Wall clock time and date at job start Tue Mar 31 2020 10:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35807 * 117.00184 * 2 1 4 4 C 1.38550 * 120.10654 * 0.21049 * 3 2 1 5 5 C 1.38398 * 120.03486 * 180.23424 * 4 3 2 6 6 F 1.35103 * 119.86572 * 179.76485 * 5 4 3 7 7 C 1.38654 * 120.26338 * 359.78235 * 5 4 3 8 8 C 1.50693 * 119.89423 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47391 * 120.02134 * 8 7 5 10 10 C 1.52999 * 109.47414 * 240.02494 * 8 7 5 11 11 C 1.37926 * 120.21567 * 0.02562 * 7 5 4 12 12 C 1.39357 * 119.95721 * 359.97438 * 11 7 5 13 13 C 1.48262 * 120.12829 * 179.97438 * 12 11 7 14 14 C 1.40098 * 120.82124 * 309.99515 * 13 12 11 15 15 C 1.38454 * 119.41664 * 179.97438 * 14 13 12 16 16 N 1.31504 * 121.15739 * 0.02562 * 15 14 13 17 17 C 1.33667 * 121.80192 * 359.97438 * 16 15 14 18 18 C 1.41435 * 119.77505 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99664 * 187.07525 * 18 17 16 20 20 C 1.40021 * 120.00323 * 7.07643 * 18 17 16 21 21 N 1.30742 * 120.00374 * 182.55862 * 20 18 17 22 22 Si 1.86807 * 119.99952 * 2.55173 * 20 18 17 23 23 H 1.48500 * 109.47039 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47305 * 300.00350 * 22 20 18 25 25 H 1.48509 * 109.46782 * 60.00426 * 22 20 18 26 26 C 1.39383 * 120.83170 * 130.23727 * 13 12 11 27 27 H 1.09000 * 109.47149 * 300.00205 * 1 2 3 28 28 H 1.09000 * 109.46491 * 60.00321 * 1 2 3 29 29 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.97904 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47178 * 0.02562 * 8 7 5 32 32 H 1.09003 * 109.47238 * 60.00144 * 9 8 7 33 33 H 1.09004 * 109.47721 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47428 * 300.00570 * 9 8 7 35 35 H 1.09007 * 109.46806 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47154 * 299.99961 * 10 8 7 37 37 H 1.08998 * 109.46909 * 59.99940 * 10 8 7 38 38 H 1.08004 * 120.01693 * 179.97438 * 11 7 5 39 39 H 1.07999 * 120.29481 * 359.95919 * 14 13 12 40 40 H 1.07998 * 119.42654 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99756 * 354.84662 * 21 20 18 42 42 H 1.08006 * 120.58296 * 0.02918 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2100 0.0000 4 6 1.2933 2.3734 0.0044 5 6 1.9231 3.6058 -0.0005 6 9 1.1861 4.7380 -0.0010 7 6 3.3075 3.6829 -0.0053 8 6 3.9847 5.0291 -0.0112 9 6 4.8627 5.1639 1.2345 10 6 4.8536 5.1575 -1.2639 11 6 4.0669 2.5315 -0.0057 12 6 3.4421 1.2859 -0.0008 13 6 4.2547 0.0458 -0.0018 14 6 5.2911 -0.1326 -0.9275 15 6 6.0319 -1.3019 -0.9020 16 7 5.7795 -2.2483 -0.0245 17 6 4.8024 -2.1281 0.8797 18 6 4.5677 -3.1731 1.8034 19 1 3.7104 -3.1320 2.4590 20 6 5.4469 -4.2610 1.8680 21 7 5.2030 -5.2510 2.6864 22 14 6.9682 -4.2981 0.7846 23 1 7.7278 -5.5483 1.0404 24 1 6.5609 -4.2502 -0.6426 25 1 7.8252 -3.1255 1.0945 26 6 4.0034 -0.9737 0.9148 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2147 2.3186 0.0074 31 1 3.2299 5.8155 -0.0104 32 1 5.6176 4.3775 1.2338 33 1 5.3529 6.1374 1.2301 34 1 4.2437 5.0724 2.1270 35 1 5.3430 6.1315 -1.2683 36 1 5.6083 4.3712 -1.2647 37 1 4.2280 5.0616 -2.1514 38 1 5.1450 2.5954 -0.0099 39 1 5.5101 0.6353 -1.6547 40 1 6.8312 -1.4394 -1.6152 41 1 4.4551 -5.1984 3.3019 42 1 3.2104 -0.8761 1.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241788522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:39 Heat of formation + Delta-G solvation = -57.304549 kcal Electronic energy + Delta-G solvation = -25896.397096 eV Core-core repulsion = 22140.843638 eV Total energy + Delta-G solvation = -3755.553458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.96034 -40.26801 -38.44827 -37.94105 -35.02540 -33.81556 -32.46980 -30.40823 -29.55866 -28.89785 -27.24014 -27.20682 -25.50752 -23.36379 -23.21393 -21.72268 -20.67942 -19.86730 -18.54139 -18.07944 -17.08566 -16.04433 -15.95670 -15.90268 -15.37500 -14.98476 -14.86527 -14.62045 -14.27720 -14.02694 -13.96006 -13.46675 -13.41549 -12.93476 -12.72347 -12.57930 -12.46384 -12.33902 -12.11145 -12.09152 -11.88977 -11.38415 -11.34606 -10.94397 -10.85203 -10.80906 -10.59814 -10.56083 -10.05775 -9.58567 -9.29307 -9.09960 -8.51313 -7.96598 -7.73859 -7.66950 -7.21755 -4.76995 1.04941 1.29667 2.52543 2.57244 3.30114 3.59463 3.64551 3.73419 4.05822 4.20697 4.47573 4.50911 4.58868 4.66670 4.83600 4.95413 5.07798 5.09919 5.12799 5.23377 5.31600 5.47399 5.52387 5.53235 5.62051 5.66348 5.73151 5.73698 5.83064 5.98023 6.01326 6.06951 6.13070 6.21931 6.31196 6.40314 6.49896 6.58173 6.73570 6.98817 7.22372 7.39133 7.41395 7.47480 7.67691 8.08174 8.29711 8.64744 9.48553 10.01958 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003986 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.483432 B = 7022.124986 C = 8050.266972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.290 6.290 3 C 0.164 3.836 4 C -0.246 4.246 5 C 0.128 3.872 6 F -0.140 7.140 7 C -0.148 4.148 8 C -0.051 4.051 9 C -0.144 4.144 10 C -0.144 4.144 11 C -0.038 4.038 12 C -0.062 4.062 13 C 0.019 3.981 14 C -0.301 4.301 15 C 0.149 3.851 16 N -0.575 5.575 17 C 0.250 3.750 18 C -0.473 4.473 19 H 0.080 0.920 20 C 0.043 3.957 21 N -0.806 5.806 22 Si 1.156 2.844 23 H -0.334 1.334 24 H -0.279 1.279 25 H -0.293 1.293 26 C -0.220 4.220 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.140 0.860 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.282 0.718 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 17.135 -5.174 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.202 6.202 3 C 0.117 3.883 4 C -0.266 4.266 5 C 0.108 3.892 6 F -0.119 7.119 7 C -0.149 4.149 8 C -0.069 4.069 9 C -0.202 4.202 10 C -0.201 4.201 11 C -0.056 4.056 12 C -0.062 4.062 13 C 0.014 3.986 14 C -0.324 4.324 15 C -0.011 4.011 16 N -0.294 5.294 17 C 0.127 3.873 18 C -0.504 4.504 19 H 0.098 0.902 20 C -0.177 4.177 21 N -0.428 5.428 22 Si 0.991 3.009 23 H -0.268 1.268 24 H -0.207 1.207 25 H -0.222 1.222 26 C -0.242 4.242 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.156 0.844 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.146 0.854 41 H 0.093 0.907 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.960 15.249 -5.458 16.674 hybrid contribution -2.700 2.102 0.577 3.470 sum -6.660 17.351 -4.881 19.215 Atomic orbital electron populations 1.23116 0.78832 1.04247 1.00978 1.86322 1.20796 1.25510 1.87551 1.18748 0.91328 0.83923 0.94302 1.20977 1.00769 0.91004 1.13816 1.17166 0.88462 0.81296 1.02235 1.91445 1.77077 1.49443 1.93922 1.19646 0.91168 0.96530 1.07597 1.19959 0.97590 0.93156 0.96223 1.21869 0.99557 1.01853 0.96886 1.21863 0.99584 1.01855 0.96790 1.20759 1.00109 0.89046 0.95735 1.18409 0.89413 0.94085 1.04337 1.18400 0.93753 0.91240 0.95254 1.21120 1.03902 1.01390 1.05991 1.21992 0.95723 0.88983 0.94396 1.66496 1.22934 1.30555 1.09409 1.18590 0.87442 0.91570 0.89707 1.20773 1.10080 1.03490 1.16082 0.90163 1.27833 1.03241 0.89769 0.96902 1.70658 1.27741 1.29542 1.14819 0.81796 0.71333 0.72071 0.75701 1.26781 1.20678 1.22162 1.21660 1.04328 0.95235 1.02997 0.92722 0.92799 0.87963 0.84398 0.90345 0.92076 0.92368 0.92567 0.92381 0.92074 0.92606 0.84210 0.87795 0.85422 0.90680 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.29 -4.88 8.91 -19.13 -0.17 -5.05 16 3 C 0.16 2.68 6.61 -38.86 -0.26 2.42 16 4 C -0.25 -3.42 9.01 -39.41 -0.35 -3.78 16 5 C 0.13 1.76 7.24 -39.37 -0.29 1.47 16 6 F -0.14 -1.86 16.17 2.25 0.04 -1.82 16 7 C -0.15 -1.97 4.79 -104.59 -0.50 -2.47 16 8 C -0.05 -0.55 3.07 -91.78 -0.28 -0.83 16 9 C -0.14 -1.44 9.00 37.16 0.33 -1.10 16 10 C -0.14 -1.37 9.00 37.16 0.33 -1.04 16 11 C -0.04 -0.57 8.20 -39.28 -0.32 -0.89 16 12 C -0.06 -1.08 5.52 -104.76 -0.58 -1.66 16 13 C 0.02 0.40 5.29 -104.65 -0.55 -0.15 16 14 C -0.30 -6.06 9.66 -38.80 -0.37 -6.44 16 15 C 0.15 3.25 11.16 -17.61 -0.20 3.05 16 16 N -0.57 -14.57 4.54 -11.22 -0.05 -14.62 16 17 C 0.25 6.54 6.39 -85.02 -0.54 6.00 16 18 C -0.47 -12.97 9.58 -37.70 -0.36 -13.33 16 19 H 0.08 2.20 8.05 -52.48 -0.42 1.78 16 20 C 0.04 1.19 5.52 -17.35 -0.10 1.09 16 21 N -0.81 -22.12 13.65 55.55 0.76 -21.36 16 22 Si 1.16 28.60 25.56 -169.99 -4.34 24.26 16 23 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 24 H -0.28 -6.87 6.67 56.52 0.38 -6.49 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 C -0.22 -5.19 8.62 -38.33 -0.33 -5.53 16 27 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 28 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.14 1.59 6.30 -52.49 -0.33 1.26 16 31 H 0.08 0.84 7.11 -51.93 -0.37 0.47 16 32 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.14 1.91 7.08 -52.48 -0.37 1.54 16 39 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 41 H 0.28 7.40 8.72 -40.82 -0.36 7.04 16 42 H 0.11 2.45 7.76 -52.48 -0.41 2.05 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -29.70 350.10 -7.47 -37.17 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.60 Total: -1.94 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.37 Total: -21.91 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.71 Total: -35.98 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.17 Total: -5.05 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 28.60 SS G_CDS: -4.34 Total: 24.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.70 -7.47 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241788522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.138 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds