Wall clock time and date at job start Tue Mar 31 2020 11:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47379 * 2 1 4 4 C 1.53000 * 109.46860 * 180.02562 * 3 2 1 5 5 O 1.42911 * 109.46641 * 179.42730 * 4 3 2 6 6 C 1.35837 * 116.99695 * 174.62473 * 5 4 3 7 7 C 1.38600 * 120.10453 * 4.50505 * 6 5 4 8 8 C 1.38148 * 120.09371 * 180.27790 * 7 6 5 9 9 C 1.38625 * 120.30070 * 359.74166 * 8 7 6 10 10 F 1.35095 * 119.89933 * 179.97438 * 9 8 7 11 11 C 1.38146 * 120.19727 * 0.02562 * 9 8 7 12 12 C 1.39403 * 119.90656 * 359.97438 * 11 9 8 13 13 C 1.48184 * 120.14861 * 179.97438 * 12 11 9 14 14 C 1.39975 * 119.61317 * 356.16037 * 13 12 11 15 15 C 1.38654 * 119.46248 * 179.97438 * 14 13 12 16 16 C 1.38322 * 118.69696 * 359.74245 * 15 14 13 17 17 C 1.40680 * 119.19267 * 0.50542 * 16 15 14 18 18 C 1.41362 * 119.75965 * 179.76720 * 17 16 15 19 19 H 1.08002 * 119.99870 * 335.11922 * 18 17 16 20 20 C 1.40008 * 119.99892 * 155.12432 * 18 17 16 21 21 N 1.30751 * 120.00161 * 338.68876 * 20 18 17 22 22 Si 1.86803 * 119.99913 * 158.41796 * 20 18 17 23 23 H 1.48499 * 109.47025 * 270.27328 * 22 20 18 24 24 H 1.48497 * 109.47283 * 30.27546 * 22 20 18 25 25 H 1.48504 * 109.47149 * 150.27332 * 22 20 18 26 26 N 1.32262 * 119.61416 * 176.13683 * 13 12 11 27 27 H 1.08995 * 109.46934 * 59.99646 * 1 2 3 28 28 H 1.08994 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46750 * 300.00071 * 1 2 3 30 30 H 1.09003 * 109.46992 * 239.99601 * 2 1 3 31 31 H 1.08996 * 109.47341 * 120.00004 * 2 1 3 32 32 H 1.08996 * 109.47237 * 60.00228 * 3 2 1 33 33 H 1.09004 * 109.46829 * 300.00020 * 3 2 1 34 34 H 1.08996 * 109.47363 * 59.43195 * 4 3 2 35 35 H 1.08991 * 109.47611 * 299.42269 * 4 3 2 36 36 H 1.08006 * 119.94869 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.85065 * 179.72231 * 8 7 6 38 38 H 1.08002 * 120.04225 * 180.02562 * 11 9 8 39 39 H 1.08007 * 120.26759 * 359.97438 * 14 13 12 40 40 H 1.07997 * 120.65263 * 180.02562 * 15 14 13 41 41 H 1.07992 * 120.40227 * 180.24228 * 16 15 14 42 42 H 0.96997 * 119.99873 * 354.51493 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 8 4.0464 2.7897 -0.0141 6 6 5.3881 2.9704 0.0969 7 6 6.2374 1.8754 0.1224 8 6 7.6014 2.0593 0.2412 9 6 8.1297 3.3379 0.3300 10 9 9.4648 3.5083 0.4464 11 6 7.2949 4.4382 0.3010 12 6 5.9172 4.2624 0.1814 13 6 5.0167 5.4388 0.1503 14 6 5.5489 6.7219 0.3226 15 6 4.7035 7.8205 0.2924 16 6 3.3516 7.6129 0.0861 17 6 2.8760 6.2988 -0.0753 18 6 1.4960 6.0724 -0.2818 19 1 0.7721 6.7929 0.0693 20 6 1.0677 4.9142 -0.9415 21 7 1.8920 4.2619 -1.7191 22 14 -0.6794 4.2965 -0.7049 23 1 -0.7222 3.3629 0.4491 24 1 -1.5804 5.4477 -0.4441 25 1 -1.1243 3.5878 -1.9318 26 7 3.7196 5.2642 -0.0403 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9198 -0.8857 35 1 3.9338 0.9374 0.8941 36 1 5.8317 0.8767 0.0543 37 1 8.2592 1.2030 0.2652 38 1 7.7092 5.4332 0.3700 39 1 6.6094 6.8551 0.4777 40 1 5.0936 8.8191 0.4227 41 1 2.6690 8.4490 0.0536 42 1 2.7737 4.6223 -1.9021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243235182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:37 Heat of formation + Delta-G solvation = -56.940178 kcal Electronic energy + Delta-G solvation = -26471.002217 eV Core-core repulsion = 22715.464559 eV Total energy + Delta-G solvation = -3755.537658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.79733 -41.23884 -39.92066 -38.26894 -35.86359 -35.62741 -33.55741 -32.37604 -30.94441 -30.63893 -29.35460 -27.21704 -25.36751 -24.65091 -23.46350 -22.45837 -22.32860 -21.71295 -19.84841 -18.97302 -18.24829 -17.55407 -17.16920 -16.69561 -16.50431 -16.32759 -16.23864 -15.65231 -15.54825 -15.48209 -15.01697 -14.68764 -14.31854 -14.28565 -14.08434 -13.73860 -13.56631 -13.53264 -13.32011 -12.87252 -12.82072 -12.54869 -12.38593 -12.12663 -12.02288 -11.88990 -11.68719 -11.60483 -11.48046 -11.27772 -10.89528 -10.63676 -10.09644 -9.72813 -9.47993 -8.93314 -8.67217 -6.47020 -0.22478 0.25542 0.96842 1.13288 1.51167 1.63936 1.76557 2.37580 2.42054 2.55769 2.95007 3.19532 3.56066 3.71016 3.80059 3.96679 4.03400 4.07745 4.14800 4.27285 4.28890 4.37664 4.41380 4.53246 4.62390 4.68944 4.73390 4.78424 4.86329 4.94734 5.00062 5.04957 5.09346 5.11973 5.29117 5.30474 5.35636 5.41938 5.59025 5.60160 5.74352 5.79134 5.87974 5.96209 6.18870 6.70782 6.79633 6.95305 7.95097 8.25524 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.006177 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.286508 B = 4532.020110 C = 6888.285022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.122 4.122 4 C 0.054 3.946 5 O -0.274 6.274 6 C 0.138 3.862 7 C -0.190 4.190 8 C -0.093 4.093 9 C 0.040 3.960 10 F -0.143 7.143 11 C -0.099 4.099 12 C -0.075 4.075 13 C 0.172 3.828 14 C -0.305 4.305 15 C -0.051 4.051 16 C -0.300 4.300 17 C 0.222 3.778 18 C -0.534 4.534 19 H 0.071 0.929 20 C 0.017 3.983 21 N -0.752 5.752 22 Si 1.097 2.903 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.265 1.265 26 N -0.519 5.519 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -10.427 2.516 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.160 4.160 4 C -0.022 4.022 5 O -0.185 6.185 6 C 0.089 3.911 7 C -0.208 4.208 8 C -0.112 4.112 9 C 0.021 3.979 10 F -0.122 7.122 11 C -0.119 4.119 12 C -0.077 4.077 13 C 0.028 3.972 14 C -0.327 4.327 15 C -0.075 4.075 16 C -0.322 4.322 17 C 0.097 3.903 18 C -0.565 4.565 19 H 0.089 0.911 20 C -0.207 4.207 21 N -0.372 5.372 22 Si 0.916 3.084 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.189 1.189 26 N -0.233 5.233 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.182 0.818 37 H 0.189 0.811 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.122 0.878 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.887 -12.310 1.936 12.791 hybrid contribution 1.689 2.806 0.560 3.323 sum 4.576 -9.504 2.496 10.839 Atomic orbital electron populations 1.21790 0.95422 1.02475 1.01478 1.21392 0.96388 0.93932 1.02990 1.21610 0.92920 0.98499 1.02948 1.23001 0.95945 0.81925 1.01283 1.86722 1.17513 1.28840 1.85384 1.19557 0.84595 0.93381 0.93538 1.21313 0.93133 0.98697 1.07693 1.21241 0.95365 0.96166 0.98448 1.17352 0.77211 0.94267 1.09104 1.91459 1.30141 1.96393 1.94212 1.21046 0.90905 0.99797 1.00137 1.18083 0.92114 0.90378 1.07107 1.19923 0.90988 0.91581 0.94706 1.21549 1.00178 0.92667 1.18353 1.21224 0.92888 0.98699 0.94673 1.22008 0.96221 0.97338 1.16672 1.18967 0.93923 0.87905 0.89487 1.20608 0.91067 1.08668 1.36171 0.91089 1.27859 1.08768 0.92632 0.91410 1.70187 1.08792 1.36142 1.22121 0.83296 0.69580 0.77131 0.78403 1.18587 1.19520 1.18939 1.68454 1.02064 1.33138 1.19669 0.93562 0.90376 0.93416 0.90719 0.90562 0.93946 0.91004 0.91410 0.91157 0.81836 0.81137 0.83322 0.85248 0.84697 0.87844 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.11 -2.65 5.93 30.59 0.18 -2.47 16 3 C -0.12 -4.15 5.58 30.59 0.17 -3.98 16 4 C 0.05 1.73 4.75 71.98 0.34 2.07 16 5 O -0.27 -11.67 7.97 -91.72 -0.73 -12.40 16 6 C 0.14 5.34 6.68 22.75 0.15 5.49 16 7 C -0.19 -5.42 9.02 22.33 0.20 -5.22 16 8 C -0.09 -2.37 10.01 22.34 0.22 -2.15 16 9 C 0.04 1.18 7.29 22.34 0.16 1.34 16 10 F -0.14 -4.03 17.26 44.97 0.78 -3.26 16 11 C -0.10 -3.39 9.39 22.53 0.21 -3.17 16 12 C -0.08 -3.11 5.89 -19.96 -0.12 -3.23 16 13 C 0.17 8.36 6.73 42.14 0.28 8.64 16 14 C -0.30 -13.49 9.47 22.79 0.22 -13.27 16 15 C -0.05 -2.26 10.15 22.39 0.23 -2.04 16 16 C -0.30 -15.23 9.83 22.89 0.23 -15.01 16 17 C 0.22 12.44 6.01 40.25 0.24 12.68 16 18 C -0.53 -29.63 9.05 23.47 0.21 -29.41 16 19 H 0.07 3.84 7.93 -2.91 -0.02 3.82 16 20 C 0.02 0.88 5.27 85.28 0.45 1.33 16 21 N -0.75 -39.95 11.92 21.83 0.26 -39.69 16 22 Si 1.10 43.76 29.98 68.60 2.06 45.82 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 26 N -0.52 -28.18 5.82 -178.25 -1.04 -29.22 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.90 6.89 -2.38 -0.02 2.88 16 34 H 0.07 1.93 7.78 -2.39 -0.02 1.91 16 35 H 0.07 1.89 7.55 -2.39 -0.02 1.87 16 36 H 0.16 3.61 6.32 -2.91 -0.02 3.59 16 37 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.15 4.66 6.19 -2.91 -0.02 4.64 16 39 H 0.13 4.80 6.19 -2.91 -0.02 4.78 16 40 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 42 H 0.28 16.50 6.71 -92.71 -0.62 15.87 16 Total: -1.00 -64.06 353.82 6.60 -57.45 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 1.18 Total: 32.62 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 4.10 Total: -51.33 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.78 Total: -68.90 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.73 Total: -12.40 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.06 Total: 45.82 kcal Total: -64.06 6.60 -57.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243235182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.512 kcal (2) G-P(sol) polarization free energy of solvation -64.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds