Wall clock time and date at job start Tue Mar 31 2020 11:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47344 * 2 1 4 4 C 1.52996 * 109.47090 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.35861 * 117.00148 * 179.97438 * 5 4 3 7 7 C 1.38584 * 120.09632 * 0.25460 * 6 5 4 8 8 C 1.38162 * 120.09253 * 180.30220 * 7 6 5 9 9 C 1.38599 * 120.28620 * 359.72025 * 8 7 6 10 10 F 1.35100 * 119.90314 * 179.97438 * 9 8 7 11 11 C 1.38165 * 120.19201 * 359.97438 * 9 8 7 12 12 C 1.39358 * 119.90795 * 0.02562 * 11 9 8 13 13 C 1.48256 * 120.14261 * 179.97438 * 12 11 9 14 14 C 1.38973 * 119.62107 * 0.02562 * 13 12 11 15 15 C 1.40820 * 118.76083 * 179.97438 * 14 13 12 16 16 C 1.41525 * 120.98125 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00736 * 336.09578 * 16 15 14 18 18 C 1.40051 * 119.99569 * 156.09189 * 16 15 14 19 19 N 1.30739 * 119.99956 * 343.15689 * 18 16 15 20 20 Si 1.86797 * 119.99848 * 163.15406 * 18 16 15 21 21 H 1.48498 * 109.47458 * 90.00172 * 20 18 16 22 22 H 1.48508 * 109.47128 * 210.00347 * 20 18 16 23 23 H 1.48503 * 109.47092 * 330.00140 * 20 18 16 24 24 C 1.41153 * 118.02965 * 0.02562 * 15 14 13 25 25 C 1.37715 * 119.08760 * 359.97438 * 24 15 14 26 26 N 1.31937 * 121.16506 * 0.02562 * 25 24 15 27 27 H 1.08996 * 109.47442 * 59.99346 * 1 2 3 28 28 H 1.09001 * 109.47589 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46781 * 299.99698 * 1 2 3 30 30 H 1.09006 * 109.46781 * 240.00302 * 2 1 3 31 31 H 1.08996 * 109.47442 * 120.00654 * 2 1 3 32 32 H 1.08999 * 109.47217 * 60.00117 * 3 2 1 33 33 H 1.09003 * 109.46882 * 300.00267 * 3 2 1 34 34 H 1.08999 * 109.47397 * 59.99735 * 4 3 2 35 35 H 1.09003 * 109.47074 * 299.99657 * 4 3 2 36 36 H 1.08009 * 119.95961 * 359.97438 * 7 6 5 37 37 H 1.08001 * 119.85718 * 179.70012 * 8 7 6 38 38 H 1.08003 * 120.04426 * 180.02562 * 11 9 8 39 39 H 1.08007 * 120.61716 * 359.97305 * 14 13 12 40 40 H 0.97004 * 119.99667 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.45583 * 180.02562 * 24 15 14 42 42 H 1.07998 * 119.41805 * 179.72192 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3933 2.9677 -0.0013 7 6 6.2393 1.8700 -0.0062 8 6 7.6090 2.0511 0.0001 9 6 8.1451 3.3292 0.0053 10 9 9.4856 3.4973 0.0119 11 6 7.3126 4.4319 0.0038 12 6 5.9298 4.2586 -0.0024 13 6 5.0317 5.4381 -0.0035 14 6 5.5767 6.7165 0.0013 15 6 4.7069 7.8239 -0.0003 16 6 5.2111 9.1463 0.0038 17 1 6.2009 9.3458 0.3870 18 6 4.4264 10.1964 -0.4892 19 7 3.3893 9.9395 -1.2426 20 14 4.8616 11.9640 -0.0701 21 1 5.7872 12.5031 -1.0986 22 1 3.6241 12.7844 -0.0391 23 1 5.5193 12.0097 1.2605 24 6 3.3173 7.5760 -0.0062 25 6 2.8697 6.2736 -0.0106 26 7 3.7154 5.2609 -0.0089 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 5.8274 0.8716 -0.0095 37 1 8.2648 1.1930 0.0012 38 1 7.7329 5.4268 0.0075 39 1 6.6475 6.8579 0.0062 40 1 2.8455 10.6668 -1.5837 41 1 2.6149 8.3963 -0.0081 42 1 1.8076 6.0778 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243235546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:41 Heat of formation + Delta-G solvation = -59.600974 kcal Electronic energy + Delta-G solvation = -25171.864412 eV Core-core repulsion = 21416.211374 eV Total energy + Delta-G solvation = -3755.653039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.79041 -41.24861 -39.90043 -38.26449 -36.03457 -35.86473 -33.47508 -32.65217 -30.99804 -30.31947 -29.22400 -27.86349 -25.39493 -24.56298 -23.54577 -22.51190 -22.29688 -21.75305 -19.64419 -18.79116 -18.06941 -17.65891 -17.21869 -17.11477 -16.50439 -16.35087 -16.08851 -15.85945 -15.55398 -15.51224 -15.02190 -14.48238 -14.39881 -14.33052 -14.19235 -13.95157 -13.60717 -13.58481 -13.18977 -12.95776 -12.88281 -12.72604 -12.61950 -12.14820 -12.00216 -11.94456 -11.83186 -11.68561 -11.59891 -11.34312 -11.25329 -10.54906 -9.98081 -9.77204 -9.43873 -8.75104 -8.62110 -6.57362 -0.19191 0.25205 0.92434 1.13849 1.37484 1.50379 1.57411 2.17170 2.34913 2.54261 2.86055 3.20202 3.56426 3.73254 3.77387 3.94572 3.99594 4.08732 4.12850 4.22791 4.30067 4.40807 4.43155 4.59289 4.65408 4.71467 4.86314 4.87960 4.91573 4.96608 4.97410 5.08692 5.11143 5.12477 5.21069 5.27988 5.34444 5.37301 5.44616 5.48239 5.55922 5.77644 5.89560 6.17885 6.49783 6.63552 6.78643 6.79458 7.72190 8.23657 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.003922 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.509766 B = 7137.364009 C = 9681.733627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.113 4.113 4 C 0.043 3.957 5 O -0.288 6.288 6 C 0.141 3.859 7 C -0.182 4.182 8 C -0.096 4.096 9 C 0.043 3.957 10 F -0.145 7.145 11 C -0.111 4.111 12 C -0.065 4.065 13 C 0.153 3.847 14 C -0.276 4.276 15 C 0.099 3.901 16 C -0.491 4.491 17 H 0.081 0.919 18 C 0.039 3.961 19 N -0.815 5.815 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.263 1.263 23 H -0.258 1.258 24 C -0.231 4.231 25 C 0.083 3.917 26 N -0.536 5.536 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.293 0.707 41 H 0.115 0.885 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -16.691 1.842 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.151 4.151 4 C -0.032 4.032 5 O -0.200 6.200 6 C 0.093 3.907 7 C -0.200 4.200 8 C -0.115 4.115 9 C 0.024 3.976 10 F -0.124 7.124 11 C -0.131 4.131 12 C -0.066 4.066 13 C 0.019 3.981 14 C -0.299 4.299 15 C 0.092 3.908 16 C -0.522 4.522 17 H 0.099 0.901 18 C -0.178 4.178 19 N -0.440 5.440 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.182 1.182 24 C -0.254 4.254 25 C -0.070 4.070 26 N -0.250 5.250 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.190 0.810 37 H 0.191 0.809 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.133 0.867 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.288 -17.308 1.696 17.393 hybrid contribution 0.613 2.128 -0.043 2.215 sum 0.325 -15.180 1.653 15.273 Atomic orbital electron populations 1.21766 0.95221 1.02323 1.01754 1.21404 0.96402 0.94067 1.03158 1.21502 0.92391 0.98626 1.02590 1.23164 0.96055 0.81738 1.02263 1.86558 1.17329 1.29359 1.86707 1.19260 0.84155 0.92779 0.94486 1.21346 0.92790 0.98801 1.07082 1.21260 0.95661 0.95777 0.98772 1.17424 0.76886 0.94373 1.08955 1.91459 1.29844 1.96469 1.94653 1.21054 0.91566 0.99580 1.00863 1.17992 0.91629 0.90550 1.06479 1.19392 0.90522 0.90811 0.97376 1.22036 0.99189 0.92758 1.15920 1.18113 0.92200 0.93580 0.86925 1.19859 1.02711 0.91800 1.37785 0.90083 1.26847 0.93400 1.06136 0.91445 1.69814 1.14662 1.37021 1.22553 0.85130 0.79143 0.75066 0.79956 1.18529 1.18715 1.18205 1.22255 0.96535 0.97039 1.09546 1.22368 0.98717 0.88746 0.97189 1.67592 1.02202 1.34413 1.20760 0.93103 0.91235 0.93029 0.90760 0.90668 0.92274 0.92423 0.90772 0.90635 0.80956 0.80914 0.84584 0.87135 0.89649 0.86688 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.11 -1.70 5.93 30.59 0.18 -1.52 16 3 C -0.11 -2.50 5.58 30.59 0.17 -2.33 16 4 C 0.04 0.98 4.74 71.98 0.34 1.32 16 5 O -0.29 -10.02 7.96 -91.99 -0.73 -10.75 16 6 C 0.14 4.84 6.69 22.73 0.15 4.99 16 7 C -0.18 -4.46 9.03 22.33 0.20 -4.26 16 8 C -0.10 -2.26 10.01 22.34 0.22 -2.03 16 9 C 0.04 1.29 7.29 22.34 0.16 1.45 16 10 F -0.15 -4.29 17.26 44.97 0.78 -3.52 16 11 C -0.11 -3.99 9.39 22.52 0.21 -3.78 16 12 C -0.06 -2.63 5.89 -19.97 -0.12 -2.75 16 13 C 0.15 7.49 6.73 41.84 0.28 7.78 16 14 C -0.28 -14.28 9.25 23.08 0.21 -14.07 16 15 C 0.10 5.52 5.60 -21.12 -0.12 5.40 16 16 C -0.49 -26.53 9.12 23.52 0.21 -26.31 16 17 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 18 C 0.04 1.93 5.20 85.30 0.44 2.37 16 19 N -0.82 -42.02 10.92 21.84 0.24 -41.78 16 20 Si 0.99 37.46 29.59 68.60 2.03 39.49 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 C -0.23 -12.47 8.79 22.86 0.20 -12.27 16 25 C 0.08 4.10 11.15 84.55 0.94 5.04 16 26 N -0.54 -26.54 8.10 -185.41 -1.50 -28.04 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.40 7.65 -2.39 -0.02 1.38 16 35 H 0.08 1.41 7.67 -2.39 -0.02 1.39 16 36 H 0.17 2.83 6.30 -2.91 -0.02 2.81 16 37 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.14 4.97 6.18 -2.91 -0.02 4.95 16 39 H 0.11 5.32 6.18 -2.91 -0.02 5.30 16 40 H 0.29 13.49 8.29 -92.71 -0.77 12.72 16 41 H 0.12 6.30 6.20 -2.91 -0.02 6.29 16 42 H 0.14 6.23 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -64.85 354.93 6.27 -58.58 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 1.04 Total: 28.53 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 4.42 Total: -42.51 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.26 Total: -69.82 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.73 Total: -10.75 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -64.85 6.27 -58.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243235546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.020 kcal (2) G-P(sol) polarization free energy of solvation -64.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds