Wall clock time and date at job start Tue Mar 31 2020 11:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 C 1.52995 * 109.47230 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.35803 * 117.00048 * 180.02562 * 5 4 3 7 7 C 1.38560 * 120.11726 * 0.24861 * 6 5 4 8 8 C 1.38172 * 120.11451 * 180.26013 * 7 6 5 9 9 C 1.38714 * 120.34294 * 359.74584 * 8 7 6 10 10 F 1.35098 * 119.88473 * 179.97438 * 9 8 7 11 11 C 1.38043 * 120.23175 * 359.97438 * 9 8 7 12 12 C 1.39643 * 119.88282 * 0.02562 * 11 9 8 13 13 C 1.47801 * 120.16902 * 179.97438 * 12 11 9 14 14 C 1.39981 * 119.45905 * 359.97438 * 13 12 11 15 15 C 1.36550 * 119.46532 * 180.02562 * 14 13 12 16 16 C 1.41333 * 118.42262 * 0.25267 * 15 14 13 17 17 C 1.41021 * 120.54571 * 179.72995 * 16 15 14 18 18 H 1.07997 * 119.99611 * 203.71650 * 17 16 15 19 19 C 1.39995 * 120.00231 * 23.71909 * 17 16 15 20 20 N 1.30814 * 120.00060 * 17.63483 * 19 17 16 21 21 Si 1.86795 * 120.00101 * 197.63625 * 19 17 16 22 22 H 1.48503 * 109.47129 * 60.00074 * 21 19 17 23 23 H 1.48504 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47402 * 300.00109 * 21 19 17 25 25 C 1.40953 * 118.90171 * 359.50398 * 16 15 14 26 26 N 1.31251 * 120.40779 * 0.50486 * 25 16 15 27 27 H 1.08998 * 109.47088 * 300.00291 * 1 2 3 28 28 H 1.09002 * 109.46786 * 60.00206 * 1 2 3 29 29 H 1.08998 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47382 * 240.00144 * 2 1 3 31 31 H 1.08999 * 109.47079 * 119.99359 * 2 1 3 32 32 H 1.09005 * 109.47339 * 59.99487 * 3 2 1 33 33 H 1.08999 * 109.46645 * 299.99624 * 3 2 1 34 34 H 1.09005 * 109.47313 * 59.99551 * 4 3 2 35 35 H 1.09002 * 109.46771 * 299.99882 * 4 3 2 36 36 H 1.08005 * 119.94456 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.82869 * 179.71854 * 8 7 6 38 38 H 1.07999 * 120.05835 * 180.02562 * 11 9 8 39 39 H 1.08001 * 120.26775 * 0.02562 * 14 13 12 40 40 H 1.08005 * 120.78762 * 179.97438 * 15 14 13 41 41 H 0.97000 * 120.00037 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.79111 * 180.22554 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3926 2.9678 0.0000 7 6 6.2389 1.8707 -0.0047 8 6 7.6087 2.0518 0.0006 9 6 8.1465 3.3304 0.0054 10 9 9.4872 3.4968 0.0111 11 6 7.3166 4.4335 0.0043 12 6 5.9308 4.2615 -0.0011 13 6 5.0363 5.4381 -0.0017 14 6 5.5900 6.7238 0.0037 15 6 4.7637 7.8109 0.0037 16 6 3.3670 7.5944 0.0037 17 6 2.4727 8.6847 0.0094 18 1 1.4685 8.5573 0.3857 19 6 2.8866 9.9321 -0.4728 20 7 3.9480 10.0205 -1.2323 21 14 1.9234 11.4705 -0.0315 22 1 1.9125 11.6417 1.4436 23 1 2.5633 12.6532 -0.6618 24 1 0.5288 11.3400 -0.5249 25 6 2.8829 6.2707 -0.0071 26 7 3.7178 5.2579 -0.0068 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 5.8272 0.8722 -0.0079 37 1 8.2641 1.1934 0.0015 38 1 7.7383 5.4277 0.0076 39 1 6.6620 6.8549 0.0079 40 1 5.1678 8.8125 0.0083 41 1 4.2346 10.8847 -1.5667 42 1 1.8184 6.0886 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243236782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:50 Heat of formation + Delta-G solvation = -48.778841 kcal Electronic energy + Delta-G solvation = -25155.071907 eV Core-core repulsion = 21399.888152 eV Total energy + Delta-G solvation = -3755.183756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.46896 -39.76240 -38.21944 -36.89094 -34.94336 -34.31891 -31.83749 -30.77430 -29.76882 -29.32839 -28.25821 -25.60045 -24.14466 -22.82332 -22.21558 -21.18102 -20.85938 -20.43982 -17.72927 -17.53201 -16.94932 -16.25931 -16.13555 -15.47528 -15.20197 -14.86115 -14.55245 -14.50174 -14.24960 -14.13876 -13.74760 -13.31217 -12.88733 -12.80761 -12.59912 -12.48704 -12.28804 -11.86872 -11.79754 -11.67496 -11.52065 -11.30967 -11.23856 -11.14109 -11.00347 -10.79171 -10.74996 -10.36918 -10.26494 -9.94758 -9.56880 -8.92300 -8.33126 -8.00335 -7.90645 -7.21501 -6.98071 -4.57301 1.32942 1.65958 2.61994 2.91778 2.93766 2.97470 3.14554 3.58943 3.71015 4.01138 4.55937 4.63805 4.87324 4.90689 5.00872 5.05466 5.08845 5.23882 5.35383 5.43543 5.54076 5.63670 5.65634 5.70572 5.75875 5.79883 5.95679 6.05080 6.10374 6.20026 6.21904 6.33491 6.34892 6.49030 6.52426 6.64540 6.77837 6.90181 6.96877 7.15535 7.19367 7.61567 7.74225 7.85189 7.97940 8.29280 8.48144 8.59559 9.61091 9.84198 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.004085 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.331016 B = 6852.621078 C = 9701.978389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.052 3.948 5 O -0.260 6.260 6 C 0.124 3.876 7 C -0.187 4.187 8 C -0.145 4.145 9 C 0.061 3.939 10 F -0.150 7.150 11 C -0.137 4.137 12 C 0.019 3.981 13 C -0.011 4.011 14 C -0.120 4.120 15 C -0.147 4.147 16 C 0.070 3.930 17 C -0.431 4.431 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.774 5.774 21 Si 0.916 3.084 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.018 4.018 26 N -0.416 5.416 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.288 0.712 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -12.011 1.615 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.153 4.153 4 C -0.024 4.024 5 O -0.171 6.171 6 C 0.077 3.923 7 C -0.206 4.206 8 C -0.164 4.164 9 C 0.042 3.958 10 F -0.129 7.129 11 C -0.157 4.157 12 C 0.018 3.982 13 C -0.144 4.144 14 C -0.140 4.140 15 C -0.172 4.172 16 C 0.065 3.935 17 C -0.459 4.459 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.397 5.397 21 Si 0.740 3.260 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.185 4.185 26 N -0.123 5.123 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.477 -12.528 1.458 12.622 hybrid contribution 0.433 1.454 0.042 1.518 sum -0.044 -11.074 1.500 11.175 Atomic orbital electron populations 1.21746 0.95431 1.01417 1.02268 1.21436 0.96251 0.96195 1.01907 1.21496 0.92823 0.96807 1.04222 1.22788 0.95583 0.83773 1.00246 1.86541 1.17373 1.25910 1.87254 1.19082 0.83271 0.92744 0.97193 1.20901 0.93146 0.98019 1.08563 1.20661 0.95173 0.95387 1.05180 1.17338 0.76743 0.94089 1.07668 1.91433 1.30367 1.96461 1.94608 1.20930 0.91898 0.98424 1.04434 1.17913 0.91036 0.90284 0.99003 1.18502 0.89632 0.89562 1.16734 1.21301 0.98671 0.93326 1.00715 1.21290 0.93295 0.98049 1.04540 1.18659 0.93111 0.93488 0.88203 1.19675 0.99647 0.93076 1.33523 0.89480 1.26103 0.95031 1.01385 0.92409 1.69788 1.21129 1.27875 1.20864 0.86217 0.80425 0.79144 0.80259 1.18459 1.20032 1.18572 1.22483 0.97465 0.88045 1.10487 1.67085 1.02525 1.35507 1.07135 0.92514 0.92490 0.92853 0.92013 0.92029 0.90684 0.90643 0.92942 0.92952 0.85332 0.85570 0.84355 0.88196 0.85580 0.90083 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.42 5.58 -26.73 -0.15 -1.57 16 4 C 0.05 0.71 4.74 37.16 0.18 0.88 16 5 O -0.26 -4.83 7.94 -19.12 -0.15 -4.99 16 6 C 0.12 2.32 6.70 -38.76 -0.26 2.06 16 7 C -0.19 -2.86 9.03 -39.49 -0.36 -3.22 16 8 C -0.14 -2.16 10.01 -39.43 -0.39 -2.56 16 9 C 0.06 1.02 7.29 -39.48 -0.29 0.73 16 10 F -0.15 -2.45 17.26 2.25 0.04 -2.41 16 11 C -0.14 -2.51 9.39 -39.13 -0.37 -2.87 16 12 C 0.02 0.40 5.89 -104.75 -0.62 -0.22 16 13 C -0.01 -0.26 6.74 -82.76 -0.56 -0.82 16 14 C -0.12 -2.79 9.38 -39.54 -0.37 -3.16 16 15 C -0.15 -3.67 8.74 -39.01 -0.34 -4.01 16 16 C 0.07 1.79 5.59 -106.64 -0.60 1.19 16 17 C -0.43 -10.54 9.06 -37.87 -0.34 -10.89 16 18 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.66 5.17 -17.33 -0.09 1.57 16 20 N -0.77 -18.53 10.92 55.55 0.61 -17.92 16 21 Si 0.92 17.10 29.59 -169.99 -5.03 12.07 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 23 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 C -0.02 -0.45 10.97 -16.77 -0.18 -0.64 16 26 N -0.42 -10.12 8.10 -9.12 -0.07 -10.19 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 35 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 36 H 0.13 1.58 6.29 -52.48 -0.33 1.25 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.14 2.40 6.15 -52.49 -0.32 2.07 16 39 H 0.10 2.05 6.15 -52.49 -0.32 1.72 16 40 H 0.13 3.17 6.19 -52.48 -0.32 2.85 16 41 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 42 H 0.13 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -27.17 354.69 -9.25 -36.41 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.45 Total: 7.41 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -4.53 Total: -25.73 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 0.53 Total: -28.11 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.15 Total: -4.99 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.17 -9.25 -36.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243236782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.367 kcal (2) G-P(sol) polarization free energy of solvation -27.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds