Wall clock time and date at job start Tue Mar 31 2020 11:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47379 * 2 1 4 4 C 1.53000 * 109.46860 * 180.02562 * 3 2 1 5 5 O 1.42911 * 109.46641 * 179.42730 * 4 3 2 6 6 C 1.35837 * 116.99695 * 174.62473 * 5 4 3 7 7 C 1.38600 * 120.10453 * 4.50505 * 6 5 4 8 8 C 1.38148 * 120.09371 * 180.27790 * 7 6 5 9 9 C 1.38625 * 120.30070 * 359.74166 * 8 7 6 10 10 F 1.35095 * 119.89933 * 179.97438 * 9 8 7 11 11 C 1.38146 * 120.19727 * 0.02562 * 9 8 7 12 12 C 1.39403 * 119.90656 * 359.97438 * 11 9 8 13 13 C 1.48184 * 120.14861 * 179.97438 * 12 11 9 14 14 C 1.39975 * 119.61317 * 356.16037 * 13 12 11 15 15 C 1.38654 * 119.46248 * 179.97438 * 14 13 12 16 16 C 1.38322 * 118.69696 * 359.74245 * 15 14 13 17 17 C 1.40680 * 119.19267 * 0.50542 * 16 15 14 18 18 C 1.41362 * 119.75965 * 179.76720 * 17 16 15 19 19 H 1.08002 * 119.99870 * 335.11922 * 18 17 16 20 20 C 1.40008 * 119.99892 * 155.12432 * 18 17 16 21 21 N 1.30751 * 120.00161 * 338.68876 * 20 18 17 22 22 Si 1.86803 * 119.99913 * 158.41796 * 20 18 17 23 23 H 1.48499 * 109.47025 * 270.27328 * 22 20 18 24 24 H 1.48497 * 109.47283 * 30.27546 * 22 20 18 25 25 H 1.48504 * 109.47149 * 150.27332 * 22 20 18 26 26 N 1.32262 * 119.61416 * 176.13683 * 13 12 11 27 27 H 1.08995 * 109.46934 * 59.99646 * 1 2 3 28 28 H 1.08994 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46750 * 300.00071 * 1 2 3 30 30 H 1.09003 * 109.46992 * 239.99601 * 2 1 3 31 31 H 1.08996 * 109.47341 * 120.00004 * 2 1 3 32 32 H 1.08996 * 109.47237 * 60.00228 * 3 2 1 33 33 H 1.09004 * 109.46829 * 300.00020 * 3 2 1 34 34 H 1.08996 * 109.47363 * 59.43195 * 4 3 2 35 35 H 1.08991 * 109.47611 * 299.42269 * 4 3 2 36 36 H 1.08006 * 119.94869 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.85065 * 179.72231 * 8 7 6 38 38 H 1.08002 * 120.04225 * 180.02562 * 11 9 8 39 39 H 1.08007 * 120.26759 * 359.97438 * 14 13 12 40 40 H 1.07997 * 120.65263 * 180.02562 * 15 14 13 41 41 H 1.07992 * 120.40227 * 180.24228 * 16 15 14 42 42 H 0.96997 * 119.99873 * 354.51493 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 8 4.0464 2.7897 -0.0141 6 6 5.3881 2.9704 0.0969 7 6 6.2374 1.8754 0.1224 8 6 7.6014 2.0593 0.2412 9 6 8.1297 3.3379 0.3300 10 9 9.4648 3.5083 0.4464 11 6 7.2949 4.4382 0.3010 12 6 5.9172 4.2624 0.1814 13 6 5.0167 5.4388 0.1503 14 6 5.5489 6.7219 0.3226 15 6 4.7035 7.8205 0.2924 16 6 3.3516 7.6129 0.0861 17 6 2.8760 6.2988 -0.0753 18 6 1.4960 6.0724 -0.2818 19 1 0.7721 6.7929 0.0693 20 6 1.0677 4.9142 -0.9415 21 7 1.8920 4.2619 -1.7191 22 14 -0.6794 4.2965 -0.7049 23 1 -0.7222 3.3629 0.4491 24 1 -1.5804 5.4477 -0.4441 25 1 -1.1243 3.5878 -1.9318 26 7 3.7196 5.2642 -0.0403 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9198 -0.8857 35 1 3.9338 0.9374 0.8941 36 1 5.8317 0.8767 0.0543 37 1 8.2592 1.2030 0.2652 38 1 7.7092 5.4332 0.3700 39 1 6.6094 6.8551 0.4777 40 1 5.0936 8.8191 0.4227 41 1 2.6690 8.4490 0.0536 42 1 2.7737 4.6223 -1.9021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243235182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:38 Heat of formation + Delta-G solvation = -45.411676 kcal Electronic energy + Delta-G solvation = -26470.502304 eV Core-core repulsion = 22715.464559 eV Total energy + Delta-G solvation = -3755.037745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.53566 -39.79691 -38.18632 -36.88790 -34.67424 -33.83566 -31.98384 -30.62652 -29.60719 -29.10718 -27.98391 -25.38456 -24.05949 -23.17811 -21.91996 -20.95523 -20.86556 -20.33755 -18.10268 -17.55975 -16.85237 -16.15392 -15.87670 -15.25087 -14.95318 -14.73556 -14.53747 -14.34323 -14.20663 -14.03076 -13.65885 -13.19557 -12.96602 -12.75827 -12.60238 -12.38698 -12.18317 -11.85143 -11.69901 -11.58322 -11.31511 -11.15681 -10.84501 -10.76840 -10.63532 -10.54670 -10.45961 -10.25129 -10.02941 -9.71659 -9.22794 -8.93465 -8.34739 -7.91057 -7.87141 -7.20471 -6.93495 -4.50838 1.20111 1.59419 2.74509 2.87338 3.17104 3.24489 3.33675 3.72605 3.99743 4.05874 4.53972 4.76830 4.89257 5.00654 5.19722 5.21356 5.30258 5.35135 5.43236 5.51077 5.63898 5.69117 5.85359 5.89223 5.95348 6.02797 6.04437 6.07467 6.13642 6.28538 6.31275 6.37259 6.44080 6.49917 6.61141 6.64373 6.86596 6.93554 7.03155 7.12129 7.45912 7.58087 7.79346 7.89669 8.03084 8.10025 8.70128 8.85262 9.80888 10.23660 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.006177 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.286508 B = 4532.020110 C = 6888.285022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.125 4.125 4 C 0.059 3.941 5 O -0.237 6.237 6 C 0.158 3.842 7 C -0.200 4.200 8 C -0.115 4.115 9 C 0.041 3.959 10 F -0.149 7.149 11 C -0.102 4.102 12 C -0.034 4.034 13 C 0.189 3.811 14 C -0.304 4.304 15 C -0.054 4.054 16 C -0.270 4.270 17 C 0.250 3.750 18 C -0.496 4.496 19 H 0.077 0.923 20 C 0.046 3.954 21 N -0.748 5.748 22 Si 1.055 2.945 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.276 1.276 26 N -0.501 5.501 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -7.997 2.038 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.163 4.163 4 C -0.017 4.017 5 O -0.146 6.146 6 C 0.109 3.891 7 C -0.219 4.219 8 C -0.134 4.134 9 C 0.022 3.978 10 F -0.128 7.128 11 C -0.122 4.122 12 C -0.036 4.036 13 C 0.045 3.955 14 C -0.327 4.327 15 C -0.078 4.078 16 C -0.293 4.293 17 C 0.126 3.874 18 C -0.527 4.527 19 H 0.096 0.904 20 C -0.182 4.182 21 N -0.369 5.369 22 Si 0.880 3.120 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.201 1.201 26 N -0.215 5.215 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.244 -9.891 1.455 10.074 hybrid contribution 1.959 2.054 0.670 2.916 sum 3.203 -7.837 2.125 8.729 Atomic orbital electron populations 1.21756 0.95657 1.01044 1.02462 1.21415 0.96190 0.96569 1.01337 1.21649 0.92349 0.96391 1.05873 1.22785 0.96319 0.83077 0.99522 1.86758 1.16418 1.26434 1.85028 1.19255 0.84418 0.92583 0.92892 1.21025 0.93141 0.98527 1.09203 1.20805 0.95384 0.95543 1.01690 1.17299 0.77159 0.94038 1.09292 1.91438 1.30666 1.96373 1.94277 1.21003 0.91850 0.98622 1.00727 1.18031 0.91410 0.90661 1.03461 1.19248 0.91044 0.89454 0.95722 1.21112 0.98589 0.93112 1.19910 1.20820 0.93834 0.96810 0.96311 1.21844 0.94754 0.97817 1.14865 1.18560 0.93213 0.86685 0.88990 1.20420 0.90797 1.07337 1.34100 0.90445 1.26654 1.05934 0.93030 0.92554 1.70069 1.09670 1.36191 1.21010 0.83812 0.73516 0.76996 0.77719 1.19683 1.20585 1.20119 1.68430 1.00982 1.33114 1.19010 0.92306 0.93052 0.92631 0.92176 0.92594 0.91254 0.87889 0.93021 0.93542 0.84864 0.85210 0.84066 0.88279 0.88338 0.88215 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.53 5.93 -26.73 -0.16 -1.69 16 3 C -0.13 -2.12 5.58 -26.73 -0.15 -2.27 16 4 C 0.06 0.98 4.75 37.16 0.18 1.16 16 5 O -0.24 -4.97 7.97 -19.23 -0.15 -5.12 16 6 C 0.16 3.09 6.68 -38.84 -0.26 2.83 16 7 C -0.20 -3.17 9.02 -39.48 -0.36 -3.52 16 8 C -0.11 -1.70 10.01 -39.47 -0.40 -2.10 16 9 C 0.04 0.67 7.29 -39.47 -0.29 0.39 16 10 F -0.15 -2.35 17.26 2.25 0.04 -2.31 16 11 C -0.10 -1.82 9.39 -39.18 -0.37 -2.19 16 12 C -0.03 -0.70 5.89 -104.77 -0.62 -1.32 16 13 C 0.19 4.50 6.73 -82.95 -0.56 3.94 16 14 C -0.30 -6.73 9.47 -38.78 -0.37 -7.10 16 15 C -0.05 -1.20 10.15 -39.40 -0.40 -1.60 16 16 C -0.27 -6.59 9.83 -38.63 -0.38 -6.97 16 17 C 0.25 6.64 6.01 -85.01 -0.51 6.13 16 18 C -0.50 -12.97 9.05 -37.73 -0.34 -13.31 16 19 H 0.08 1.96 7.93 -52.49 -0.42 1.55 16 20 C 0.05 1.14 5.27 -17.35 -0.09 1.04 16 21 N -0.75 -18.91 11.92 55.55 0.66 -18.25 16 22 Si 1.05 21.01 29.98 -169.99 -5.10 15.91 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 26 N -0.50 -13.00 5.82 -7.69 -0.04 -13.05 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.10 2.02 6.89 -51.93 -0.36 1.66 16 34 H 0.05 0.78 7.78 -51.93 -0.40 0.38 16 35 H 0.05 0.68 7.55 -51.93 -0.39 0.28 16 36 H 0.13 1.76 6.32 -52.48 -0.33 1.43 16 37 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.14 2.33 6.19 -52.49 -0.32 2.00 16 39 H 0.10 1.91 6.19 -52.48 -0.33 1.59 16 40 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.31 8.36 6.71 -40.82 -0.27 8.08 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -27.40 353.82 -9.38 -36.78 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.43 Total: 8.82 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -4.70 Total: -28.12 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.62 Total: -31.30 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.15 Total: -5.12 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.10 Total: 15.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.40 -9.38 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243235182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.628 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds