Wall clock time and date at job start Tue Mar 31 2020 10:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35773 * 117.00117 * 2 1 4 4 C 1.38485 * 120.12432 * 0.23026 * 3 2 1 5 5 C 1.38433 * 120.06069 * 180.27630 * 4 3 2 6 6 F 1.35100 * 119.84121 * 179.74295 * 5 4 3 7 7 C 1.38810 * 120.32283 * 359.76834 * 5 4 3 8 8 C 1.50690 * 119.87548 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47205 * 120.01936 * 8 7 5 10 10 C 1.52996 * 109.47412 * 240.02014 * 8 7 5 11 11 C 1.37786 * 120.24827 * 359.97438 * 7 5 4 12 12 C 1.39680 * 119.93453 * 359.97438 * 11 7 5 13 13 C 1.47768 * 120.16025 * 180.02562 * 12 11 7 14 14 C 1.40366 * 120.35733 * 129.97841 * 13 12 11 15 15 C 1.36605 * 118.60551 * 179.76388 * 14 13 12 16 16 C 1.40923 * 119.26324 * 0.50223 * 15 14 13 17 17 C 1.40911 * 119.67288 * 179.76458 * 16 15 14 18 18 H 1.07999 * 120.00007 * 359.72261 * 17 16 15 19 19 C 1.40065 * 120.00011 * 179.72498 * 17 16 15 20 20 N 1.30743 * 120.00206 * 359.72511 * 19 17 16 21 21 Si 1.86795 * 119.99993 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47274 * 90.00242 * 21 19 17 23 23 H 1.48504 * 109.47383 * 209.99915 * 21 19 17 24 24 H 1.48502 * 109.47297 * 329.99877 * 21 19 17 25 25 N 1.33813 * 120.65536 * 359.48839 * 16 15 14 26 26 C 1.31167 * 121.50626 * 0.25241 * 25 16 15 27 27 H 1.09001 * 109.47137 * 60.00388 * 1 2 3 28 28 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47407 * 300.00350 * 1 2 3 30 30 H 1.08003 * 119.96946 * 0.02608 * 4 3 2 31 31 H 1.09004 * 109.47568 * 0.02562 * 8 7 5 32 32 H 1.09000 * 109.47534 * 179.97438 * 9 8 7 33 33 H 1.08994 * 109.47518 * 300.00135 * 9 8 7 34 34 H 1.09010 * 109.46523 * 60.00067 * 9 8 7 35 35 H 1.09004 * 109.46786 * 60.00178 * 10 8 7 36 36 H 1.09000 * 109.47838 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.47129 * 300.00434 * 10 8 7 38 38 H 1.07990 * 120.02979 * 180.02562 * 11 7 5 39 39 H 1.08004 * 120.69659 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.37083 * 180.24654 * 15 14 13 41 41 H 0.97000 * 120.00452 * 180.02562 * 20 19 17 42 42 H 1.07999 * 119.65946 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2937 2.3728 0.0048 5 6 1.9235 3.6055 -0.0010 6 9 1.1858 4.7374 -0.0015 7 6 3.3094 3.6845 -0.0068 8 6 3.9845 5.0316 -0.0136 9 6 4.8632 5.1681 1.2315 10 6 4.8524 5.1609 -1.2669 11 6 4.0700 2.5356 -0.0063 12 6 3.4455 1.2862 0.0006 13 6 4.2564 0.0509 0.0017 14 6 3.9988 -0.9659 0.9345 15 6 4.7672 -2.0949 0.9003 16 6 5.7957 -2.1993 -0.0575 17 6 6.5968 -3.3579 -0.0973 18 1 6.4240 -4.1583 0.6069 19 6 7.6172 -3.4714 -1.0500 20 7 7.8229 -2.5047 -1.9059 21 14 8.6796 -5.0069 -1.1023 22 1 8.0608 -6.0063 -2.0099 23 1 10.0331 -4.6557 -1.6021 24 1 8.7895 -5.5796 0.2634 25 7 6.0156 -1.2116 -0.9330 26 6 5.2916 -0.1179 -0.9286 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2151 2.3181 0.0090 31 1 3.2285 5.8170 -0.0125 32 1 5.3519 6.1424 1.2263 33 1 4.2450 5.0761 2.1244 34 1 5.6192 4.3828 1.2304 35 1 4.2263 5.0637 -2.1540 36 1 5.3404 6.1355 -1.2722 37 1 5.6083 4.3756 -1.2680 38 1 5.1479 2.6011 -0.0104 39 1 3.2070 -0.8598 1.6612 40 1 4.5912 -2.8967 1.6020 41 1 8.5293 -2.5835 -2.5660 42 1 5.4952 0.6608 -1.6487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241787742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:27 Heat of formation + Delta-G solvation = -42.136477 kcal Electronic energy + Delta-G solvation = -25705.003160 eV Core-core repulsion = 21950.107438 eV Total energy + Delta-G solvation = -3754.895721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.69390 -39.94993 -38.05345 -37.66642 -34.77244 -33.72733 -31.63327 -30.55713 -29.24388 -28.68718 -27.11770 -27.07310 -25.45676 -23.09858 -22.49685 -21.68578 -20.71300 -19.54642 -18.19987 -17.56479 -16.78060 -15.76646 -15.71089 -15.63978 -15.47000 -15.14957 -14.38119 -14.33153 -14.07263 -14.03545 -13.74323 -13.27513 -13.22363 -12.70354 -12.59133 -12.27051 -12.15560 -12.11419 -11.91570 -11.75969 -11.34485 -11.23761 -11.21543 -11.07287 -10.90858 -10.67230 -10.64012 -10.48731 -10.36156 -9.97908 -9.46551 -8.68090 -8.25766 -7.99548 -7.61108 -7.20506 -6.48952 -4.57325 1.38301 1.57326 2.68220 3.03725 3.06330 3.09318 3.13848 3.52629 3.86805 3.92892 4.49214 4.65989 4.72824 4.87163 5.09462 5.13311 5.23047 5.25823 5.36154 5.50256 5.53440 5.60396 5.68369 5.82589 5.88507 5.90637 5.94788 6.01518 6.05151 6.21693 6.23225 6.29653 6.34406 6.45874 6.55875 6.68414 6.79799 6.84250 7.02692 7.07164 7.35030 7.55985 7.61576 7.81632 7.99775 8.14287 8.56127 8.85366 10.04428 10.20891 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.003622 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.738636 B = 7728.374312 C = 8965.509123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.293 6.293 3 C 0.139 3.861 4 C -0.240 4.240 5 C 0.103 3.897 6 F -0.146 7.146 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.064 4.064 12 C -0.009 4.009 13 C -0.268 4.268 14 C -0.019 4.019 15 C -0.275 4.275 16 C 0.255 3.745 17 C -0.417 4.417 18 H 0.085 0.915 19 C 0.066 3.934 20 N -0.705 5.705 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.260 1.260 25 N -0.488 5.488 26 C 0.154 3.846 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.275 0.725 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 9.794 2.240 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.206 6.206 3 C 0.093 3.907 4 C -0.259 4.259 5 C 0.084 3.916 6 F -0.125 7.125 7 C -0.140 4.140 8 C -0.070 4.070 9 C -0.200 4.200 10 C -0.201 4.201 11 C -0.082 4.082 12 C -0.010 4.010 13 C -0.274 4.274 14 C -0.042 4.042 15 C -0.298 4.298 16 C 0.132 3.868 17 C -0.447 4.447 18 H 0.104 0.896 19 C -0.161 4.161 20 N -0.325 5.325 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.184 1.184 25 N -0.200 5.200 26 C -0.014 4.014 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.153 0.847 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.132 9.520 1.462 11.985 hybrid contribution -0.879 -0.210 0.569 1.068 sum -8.011 9.310 2.031 12.449 Atomic orbital electron populations 1.23038 0.79518 1.03703 1.00808 1.86247 1.20142 1.26043 1.88142 1.18922 0.91715 0.83427 0.96671 1.20908 1.00301 0.91217 1.13523 1.17117 0.88408 0.81178 1.04923 1.91411 1.77126 1.49686 1.94266 1.19619 0.91124 0.96360 1.06884 1.19948 0.97476 0.93447 0.96081 1.21856 0.99559 1.01695 0.96926 1.21858 0.99646 1.01731 0.96846 1.20835 0.99824 0.89325 0.98210 1.18323 0.88724 0.93937 1.00041 1.18772 1.05561 0.96172 1.06866 1.20494 0.95805 0.92469 0.95475 1.21375 1.03319 0.99429 1.05635 1.18624 0.89384 0.91733 0.87080 1.19689 1.11081 1.01106 1.12854 0.89649 1.26145 0.97648 0.97545 0.94720 1.70136 1.23281 1.29225 1.09890 0.86299 0.79104 0.81494 0.79834 1.19283 1.19976 1.18424 1.68791 1.26454 1.00446 1.24264 1.22692 0.89569 0.95310 0.93857 0.93022 0.88403 0.93078 0.85050 0.90600 0.92595 0.92718 0.92033 0.92644 0.92594 0.91967 0.84676 0.88763 0.88374 0.91371 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.28 16 2 O -0.29 -5.03 8.92 -19.03 -0.17 -5.20 16 3 C 0.14 2.41 6.62 -38.75 -0.26 2.15 16 4 C -0.24 -3.65 9.01 -39.42 -0.35 -4.00 16 5 C 0.10 1.58 7.25 -39.30 -0.28 1.29 16 6 F -0.15 -2.16 16.17 2.25 0.04 -2.12 16 7 C -0.14 -2.07 4.79 -104.58 -0.50 -2.57 16 8 C -0.05 -0.63 3.07 -91.78 -0.28 -0.92 16 9 C -0.14 -1.62 9.00 37.16 0.33 -1.29 16 10 C -0.14 -1.63 9.00 37.16 0.33 -1.30 16 11 C -0.06 -1.05 8.17 -39.21 -0.32 -1.37 16 12 C -0.01 -0.16 5.50 -104.72 -0.58 -0.74 16 13 C -0.27 -5.91 5.30 -104.47 -0.55 -6.46 16 14 C -0.02 -0.43 8.85 -39.37 -0.35 -0.78 16 15 C -0.28 -6.69 9.76 -39.16 -0.38 -7.07 16 16 C 0.26 6.85 6.55 -84.98 -0.56 6.29 16 17 C -0.42 -10.88 9.11 -37.89 -0.35 -11.23 16 18 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 19 C 0.07 1.63 5.50 -17.33 -0.10 1.54 16 20 N -0.71 -18.27 11.44 55.55 0.64 -17.63 16 21 Si 0.91 17.99 29.56 -169.99 -5.02 12.97 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 N -0.49 -13.18 7.83 -10.82 -0.08 -13.26 16 26 C 0.15 3.67 10.70 -17.10 -0.18 3.48 16 27 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 30 H 0.13 1.68 6.29 -52.48 -0.33 1.35 16 31 H 0.08 0.93 7.11 -51.93 -0.37 0.56 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.72 7.37 -51.92 -0.38 0.34 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 38 H 0.14 2.14 7.06 -52.49 -0.37 1.77 16 39 H 0.09 1.95 7.77 -52.48 -0.41 1.54 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 41 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 42 H 0.12 2.54 8.04 -52.49 -0.42 2.12 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -28.78 354.49 -8.19 -36.97 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.54 Total: 4.61 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.38 Total: -21.67 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.55 Total: -30.89 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.17 Total: -5.20 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.78 -8.19 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241787742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.166 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds