Wall clock time and date at job start Tue Mar 31 2020 10:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35807 * 117.00184 * 2 1 4 4 C 1.38550 * 120.10654 * 0.21049 * 3 2 1 5 5 C 1.38398 * 120.03486 * 180.23424 * 4 3 2 6 6 F 1.35103 * 119.86572 * 179.76485 * 5 4 3 7 7 C 1.38654 * 120.26338 * 359.78235 * 5 4 3 8 8 C 1.50693 * 119.89423 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47391 * 120.02134 * 8 7 5 10 10 C 1.52999 * 109.47414 * 240.02494 * 8 7 5 11 11 C 1.37926 * 120.21567 * 0.02562 * 7 5 4 12 12 C 1.39357 * 119.95721 * 359.97438 * 11 7 5 13 13 C 1.48262 * 120.12829 * 179.97438 * 12 11 7 14 14 C 1.40098 * 120.82124 * 309.99515 * 13 12 11 15 15 C 1.38454 * 119.41664 * 179.97438 * 14 13 12 16 16 N 1.31504 * 121.15739 * 0.02562 * 15 14 13 17 17 C 1.33667 * 121.80192 * 359.97438 * 16 15 14 18 18 C 1.41435 * 119.77505 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99664 * 187.07525 * 18 17 16 20 20 C 1.40021 * 120.00323 * 7.07643 * 18 17 16 21 21 N 1.30742 * 120.00374 * 182.55862 * 20 18 17 22 22 Si 1.86807 * 119.99952 * 2.55173 * 20 18 17 23 23 H 1.48500 * 109.47039 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47305 * 300.00350 * 22 20 18 25 25 H 1.48509 * 109.46782 * 60.00426 * 22 20 18 26 26 C 1.39383 * 120.83170 * 130.23727 * 13 12 11 27 27 H 1.09000 * 109.47149 * 300.00205 * 1 2 3 28 28 H 1.09000 * 109.46491 * 60.00321 * 1 2 3 29 29 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.97904 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47178 * 0.02562 * 8 7 5 32 32 H 1.09003 * 109.47238 * 60.00144 * 9 8 7 33 33 H 1.09004 * 109.47721 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47428 * 300.00570 * 9 8 7 35 35 H 1.09007 * 109.46806 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47154 * 299.99961 * 10 8 7 37 37 H 1.08998 * 109.46909 * 59.99940 * 10 8 7 38 38 H 1.08004 * 120.01693 * 179.97438 * 11 7 5 39 39 H 1.07999 * 120.29481 * 359.95919 * 14 13 12 40 40 H 1.07998 * 119.42654 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99756 * 354.84662 * 21 20 18 42 42 H 1.08006 * 120.58296 * 0.02918 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2100 0.0000 4 6 1.2933 2.3734 0.0044 5 6 1.9231 3.6058 -0.0005 6 9 1.1861 4.7380 -0.0010 7 6 3.3075 3.6829 -0.0053 8 6 3.9847 5.0291 -0.0112 9 6 4.8627 5.1639 1.2345 10 6 4.8536 5.1575 -1.2639 11 6 4.0669 2.5315 -0.0057 12 6 3.4421 1.2859 -0.0008 13 6 4.2547 0.0458 -0.0018 14 6 5.2911 -0.1326 -0.9275 15 6 6.0319 -1.3019 -0.9020 16 7 5.7795 -2.2483 -0.0245 17 6 4.8024 -2.1281 0.8797 18 6 4.5677 -3.1731 1.8034 19 1 3.7104 -3.1320 2.4590 20 6 5.4469 -4.2610 1.8680 21 7 5.2030 -5.2510 2.6864 22 14 6.9682 -4.2981 0.7846 23 1 7.7278 -5.5483 1.0404 24 1 6.5609 -4.2502 -0.6426 25 1 7.8252 -3.1255 1.0945 26 6 4.0034 -0.9737 0.9148 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2147 2.3186 0.0074 31 1 3.2299 5.8155 -0.0104 32 1 5.6176 4.3775 1.2338 33 1 5.3529 6.1374 1.2301 34 1 4.2437 5.0724 2.1270 35 1 5.3430 6.1315 -1.2683 36 1 5.6083 4.3712 -1.2647 37 1 4.2280 5.0616 -2.1514 38 1 5.1450 2.5954 -0.0099 39 1 5.5101 0.6353 -1.6547 40 1 6.8312 -1.4394 -1.6152 41 1 4.4551 -5.1984 3.3019 42 1 3.2104 -0.8761 1.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241788522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:38 Heat of formation + Delta-G solvation = -71.966003 kcal Electronic energy + Delta-G solvation = -25897.032864 eV Core-core repulsion = 22140.843638 eV Total energy + Delta-G solvation = -3756.189227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.04255 -41.49358 -40.18219 -39.02929 -36.15720 -35.63500 -33.98743 -32.26765 -30.76642 -30.14755 -28.22229 -27.97344 -27.40029 -24.80658 -24.29998 -23.28246 -22.28583 -21.05011 -20.07182 -19.49658 -18.22460 -17.58678 -17.12254 -16.98031 -16.70447 -16.49919 -16.36450 -15.93765 -15.55727 -15.34077 -14.96617 -14.87686 -14.54833 -14.50201 -14.20844 -14.03102 -13.97428 -13.66496 -13.34395 -13.04116 -12.98669 -12.58994 -12.48381 -12.46298 -12.19571 -11.91514 -11.82036 -11.68520 -11.62072 -11.56270 -11.28165 -10.60209 -9.85367 -9.78354 -9.62258 -9.21808 -9.01900 -6.79701 -0.19912 0.17710 0.71979 0.85967 1.63867 1.74957 2.09961 2.24108 2.42418 2.51734 2.70584 3.09895 3.51926 3.55445 3.57172 3.70723 3.98607 4.01161 4.13382 4.23658 4.29059 4.29522 4.35389 4.50223 4.60445 4.64676 4.65396 4.74624 4.76291 4.82452 4.83617 4.95711 5.00860 5.06472 5.12849 5.17166 5.31847 5.38678 5.39471 5.42650 5.48440 5.63506 5.70670 5.86903 6.03866 6.30994 6.40000 6.68842 7.60767 7.98213 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003986 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.483432 B = 7022.124986 C = 8050.266972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.155 3.845 4 C -0.241 4.241 5 C 0.131 3.869 6 F -0.134 7.134 7 C -0.143 4.143 8 C -0.050 4.050 9 C -0.144 4.144 10 C -0.142 4.142 11 C -0.030 4.030 12 C -0.097 4.097 13 C 0.032 3.968 14 C -0.275 4.275 15 C 0.132 3.868 16 N -0.595 5.595 17 C 0.238 3.762 18 C -0.514 4.514 19 H 0.058 0.942 20 C 0.016 3.984 21 N -0.835 5.835 22 Si 1.191 2.809 23 H -0.333 1.333 24 H -0.277 1.277 25 H -0.293 1.293 26 C -0.240 4.240 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.162 0.838 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.278 0.722 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 20.711 -7.330 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.108 3.892 4 C -0.260 4.260 5 C 0.111 3.889 6 F -0.113 7.113 7 C -0.144 4.144 8 C -0.069 4.069 9 C -0.201 4.201 10 C -0.199 4.199 11 C -0.048 4.048 12 C -0.098 4.098 13 C 0.026 3.974 14 C -0.297 4.297 15 C -0.026 4.026 16 N -0.314 5.314 17 C 0.114 3.886 18 C -0.547 4.547 19 H 0.076 0.924 20 C -0.200 4.200 21 N -0.459 5.459 22 Si 1.024 2.976 23 H -0.267 1.267 24 H -0.205 1.205 25 H -0.221 1.221 26 C -0.262 4.262 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.179 0.821 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.089 0.911 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.665 18.846 -7.625 20.658 hybrid contribution -2.925 1.367 1.084 3.406 sum -6.590 20.213 -6.542 22.244 Atomic orbital electron populations 1.23401 0.76484 1.05406 1.02667 1.86271 1.23461 1.26323 1.87724 1.18850 0.91213 0.84547 0.94594 1.21137 1.01889 0.90200 1.12780 1.17310 0.88836 0.81408 1.01325 1.91467 1.76980 1.49087 1.93749 1.19901 0.91071 0.97334 1.06131 1.20043 0.97933 0.91562 0.97312 1.21876 0.99267 1.02909 0.96082 1.21862 0.99323 1.02964 0.95795 1.20823 1.00744 0.88330 0.94857 1.18391 0.89925 0.93553 1.07929 1.18733 0.93492 0.91652 0.93561 1.21660 1.01791 1.01289 1.04996 1.22725 0.96881 0.88809 0.94223 1.66439 1.22833 1.32206 1.09939 1.18666 0.88272 0.91923 0.89735 1.20702 1.10613 1.05378 1.17964 0.92385 1.28582 1.04510 0.89575 0.97300 1.70679 1.28552 1.30314 1.16326 0.81336 0.69601 0.71888 0.74816 1.26665 1.20456 1.22099 1.21614 1.04472 0.95881 1.04255 0.91252 0.90736 0.87288 0.82101 0.89939 0.92422 0.90413 0.93330 0.90569 0.92097 0.92856 0.83026 0.83792 0.81568 0.91148 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -10.78 8.91 -91.38 -0.81 -11.60 16 3 C 0.15 4.84 6.61 22.74 0.15 4.99 16 4 C -0.24 -6.09 9.01 22.38 0.20 -5.88 16 5 C 0.13 3.20 7.24 22.41 0.16 3.36 16 6 F -0.13 -3.11 16.17 44.97 0.73 -2.38 16 7 C -0.14 -3.36 4.79 -19.84 -0.10 -3.45 16 8 C -0.05 -0.90 3.07 -11.54 -0.04 -0.94 16 9 C -0.14 -2.41 9.00 71.98 0.65 -1.76 16 10 C -0.14 -2.16 9.00 71.98 0.65 -1.51 16 11 C -0.03 -0.79 8.20 22.47 0.18 -0.60 16 12 C -0.10 -3.23 5.52 -19.95 -0.11 -3.34 16 13 C 0.03 1.29 5.29 -19.88 -0.11 1.18 16 14 C -0.28 -10.21 9.66 22.77 0.22 -9.99 16 15 C 0.13 5.40 11.16 84.79 0.95 6.34 16 16 N -0.59 -29.83 4.54 -189.40 -0.86 -30.69 16 17 C 0.24 12.79 6.39 40.19 0.26 13.05 16 18 C -0.51 -29.83 9.58 23.49 0.23 -29.60 16 19 H 0.06 3.47 8.05 -2.91 -0.02 3.45 16 20 C 0.02 0.90 5.52 85.29 0.47 1.37 16 21 N -0.84 -48.14 13.65 21.84 0.30 -47.85 16 22 Si 1.19 59.04 25.56 68.60 1.75 60.80 16 23 H -0.33 -16.16 7.11 99.48 0.71 -15.45 16 24 H -0.28 -13.43 6.67 99.48 0.66 -12.76 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 C -0.24 -11.58 8.62 23.08 0.20 -11.38 16 27 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 28 H 0.07 1.28 7.67 -2.39 -0.02 1.26 16 29 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.16 3.21 6.30 -2.91 -0.02 3.19 16 31 H 0.08 1.45 7.11 -2.39 -0.02 1.43 16 32 H 0.06 1.00 7.38 -2.39 -0.02 0.98 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.06 0.93 7.38 -2.39 -0.02 0.92 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.15 3.61 7.08 -2.91 -0.02 3.59 16 39 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.17 5.42 8.06 -2.91 -0.02 5.40 16 41 H 0.28 15.57 8.72 -92.71 -0.81 14.77 16 42 H 0.10 4.68 7.76 -2.91 -0.02 4.66 16 Total: -1.00 -66.58 350.10 7.14 -59.45 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.95 Total: 9.01 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 5.08 Total: -36.74 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -0.56 Total: -78.53 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.81 Total: -11.60 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.73 Total: -2.38 kcal Atomic # 14 Polarization: 59.04 SS G_CDS: 1.75 Total: 60.80 kcal Total: -66.58 7.14 -59.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241788522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.519 kcal (2) G-P(sol) polarization free energy of solvation -66.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds