1.74 7.11 -2.39 -0.02 1.73 16 32 H 0.05 1.16 7.38 -2.39 -0.02 1.14 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.12 7.38 -2.39 -0.02 1.10 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.14 4.35 6.97 -2.91 -0.02 4.33 16 39 H 0.11 5.12 7.96 -2.91 -0.02 5.10 16 40 H 0.30 13.98 8.29 -92.71 -0.77 13.21 16 41 H 0.11 5.24 4.43 -2.91 -0.01 5.23 16 42 H 0.16 5.77 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -62.52 348.42 6.10 -56.42 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.97 Total: 22.55 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 5.02 Total: -38.64 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.45 Total: -70.01 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.85 Total: -11.33 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.73 Total: -2.51 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.69 Total: 43.54 kcal Total: -62.52 6.10 -56.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241785483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.429 kcal (2) G-P(sol) polarization free energy of solvation -62.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds