Wall clock time and date at job start Tue Mar 31 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46874 * 2 1 4 4 C 1.53000 * 109.46874 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47338 * 180.02562 * 4 3 2 6 6 C 1.35833 * 117.00486 * 180.02562 * 5 4 3 7 7 C 1.38910 * 119.91763 * 359.97438 * 6 5 4 8 8 C 1.37786 * 120.11407 * 179.76614 * 7 6 5 9 9 C 1.39716 * 119.94883 * 0.52978 * 8 7 6 10 10 C 1.47834 * 120.07826 * 179.74571 * 9 8 7 11 11 C 1.39970 * 119.45825 * 359.72371 * 10 9 8 12 12 C 1.36554 * 119.46887 * 179.72347 * 11 10 9 13 13 C 1.41334 * 118.41980 * 0.27413 * 12 11 10 14 14 C 1.41016 * 120.54897 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00353 * 203.72433 * 14 13 12 16 16 C 1.39988 * 120.00211 * 23.72981 * 14 13 12 17 17 N 1.30812 * 120.00150 * 17.64736 * 16 14 13 18 18 Si 1.86804 * 120.00297 * 197.65593 * 16 14 13 19 19 H 1.48503 * 109.46987 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47434 * 119.99531 * 18 16 14 21 21 H 1.48499 * 109.47293 * 239.99702 * 18 16 14 22 22 C 1.40955 * 118.90087 * 0.02562 * 13 12 11 23 23 N 1.31255 * 120.40712 * 0.02562 * 22 13 12 24 24 C 1.39698 * 119.84044 * 359.47266 * 9 8 7 25 25 C 1.37946 * 119.88769 * 0.24973 * 24 9 8 26 26 F 1.35092 * 119.97766 * 180.02562 * 25 24 9 27 27 H 1.08998 * 109.46988 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47108 * 59.99574 * 1 2 3 29 29 H 1.08991 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47317 * 240.00517 * 2 1 3 31 31 H 1.08997 * 109.47387 * 119.99959 * 2 1 3 32 32 H 1.09006 * 109.46964 * 60.00486 * 3 2 1 33 33 H 1.08998 * 109.47601 * 300.00124 * 3 2 1 34 34 H 1.08998 * 109.46988 * 60.00142 * 4 3 2 35 35 H 1.08997 * 109.47387 * 299.99959 * 4 3 2 36 36 H 1.07997 * 119.94165 * 0.02562 * 7 6 5 37 37 H 1.08003 * 120.02659 * 180.25371 * 8 7 6 38 38 H 1.08005 * 120.26521 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.79177 * 180.30209 * 12 11 10 40 40 H 0.96997 * 120.00334 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.79722 * 179.97438 * 22 13 12 42 42 H 1.08003 * 120.05566 * 180.27642 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3929 2.9679 -0.0010 7 6 6.2376 1.8651 -0.0020 8 6 7.6042 2.0410 -0.0079 9 6 8.1414 3.3307 -0.0017 10 6 9.6073 3.5227 -0.0023 11 6 10.4481 2.4037 -0.0033 12 6 11.8021 2.5808 -0.0096 13 6 12.3078 3.9005 -0.0090 14 6 13.6983 4.1352 -0.0148 15 1 14.0900 5.0686 0.3618 16 6 14.5710 3.1585 -0.5088 17 7 14.1138 2.1967 -1.2684 18 14 16.3886 3.2284 -0.0830 19 1 16.6489 4.4056 0.7840 20 1 16.7767 1.9882 0.6357 21 1 17.1850 3.3473 -1.3307 22 6 11.3993 4.9782 -0.0014 23 7 10.1057 4.7565 0.0055 24 6 7.2902 4.4383 -0.0007 25 6 5.9230 4.2546 -0.0006 26 9 5.0981 5.3244 -0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9565 -0.8899 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 5.8224 0.8681 -0.0024 37 1 8.2596 1.1825 -0.0128 38 1 10.0293 1.4081 -0.0032 39 1 12.4706 1.7326 -0.0153 40 1 14.7184 1.5197 -1.6104 41 1 11.7700 5.9926 -0.0004 42 1 7.7017 5.4369 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243199698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:08 Heat of formation + Delta-G solvation = -68.311788 kcal Electronic energy + Delta-G solvation = -24300.773493 eV Core-core repulsion = 20544.742725 eV Total energy + Delta-G solvation = -3756.030768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.82541 -41.11237 -40.24966 -38.42501 -36.15827 -35.86984 -32.84546 -32.74873 -31.59842 -30.82978 -29.68911 -27.16107 -25.40196 -24.17500 -23.89751 -22.75653 -22.10626 -21.83105 -19.41385 -19.28776 -18.25472 -17.73973 -17.47374 -17.26694 -16.52457 -16.47846 -16.16083 -15.90701 -15.46974 -15.42172 -15.14374 -14.74999 -14.54406 -14.26316 -13.88729 -13.75070 -13.62197 -13.57219 -13.27909 -13.14772 -12.96438 -12.71954 -12.61727 -12.32654 -12.15675 -12.00104 -11.86621 -11.86118 -11.65049 -11.45095 -11.23849 -10.27670 -10.07191 -9.97137 -9.80991 -8.89582 -8.69118 -6.44123 -0.09936 0.18256 0.90978 1.10843 1.39786 1.52050 1.55888 2.07541 2.15483 2.47102 2.86040 3.20834 3.65414 3.72306 3.74721 3.93643 3.93991 4.03427 4.15757 4.23184 4.35286 4.36952 4.41885 4.58099 4.64756 4.69400 4.74189 4.84387 4.86868 4.92955 4.99280 5.03631 5.09093 5.14345 5.17196 5.24889 5.30907 5.33462 5.44841 5.55283 5.65652 5.81045 5.90346 6.00302 6.36196 6.43528 6.65122 6.72347 7.65826 8.13187 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.002256 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.254475 B =12410.006202 C =13264.878316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.116 4.116 4 C 0.048 3.952 5 O -0.328 6.328 6 C 0.079 3.921 7 C -0.161 4.161 8 C -0.092 4.092 9 C -0.015 4.015 10 C -0.012 4.012 11 C -0.121 4.121 12 C -0.161 4.161 13 C 0.041 3.959 14 C -0.461 4.461 15 H 0.090 0.910 16 C 0.035 3.965 17 N -0.804 5.804 18 Si 0.990 3.010 19 H -0.255 1.255 20 H -0.261 1.261 21 H -0.264 1.264 22 C -0.037 4.037 23 N -0.464 5.464 24 C -0.118 4.118 25 C 0.050 3.950 26 F -0.147 7.147 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.297 0.703 41 H 0.137 0.863 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 -8.801 1.796 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.154 4.154 4 C -0.026 4.026 5 O -0.242 6.242 6 C 0.033 3.967 7 C -0.179 4.179 8 C -0.111 4.111 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.186 4.186 13 C 0.036 3.964 14 C -0.489 4.489 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.427 5.427 18 Si 0.810 3.190 19 H -0.179 1.179 20 H -0.185 1.185 21 H -0.189 1.189 22 C -0.201 4.201 23 N -0.171 5.171 24 C -0.138 4.138 25 C 0.030 3.970 26 F -0.126 7.126 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.190 0.810 37 H 0.170 0.830 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.425 -8.145 1.652 18.408 hybrid contribution 1.486 -0.181 -0.057 1.498 sum -14.939 -8.326 1.595 17.177 Atomic orbital electron populations 1.21761 0.94923 1.02352 1.01999 1.21424 0.96616 0.94286 1.03173 1.21589 0.91562 0.98942 1.03299 1.23209 0.96200 0.80349 1.02888 1.86040 1.17514 1.31800 1.88871 1.18993 0.83899 0.92404 1.01440 1.21255 0.92683 0.98465 1.05542 1.21306 0.95029 0.96205 0.98571 1.18427 0.90478 0.93047 0.99636 1.19155 0.92048 0.88915 1.14595 1.21574 0.93887 0.98860 0.99787 1.21391 0.94467 0.97498 1.05274 1.18946 0.95141 0.92909 0.89370 1.19972 0.91158 1.03113 1.34628 0.89164 1.26940 1.06743 0.93104 0.91531 1.69814 1.40465 1.11224 1.21230 0.85022 0.74676 0.79962 0.79357 1.17856 1.18547 1.18899 1.22627 0.87903 0.98327 1.11254 1.66955 1.16168 1.24401 1.09624 1.20991 0.89935 1.00870 1.01970 1.17007 0.87415 0.81564 1.10989 1.91421 1.71878 1.54559 1.94694 0.92681 0.92717 0.91632 0.90930 0.90885 0.91343 0.91397 0.90512 0.90450 0.80965 0.83025 0.84682 0.86048 0.89168 0.84545 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.21 5.93 30.60 0.18 -1.03 16 3 C -0.12 -1.70 5.58 30.60 0.17 -1.53 16 4 C 0.05 0.83 4.74 71.98 0.34 1.17 16 5 O -0.33 -8.93 9.99 -91.67 -0.92 -9.84 16 6 C 0.08 2.40 6.70 22.65 0.15 2.55 16 7 C -0.16 -4.15 9.02 22.32 0.20 -3.94 16 8 C -0.09 -2.81 9.41 22.52 0.21 -2.60 16 9 C -0.01 -0.57 5.88 -20.03 -0.12 -0.69 16 10 C -0.01 -0.57 6.74 41.92 0.28 -0.29 16 11 C -0.12 -5.39 9.38 22.30 0.21 -5.18 16 12 C -0.16 -7.99 8.74 22.64 0.20 -7.79 16 13 C 0.04 2.13 5.59 -21.17 -0.12 2.01 16 14 C -0.46 -22.89 9.06 23.38 0.21 -22.68 16 15 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 16 C 0.04 1.61 5.17 85.27 0.44 2.05 16 17 N -0.80 -38.10 10.92 21.83 0.24 -37.86 16 18 Si 0.99 34.30 29.59 68.60 2.03 36.33 16 19 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 20 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 21 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 22 C -0.04 -1.86 10.97 85.44 0.94 -0.93 16 23 N -0.46 -22.99 9.38 -182.74 -1.71 -24.71 16 24 C -0.12 -4.58 9.54 22.55 0.22 -4.36 16 25 C 0.05 1.78 7.30 22.42 0.16 1.95 16 26 F -0.15 -5.39 17.10 44.97 0.77 -4.62 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.13 7.65 -2.39 -0.02 1.11 16 35 H 0.08 1.13 7.65 -2.39 -0.02 1.11 16 36 H 0.17 2.97 6.28 -2.91 -0.02 2.96 16 37 H 0.15 3.96 6.14 -2.91 -0.02 3.94 16 38 H 0.14 4.91 6.14 -2.91 -0.02 4.89 16 39 H 0.12 6.06 6.19 -2.91 -0.02 6.04 16 40 H 0.30 12.47 8.30 -92.71 -0.77 11.70 16 41 H 0.14 6.39 8.06 -2.91 -0.02 6.37 16 42 H 0.13 5.41 7.52 -2.91 -0.02 5.39 16 Total: -1.00 -60.00 356.80 5.84 -54.16 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 1.04 Total: 28.59 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 4.39 Total: -42.04 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.48 Total: -62.57 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.92 Total: -9.84 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.77 Total: -4.62 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.03 Total: 36.33 kcal Total: -60.00 5.84 -54.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243199698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.155 kcal (2) G-P(sol) polarization free energy of solvation -59.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds