Wall clock time and date at job start Tue Mar 31 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46874 * 2 1 4 4 C 1.53000 * 109.46874 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47338 * 180.02562 * 4 3 2 6 6 C 1.35833 * 117.00486 * 180.02562 * 5 4 3 7 7 C 1.38910 * 119.91763 * 359.97438 * 6 5 4 8 8 C 1.37786 * 120.11407 * 179.76614 * 7 6 5 9 9 C 1.39716 * 119.94883 * 0.52978 * 8 7 6 10 10 C 1.47834 * 120.07826 * 179.74571 * 9 8 7 11 11 C 1.39970 * 119.45825 * 359.72371 * 10 9 8 12 12 C 1.36554 * 119.46887 * 179.72347 * 11 10 9 13 13 C 1.41334 * 118.41980 * 0.27413 * 12 11 10 14 14 C 1.41016 * 120.54897 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00353 * 203.72433 * 14 13 12 16 16 C 1.39988 * 120.00211 * 23.72981 * 14 13 12 17 17 N 1.30812 * 120.00150 * 17.64736 * 16 14 13 18 18 Si 1.86804 * 120.00297 * 197.65593 * 16 14 13 19 19 H 1.48503 * 109.46987 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47434 * 119.99531 * 18 16 14 21 21 H 1.48499 * 109.47293 * 239.99702 * 18 16 14 22 22 C 1.40955 * 118.90087 * 0.02562 * 13 12 11 23 23 N 1.31255 * 120.40712 * 0.02562 * 22 13 12 24 24 C 1.39698 * 119.84044 * 359.47266 * 9 8 7 25 25 C 1.37946 * 119.88769 * 0.24973 * 24 9 8 26 26 F 1.35092 * 119.97766 * 180.02562 * 25 24 9 27 27 H 1.08998 * 109.46988 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47108 * 59.99574 * 1 2 3 29 29 H 1.08991 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47317 * 240.00517 * 2 1 3 31 31 H 1.08997 * 109.47387 * 119.99959 * 2 1 3 32 32 H 1.09006 * 109.46964 * 60.00486 * 3 2 1 33 33 H 1.08998 * 109.47601 * 300.00124 * 3 2 1 34 34 H 1.08998 * 109.46988 * 60.00142 * 4 3 2 35 35 H 1.08997 * 109.47387 * 299.99959 * 4 3 2 36 36 H 1.07997 * 119.94165 * 0.02562 * 7 6 5 37 37 H 1.08003 * 120.02659 * 180.25371 * 8 7 6 38 38 H 1.08005 * 120.26521 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.79177 * 180.30209 * 12 11 10 40 40 H 0.96997 * 120.00334 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.79722 * 179.97438 * 22 13 12 42 42 H 1.08003 * 120.05566 * 180.27642 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3929 2.9679 -0.0010 7 6 6.2376 1.8651 -0.0020 8 6 7.6042 2.0410 -0.0079 9 6 8.1414 3.3307 -0.0017 10 6 9.6073 3.5227 -0.0023 11 6 10.4481 2.4037 -0.0033 12 6 11.8021 2.5808 -0.0096 13 6 12.3078 3.9005 -0.0090 14 6 13.6983 4.1352 -0.0148 15 1 14.0900 5.0686 0.3618 16 6 14.5710 3.1585 -0.5088 17 7 14.1138 2.1967 -1.2684 18 14 16.3886 3.2284 -0.0830 19 1 16.6489 4.4056 0.7840 20 1 16.7767 1.9882 0.6357 21 1 17.1850 3.3473 -1.3307 22 6 11.3993 4.9782 -0.0014 23 7 10.1057 4.7565 0.0055 24 6 7.2902 4.4383 -0.0007 25 6 5.9230 4.2546 -0.0006 26 9 5.0981 5.3244 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9565 -0.8899 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 5.8224 0.8681 -0.0024 37 1 8.2596 1.1825 -0.0128 38 1 10.0293 1.4081 -0.0032 39 1 12.4706 1.7326 -0.0153 40 1 14.7184 1.5197 -1.6104 41 1 11.7700 5.9926 -0.0004 42 1 7.7017 5.4369 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243199698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:09 Heat of formation + Delta-G solvation = -56.954309 kcal Electronic energy + Delta-G solvation = -24300.280995 eV Core-core repulsion = 20544.742725 eV Total energy + Delta-G solvation = -3755.538271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.40295 -39.82126 -38.63186 -37.08163 -35.32451 -34.30052 -31.29470 -31.03733 -30.18700 -29.77751 -28.37415 -25.53577 -24.37795 -22.70289 -22.49212 -21.56817 -20.84901 -20.53469 -18.10417 -17.60846 -16.81868 -16.54819 -16.32552 -15.64784 -15.35602 -14.95547 -14.64426 -14.59907 -14.43625 -14.16568 -13.84991 -13.54110 -13.14890 -12.90875 -12.67313 -12.62457 -12.26281 -12.18078 -11.82839 -11.70038 -11.53848 -11.48459 -11.42334 -11.33680 -11.06034 -11.02806 -10.80655 -10.68144 -10.61583 -9.98772 -9.58851 -8.64786 -8.44581 -8.30984 -8.15924 -7.28188 -7.04905 -4.63669 1.36710 1.54857 2.54918 2.86618 2.90444 2.95382 3.05218 3.14415 3.67254 3.98087 4.50351 4.51139 4.57255 4.63595 4.74673 4.95407 5.00678 5.09105 5.22857 5.24964 5.40936 5.43988 5.46708 5.54858 5.55702 5.67429 5.77328 5.88876 5.93091 5.95767 6.02214 6.19304 6.39895 6.45409 6.51494 6.59083 6.75118 6.85610 7.01865 7.03199 7.14404 7.50239 7.61707 7.68587 7.78645 8.22815 8.41931 8.51957 9.46389 9.78322 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.002256 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.254475 B =12410.006202 C =13264.878316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.059 3.941 5 O -0.314 6.314 6 C 0.063 3.937 7 C -0.174 4.174 8 C -0.107 4.107 9 C 0.018 3.982 10 C -0.011 4.011 11 C -0.119 4.119 12 C -0.145 4.145 13 C 0.068 3.932 14 C -0.429 4.429 15 H 0.089 0.911 16 C 0.071 3.929 17 N -0.773 5.773 18 Si 0.916 3.084 19 H -0.256 1.256 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.014 4.014 23 N -0.447 5.447 24 C -0.113 4.113 25 C 0.072 3.928 26 F -0.140 7.140 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.288 0.712 41 H 0.131 0.869 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 -6.274 1.627 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.016 4.016 5 O -0.228 6.228 6 C 0.017 3.983 7 C -0.193 4.193 8 C -0.126 4.126 9 C 0.017 3.983 10 C -0.144 4.144 11 C -0.139 4.139 12 C -0.170 4.170 13 C 0.063 3.937 14 C -0.457 4.457 15 H 0.107 0.893 16 C -0.150 4.150 17 N -0.396 5.396 18 Si 0.740 3.260 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.196 1.196 22 C -0.180 4.180 23 N -0.154 5.154 24 C -0.133 4.133 25 C 0.052 3.948 26 F -0.119 7.119 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.226 -5.628 1.485 16.301 hybrid contribution 1.467 -0.902 0.012 1.722 sum -13.759 -6.530 1.497 15.304 Atomic orbital electron populations 1.21747 0.95274 1.01771 1.02094 1.21436 0.96340 0.95719 1.02439 1.21572 0.92766 0.97595 1.03756 1.22797 0.95131 0.82312 1.01355 1.86020 1.18576 1.28736 1.89486 1.18872 0.82764 0.92857 1.03815 1.20887 0.93821 0.97051 1.07536 1.21057 0.93828 0.97072 1.00677 1.18422 0.92043 0.91397 0.96450 1.18601 0.90263 0.89233 1.16337 1.21277 0.94608 0.97326 1.00698 1.21321 0.93536 0.97895 1.04244 1.18645 0.94299 0.92291 0.88431 1.19741 0.90880 1.02024 1.33051 0.89311 1.26119 1.02556 0.93970 0.92376 1.69794 1.38572 1.10517 1.20708 0.86111 0.80460 0.79899 0.79574 1.17938 1.19351 1.19583 1.22455 0.87578 0.97897 1.10108 1.66912 1.16271 1.23309 1.08919 1.21119 0.89191 1.01472 1.01506 1.16907 0.87786 0.80664 1.09462 1.91444 1.71905 1.54063 1.94506 0.92560 0.92560 0.92539 0.91652 0.91658 0.90846 0.90844 0.92122 0.92142 0.85227 0.85142 0.88004 0.85475 0.90128 0.85192 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -1.03 5.58 -26.73 -0.15 -1.18 16 4 C 0.06 0.63 4.74 37.16 0.18 0.81 16 5 O -0.31 -4.70 9.99 -19.21 -0.19 -4.90 16 6 C 0.06 1.03 6.70 -38.99 -0.26 0.77 16 7 C -0.17 -2.59 9.02 -39.50 -0.36 -2.95 16 8 C -0.11 -1.79 9.41 -39.19 -0.37 -2.16 16 9 C 0.02 0.36 5.88 -104.87 -0.62 -0.26 16 10 C -0.01 -0.25 6.74 -82.75 -0.56 -0.81 16 11 C -0.12 -2.65 9.38 -39.54 -0.37 -3.02 16 12 C -0.15 -3.52 8.74 -39.01 -0.34 -3.86 16 13 C 0.07 1.70 5.59 -106.64 -0.60 1.10 16 14 C -0.43 -10.30 9.06 -37.87 -0.34 -10.64 16 15 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16 16 C 0.07 1.61 5.17 -17.33 -0.09 1.52 16 17 N -0.77 -18.10 10.92 55.55 0.61 -17.50 16 18 Si 0.92 16.77 29.59 -169.99 -5.03 11.74 16 19 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 22 C -0.01 -0.35 10.97 -16.77 -0.18 -0.53 16 23 N -0.45 -10.69 9.38 -9.11 -0.09 -10.77 16 24 C -0.11 -2.18 9.54 -39.14 -0.37 -2.55 16 25 C 0.07 1.30 7.30 -39.35 -0.29 1.01 16 26 F -0.14 -2.58 17.10 2.25 0.04 -2.54 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 35 H 0.06 0.58 7.65 -51.93 -0.40 0.19 16 36 H 0.13 1.51 6.28 -52.49 -0.33 1.18 16 37 H 0.13 1.97 6.14 -52.48 -0.32 1.65 16 38 H 0.10 1.95 6.14 -52.48 -0.32 1.63 16 39 H 0.13 3.10 6.19 -52.49 -0.32 2.78 16 40 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 41 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 42 H 0.15 2.90 7.52 -52.48 -0.39 2.50 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -26.88 356.80 -9.22 -36.09 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.42 Total: 6.77 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -4.51 Total: -24.28 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.52 Total: -28.27 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.19 Total: -4.90 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.88 -9.22 -36.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243199698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.863 kcal (2) G-P(sol) polarization free energy of solvation -26.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds