Wall clock time and date at job start Tue Mar 31 2020 11:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 C 1.52995 * 109.47230 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.35803 * 117.00048 * 180.02562 * 5 4 3 7 7 C 1.38560 * 120.11726 * 0.24861 * 6 5 4 8 8 C 1.38172 * 120.11451 * 180.26013 * 7 6 5 9 9 C 1.38714 * 120.34294 * 359.74584 * 8 7 6 10 10 F 1.35098 * 119.88473 * 179.97438 * 9 8 7 11 11 C 1.38043 * 120.23175 * 359.97438 * 9 8 7 12 12 C 1.39643 * 119.88282 * 0.02562 * 11 9 8 13 13 C 1.47801 * 120.16902 * 179.97438 * 12 11 9 14 14 C 1.39981 * 119.45905 * 359.97438 * 13 12 11 15 15 C 1.36550 * 119.46532 * 180.02562 * 14 13 12 16 16 C 1.41333 * 118.42262 * 0.25267 * 15 14 13 17 17 C 1.41021 * 120.54571 * 179.72995 * 16 15 14 18 18 H 1.07997 * 119.99611 * 203.71650 * 17 16 15 19 19 C 1.39995 * 120.00231 * 23.71909 * 17 16 15 20 20 N 1.30814 * 120.00060 * 17.63483 * 19 17 16 21 21 Si 1.86795 * 120.00101 * 197.63625 * 19 17 16 22 22 H 1.48503 * 109.47129 * 60.00074 * 21 19 17 23 23 H 1.48504 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47402 * 300.00109 * 21 19 17 25 25 C 1.40953 * 118.90171 * 359.50398 * 16 15 14 26 26 N 1.31251 * 120.40779 * 0.50486 * 25 16 15 27 27 H 1.08998 * 109.47088 * 300.00291 * 1 2 3 28 28 H 1.09002 * 109.46786 * 60.00206 * 1 2 3 29 29 H 1.08998 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47382 * 240.00144 * 2 1 3 31 31 H 1.08999 * 109.47079 * 119.99359 * 2 1 3 32 32 H 1.09005 * 109.47339 * 59.99487 * 3 2 1 33 33 H 1.08999 * 109.46645 * 299.99624 * 3 2 1 34 34 H 1.09005 * 109.47313 * 59.99551 * 4 3 2 35 35 H 1.09002 * 109.46771 * 299.99882 * 4 3 2 36 36 H 1.08005 * 119.94456 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.82869 * 179.71854 * 8 7 6 38 38 H 1.07999 * 120.05835 * 180.02562 * 11 9 8 39 39 H 1.08001 * 120.26775 * 0.02562 * 14 13 12 40 40 H 1.08005 * 120.78762 * 179.97438 * 15 14 13 41 41 H 0.97000 * 120.00037 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.79111 * 180.22554 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3926 2.9678 0.0000 7 6 6.2389 1.8707 -0.0047 8 6 7.6087 2.0518 0.0006 9 6 8.1465 3.3304 0.0054 10 9 9.4872 3.4968 0.0111 11 6 7.3166 4.4335 0.0043 12 6 5.9308 4.2615 -0.0011 13 6 5.0363 5.4381 -0.0017 14 6 5.5900 6.7238 0.0037 15 6 4.7637 7.8109 0.0037 16 6 3.3670 7.5944 0.0037 17 6 2.4727 8.6847 0.0094 18 1 1.4685 8.5573 0.3857 19 6 2.8866 9.9321 -0.4728 20 7 3.9480 10.0205 -1.2323 21 14 1.9234 11.4705 -0.0315 22 1 1.9125 11.6417 1.4436 23 1 2.5633 12.6532 -0.6618 24 1 0.5288 11.3400 -0.5249 25 6 2.8829 6.2707 -0.0071 26 7 3.7178 5.2579 -0.0068 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 5.8272 0.8722 -0.0079 37 1 8.2641 1.1934 0.0015 38 1 7.7383 5.4277 0.0076 39 1 6.6620 6.8549 0.0079 40 1 5.1678 8.8125 0.0083 41 1 4.2346 10.8847 -1.5667 42 1 1.8184 6.0886 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243236782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:50 Heat of formation + Delta-G solvation = -60.207806 kcal Electronic energy + Delta-G solvation = -25155.567505 eV Core-core repulsion = 21399.888152 eV Total energy + Delta-G solvation = -3755.679353 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.76458 -41.16610 -39.92785 -38.20251 -36.07639 -35.86305 -33.39017 -32.59092 -30.95503 -30.87372 -29.49950 -27.30807 -25.25974 -24.39578 -23.69110 -22.43132 -22.33405 -21.73466 -19.35062 -19.05099 -18.33090 -17.68805 -17.20014 -17.12453 -16.47305 -16.45042 -16.15081 -15.69161 -15.53696 -15.47703 -15.01815 -14.47176 -14.40413 -14.27230 -13.94213 -13.69548 -13.59862 -13.50506 -13.37820 -13.13176 -12.87742 -12.79010 -12.59383 -12.26633 -12.09065 -11.94816 -11.75601 -11.67566 -11.59104 -11.33950 -11.25917 -10.43844 -10.20920 -9.83125 -9.44161 -8.84795 -8.65290 -6.42731 -0.10554 0.31379 0.93899 1.14701 1.38310 1.50507 1.56708 2.14884 2.40798 2.51631 2.87493 3.29497 3.67329 3.76993 3.78624 3.98233 3.98896 4.12930 4.18928 4.23942 4.32262 4.40391 4.43272 4.62201 4.66269 4.71043 4.76941 4.87003 4.91068 4.96351 4.99976 5.07647 5.09916 5.17632 5.20226 5.26123 5.31415 5.36623 5.43649 5.48112 5.76154 5.84400 5.92963 5.99688 6.44219 6.66145 6.70112 6.75388 7.75017 8.14344 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.004085 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.331016 B = 6852.621078 C = 9701.978389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.114 4.114 4 C 0.045 3.955 5 O -0.293 6.293 6 C 0.118 3.882 7 C -0.176 4.176 8 C -0.118 4.118 9 C 0.050 3.950 10 F -0.147 7.147 11 C -0.134 4.134 12 C -0.027 4.027 13 C -0.012 4.012 14 C -0.129 4.129 15 C -0.164 4.164 16 C 0.044 3.956 17 C -0.464 4.464 18 H 0.091 0.909 19 C 0.035 3.965 20 N -0.807 5.807 21 Si 0.991 3.009 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.255 1.255 25 C -0.040 4.040 26 N -0.424 5.424 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.296 0.704 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -14.431 1.820 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.151 4.151 4 C -0.030 4.030 5 O -0.205 6.205 6 C 0.070 3.930 7 C -0.195 4.195 8 C -0.137 4.137 9 C 0.031 3.969 10 F -0.126 7.126 11 C -0.154 4.154 12 C -0.029 4.029 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.189 4.189 16 C 0.039 3.961 17 C -0.492 4.492 18 H 0.109 0.891 19 C -0.183 4.183 20 N -0.431 5.431 21 Si 0.810 3.190 22 H -0.182 1.182 23 H -0.190 1.190 24 H -0.179 1.179 25 C -0.204 4.204 26 N -0.132 5.132 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.318 -14.969 1.660 15.064 hybrid contribution 0.346 1.922 -0.034 1.953 sum 0.663 -13.048 1.626 13.165 Atomic orbital electron populations 1.21766 0.95159 1.02353 1.01758 1.21404 0.96449 0.94000 1.03139 1.21506 0.92451 0.98669 1.02505 1.23109 0.95973 0.81927 1.02019 1.86504 1.17635 1.29128 1.87186 1.19302 0.83935 0.92998 0.96737 1.21266 0.92866 0.98621 1.06738 1.21146 0.95528 0.95750 1.01245 1.17422 0.76750 0.94446 1.08271 1.91445 1.30000 1.96504 1.94631 1.20978 0.91412 0.99348 1.03648 1.17934 0.91473 0.90345 1.03117 1.19077 0.89847 0.90966 1.14814 1.21558 0.99737 0.93137 1.00468 1.21328 0.93650 0.98173 1.05755 1.18937 0.93699 0.94239 0.89209 1.19928 1.00024 0.94118 1.35167 0.89068 1.26965 0.95885 1.03959 0.91502 1.69829 1.22580 1.29082 1.21593 0.85107 0.79006 0.75014 0.79844 1.18243 1.19007 1.17888 1.22672 0.98076 0.88202 1.11479 1.67154 1.03072 1.35303 1.07633 0.93036 0.93110 0.91147 0.90765 0.90677 0.92369 0.92502 0.91021 0.90889 0.81553 0.81540 0.84411 0.86027 0.86440 0.89290 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.72 16 2 C -0.11 -1.85 5.93 30.60 0.18 -1.67 16 3 C -0.11 -2.71 5.58 30.59 0.17 -2.54 16 4 C 0.04 1.12 4.74 71.98 0.34 1.46 16 5 O -0.29 -10.74 7.94 -91.34 -0.73 -11.47 16 6 C 0.12 4.23 6.70 22.80 0.15 4.38 16 7 C -0.18 -4.68 9.03 22.33 0.20 -4.48 16 8 C -0.12 -2.98 10.01 22.37 0.22 -2.76 16 9 C 0.05 1.55 7.29 22.34 0.16 1.71 16 10 F -0.15 -4.40 17.26 44.97 0.78 -3.63 16 11 C -0.13 -4.80 9.39 22.56 0.21 -4.59 16 12 C -0.03 -1.11 5.89 -19.95 -0.12 -1.23 16 13 C -0.01 -0.60 6.74 41.91 0.28 -0.32 16 14 C -0.13 -6.26 9.38 22.30 0.21 -6.05 16 15 C -0.16 -8.63 8.74 22.64 0.20 -8.43 16 16 C 0.04 2.36 5.59 -21.17 -0.12 2.24 16 17 C -0.46 -23.81 9.06 23.38 0.21 -23.59 16 18 H 0.09 4.40 7.91 -2.91 -0.02 4.37 16 19 C 0.03 1.66 5.17 85.27 0.44 2.10 16 20 N -0.81 -39.99 10.92 21.84 0.24 -39.75 16 21 Si 0.99 35.47 29.59 68.60 2.03 37.50 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 23 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 24 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 25 C -0.04 -2.06 10.97 85.44 0.94 -1.12 16 26 N -0.42 -21.56 8.10 -182.76 -1.48 -23.04 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.51 7.65 -2.38 -0.02 1.49 16 35 H 0.07 1.51 7.67 -2.39 -0.02 1.50 16 36 H 0.17 3.14 6.29 -2.91 -0.02 3.12 16 37 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.14 4.78 6.15 -2.91 -0.02 4.76 16 39 H 0.12 5.15 6.15 -2.91 -0.02 5.13 16 40 H 0.12 6.26 6.19 -2.91 -0.02 6.24 16 41 H 0.30 13.13 8.30 -92.71 -0.77 12.36 16 42 H 0.14 6.50 8.06 -2.91 -0.02 6.48 16 Total: -1.00 -61.98 354.69 6.28 -55.70 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 1.04 Total: 31.30 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 4.40 Total: -46.61 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -1.24 Total: -62.80 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.73 Total: -11.47 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -61.98 6.28 -55.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243236782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.510 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds