Wall clock time and date at job start Tue Mar 31 2020 10:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35773 * 117.00117 * 2 1 4 4 C 1.38485 * 120.12432 * 0.23026 * 3 2 1 5 5 C 1.38433 * 120.06069 * 180.27630 * 4 3 2 6 6 F 1.35100 * 119.84121 * 179.74295 * 5 4 3 7 7 C 1.38810 * 120.32283 * 359.76834 * 5 4 3 8 8 C 1.50690 * 119.87548 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47205 * 120.01936 * 8 7 5 10 10 C 1.52996 * 109.47412 * 240.02014 * 8 7 5 11 11 C 1.37786 * 120.24827 * 359.97438 * 7 5 4 12 12 C 1.39680 * 119.93453 * 359.97438 * 11 7 5 13 13 C 1.47768 * 120.16025 * 180.02562 * 12 11 7 14 14 C 1.40366 * 120.35733 * 129.97841 * 13 12 11 15 15 C 1.36605 * 118.60551 * 179.76388 * 14 13 12 16 16 C 1.40923 * 119.26324 * 0.50223 * 15 14 13 17 17 C 1.40911 * 119.67288 * 179.76458 * 16 15 14 18 18 H 1.07999 * 120.00007 * 359.72261 * 17 16 15 19 19 C 1.40065 * 120.00011 * 179.72498 * 17 16 15 20 20 N 1.30743 * 120.00206 * 359.72511 * 19 17 16 21 21 Si 1.86795 * 119.99993 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47274 * 90.00242 * 21 19 17 23 23 H 1.48504 * 109.47383 * 209.99915 * 21 19 17 24 24 H 1.48502 * 109.47297 * 329.99877 * 21 19 17 25 25 N 1.33813 * 120.65536 * 359.48839 * 16 15 14 26 26 C 1.31167 * 121.50626 * 0.25241 * 25 16 15 27 27 H 1.09001 * 109.47137 * 60.00388 * 1 2 3 28 28 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47407 * 300.00350 * 1 2 3 30 30 H 1.08003 * 119.96946 * 0.02608 * 4 3 2 31 31 H 1.09004 * 109.47568 * 0.02562 * 8 7 5 32 32 H 1.09000 * 109.47534 * 179.97438 * 9 8 7 33 33 H 1.08994 * 109.47518 * 300.00135 * 9 8 7 34 34 H 1.09010 * 109.46523 * 60.00067 * 9 8 7 35 35 H 1.09004 * 109.46786 * 60.00178 * 10 8 7 36 36 H 1.09000 * 109.47838 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.47129 * 300.00434 * 10 8 7 38 38 H 1.07990 * 120.02979 * 180.02562 * 11 7 5 39 39 H 1.08004 * 120.69659 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.37083 * 180.24654 * 15 14 13 41 41 H 0.97000 * 120.00452 * 180.02562 * 20 19 17 42 42 H 1.07999 * 119.65946 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2937 2.3728 0.0048 5 6 1.9235 3.6055 -0.0010 6 9 1.1858 4.7374 -0.0015 7 6 3.3094 3.6845 -0.0068 8 6 3.9845 5.0316 -0.0136 9 6 4.8632 5.1681 1.2315 10 6 4.8524 5.1609 -1.2669 11 6 4.0700 2.5356 -0.0063 12 6 3.4455 1.2862 0.0006 13 6 4.2564 0.0509 0.0017 14 6 3.9988 -0.9659 0.9345 15 6 4.7672 -2.0949 0.9003 16 6 5.7957 -2.1993 -0.0575 17 6 6.5968 -3.3579 -0.0973 18 1 6.4240 -4.1583 0.6069 19 6 7.6172 -3.4714 -1.0500 20 7 7.8229 -2.5047 -1.9059 21 14 8.6796 -5.0069 -1.1023 22 1 8.0608 -6.0063 -2.0099 23 1 10.0331 -4.6557 -1.6021 24 1 8.7895 -5.5796 0.2634 25 7 6.0156 -1.2116 -0.9330 26 6 5.2916 -0.1179 -0.9286 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2151 2.3181 0.0090 31 1 3.2285 5.8170 -0.0125 32 1 5.3519 6.1424 1.2263 33 1 4.2450 5.0761 2.1244 34 1 5.6192 4.3828 1.2304 35 1 4.2263 5.0637 -2.1540 36 1 5.3404 6.1355 -1.2722 37 1 5.6083 4.3756 -1.2680 38 1 5.1479 2.6011 -0.0104 39 1 3.2070 -0.8598 1.6612 40 1 4.5912 -2.8967 1.6020 41 1 8.5293 -2.5835 -2.5660 42 1 5.4952 0.6608 -1.6487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241787742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:26 Heat of formation + Delta-G solvation = -55.521935 kcal Electronic energy + Delta-G solvation = -25705.583597 eV Core-core repulsion = 21950.107438 eV Total energy + Delta-G solvation = -3755.476158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.91490 -41.26615 -39.81089 -38.87898 -36.03236 -35.39160 -33.22691 -32.41111 -30.63708 -30.09206 -28.22545 -27.97200 -27.16124 -24.39514 -23.97093 -23.45307 -22.23836 -20.75716 -19.42547 -19.41480 -18.03509 -17.45325 -17.01211 -16.87964 -16.81205 -16.31128 -16.04118 -15.83674 -15.51321 -15.21859 -14.84774 -14.68290 -14.30659 -14.20820 -14.09742 -13.82370 -13.58630 -13.28304 -13.05636 -12.94462 -12.82347 -12.76432 -12.69540 -12.45384 -12.16026 -12.10453 -11.79528 -11.71866 -11.61555 -11.53438 -11.21013 -10.24813 -9.97706 -9.50569 -9.47374 -8.77426 -8.30850 -6.48660 0.01953 0.31748 0.93340 1.24950 1.41564 1.53783 1.56751 2.22352 2.38516 2.57314 2.86584 3.25316 3.65417 3.71565 3.85979 3.98140 4.11533 4.19426 4.27991 4.31251 4.35596 4.38132 4.44440 4.48650 4.67473 4.73477 4.82682 4.82918 4.88930 4.93732 4.99775 5.00816 5.09632 5.14364 5.17405 5.21694 5.38802 5.39282 5.51364 5.54793 5.69106 5.85254 5.91569 6.13817 6.26979 6.49115 6.70334 6.95091 8.17305 8.41432 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.003622 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.738636 B = 7728.374312 C = 8965.509123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.138 3.862 4 C -0.234 4.234 5 C 0.109 3.891 6 F -0.139 7.139 7 C -0.138 4.138 8 C -0.050 4.050 9 C -0.142 4.142 10 C -0.143 4.143 11 C -0.056 4.056 12 C -0.046 4.046 13 C -0.246 4.246 14 C -0.022 4.022 15 C -0.289 4.289 16 C 0.223 3.777 17 C -0.457 4.457 18 H 0.091 0.909 19 C 0.023 3.977 20 N -0.749 5.749 21 Si 0.989 3.011 22 H -0.263 1.263 23 H -0.267 1.267 24 H -0.254 1.254 25 N -0.520 5.520 26 C 0.131 3.869 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.135 0.865 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.281 0.719 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.275 11.131 2.637 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.092 3.908 4 C -0.253 4.253 5 C 0.090 3.910 6 F -0.117 7.117 7 C -0.139 4.139 8 C -0.069 4.069 9 C -0.199 4.199 10 C -0.200 4.200 11 C -0.074 4.074 12 C -0.048 4.048 13 C -0.252 4.252 14 C -0.046 4.046 15 C -0.312 4.312 16 C 0.099 3.901 17 C -0.488 4.488 18 H 0.109 0.891 19 C -0.199 4.199 20 N -0.370 5.370 21 Si 0.808 3.192 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.178 1.178 25 N -0.232 5.232 26 C -0.035 4.035 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.412 10.893 1.864 13.888 hybrid contribution -0.749 -0.372 0.483 0.965 sum -9.161 10.521 2.346 14.146 Atomic orbital electron populations 1.23370 0.76821 1.05389 1.02340 1.86203 1.23059 1.26242 1.88107 1.18911 0.91231 0.84345 0.96345 1.21093 1.01597 0.90263 1.12367 1.17263 0.88615 0.81480 1.03664 1.91437 1.76936 1.49310 1.94066 1.19847 0.91211 0.97038 1.05816 1.20029 0.97845 0.91968 0.97034 1.21850 0.99197 1.02634 0.96205 1.21856 0.99303 1.02678 0.96143 1.20814 1.00009 0.89140 0.97478 1.18285 0.89578 0.93266 1.03639 1.19010 1.04233 0.97057 1.04862 1.20735 0.95873 0.92090 0.95857 1.21548 1.03337 1.00604 1.05684 1.19042 0.90625 0.92368 0.88036 1.20020 1.12699 1.01612 1.14456 0.89080 1.27051 0.98424 1.00801 0.93667 1.70229 1.24389 1.31497 1.10877 0.85114 0.77103 0.76939 0.80000 1.18727 1.19123 1.17759 1.68721 1.27938 1.01407 1.25147 1.22994 0.90434 0.95123 0.94927 0.91639 0.86873 0.91222 0.82333 0.89855 0.90496 0.92951 0.92888 0.93002 0.90497 0.92804 0.84681 0.86837 0.87338 0.90828 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -10.62 8.92 -91.01 -0.81 -11.44 16 3 C 0.14 4.58 6.62 22.81 0.15 4.74 16 4 C -0.23 -6.47 9.01 22.38 0.20 -6.27 16 5 C 0.11 3.04 7.25 22.45 0.16 3.21 16 6 F -0.14 -3.64 16.17 44.97 0.73 -2.91 16 7 C -0.14 -3.85 4.79 -19.84 -0.10 -3.94 16 8 C -0.05 -1.13 3.07 -11.54 -0.04 -1.17 16 9 C -0.14 -2.90 9.00 71.98 0.65 -2.25 16 10 C -0.14 -2.96 9.00 71.98 0.65 -2.31 16 11 C -0.06 -1.81 8.17 22.51 0.18 -1.62 16 12 C -0.05 -1.71 5.50 -19.93 -0.11 -1.82 16 13 C -0.25 -11.03 5.30 -19.76 -0.10 -11.13 16 14 C -0.02 -1.00 8.85 22.41 0.20 -0.80 16 15 C -0.29 -14.51 9.76 22.55 0.22 -14.29 16 16 C 0.22 12.52 6.55 40.15 0.26 12.78 16 17 C -0.46 -24.83 9.11 23.37 0.21 -24.62 16 18 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 19 C 0.02 1.17 5.50 85.30 0.47 1.64 16 20 N -0.75 -40.29 11.44 21.85 0.25 -40.04 16 21 Si 0.99 37.61 29.56 68.60 2.03 39.63 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 23 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 25 N -0.52 -29.35 7.83 -188.16 -1.47 -30.82 16 26 C 0.13 6.48 10.70 85.27 0.91 7.39 16 27 H 0.07 1.19 7.67 -2.39 -0.02 1.17 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 30 H 0.16 3.45 6.29 -2.91 -0.02 3.44 16 31 H 0.08 1.78 7.11 -2.38 -0.02 1.76 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.17 7.37 -2.38 -0.02 1.15 16 35 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.20 7.38 -2.39 -0.02 1.18 16 38 H 0.14 4.28 7.06 -2.92 -0.02 4.26 16 39 H 0.11 4.66 7.77 -2.91 -0.02 4.64 16 40 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 41 H 0.28 13.58 8.29 -92.71 -0.77 12.82 16 42 H 0.13 5.85 8.04 -2.91 -0.02 5.82 16 Total: -1.00 -64.30 354.49 6.79 -57.51 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 1.03 Total: 27.11 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 5.04 Total: -39.05 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.22 Total: -70.86 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.81 Total: -11.44 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.73 Total: -2.91 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.63 kcal Total: -64.30 6.79 -57.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241787742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.986 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds