Wall clock time and date at job start Tue Mar 31 2020 11:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46823 * 2 1 4 4 C 1.53000 * 109.46863 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47107 * 180.02562 * 4 3 2 6 6 C 1.35885 * 117.00106 * 180.02562 * 5 4 3 7 7 C 1.38565 * 120.09392 * 0.02562 * 6 5 4 8 8 C 1.38184 * 120.09036 * 180.02562 * 7 6 5 9 9 C 1.38575 * 120.27318 * 359.97438 * 8 7 6 10 10 F 1.35108 * 119.90212 * 179.72396 * 9 8 7 11 11 C 1.38197 * 120.19198 * 359.97438 * 9 8 7 12 12 C 1.39299 * 119.90271 * 0.02562 * 11 9 8 13 13 C 1.48348 * 120.13289 * 180.02562 * 12 11 9 14 14 C 1.39748 * 120.41447 * 129.97459 * 13 12 11 15 15 N 1.31904 * 121.14660 * 179.97438 * 14 13 12 16 16 C 1.31517 * 122.12718 * 359.97438 * 15 14 13 17 17 C 1.40783 * 120.66730 * 359.97438 * 16 15 14 18 18 C 1.41445 * 120.60011 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00022 * 330.41349 * 18 17 16 20 20 C 1.39925 * 119.99721 * 150.40500 * 18 17 16 21 21 N 1.30833 * 119.99852 * 161.69916 * 20 18 17 22 22 Si 1.86803 * 120.00071 * 341.70208 * 20 18 17 23 23 H 1.48505 * 109.47016 * 95.41585 * 22 20 18 24 24 H 1.48504 * 109.47232 * 215.41053 * 22 20 18 25 25 H 1.48494 * 109.47536 * 335.41621 * 22 20 18 26 26 C 1.39158 * 120.41675 * 309.69260 * 13 12 11 27 27 H 1.08998 * 109.47592 * 300.00033 * 1 2 3 28 28 H 1.08998 * 109.47034 * 60.00331 * 1 2 3 29 29 H 1.09006 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47592 * 239.99967 * 2 1 3 31 31 H 1.09001 * 109.46630 * 119.99987 * 2 1 3 32 32 H 1.09006 * 109.46996 * 59.99963 * 3 2 1 33 33 H 1.09001 * 109.47507 * 299.99449 * 3 2 1 34 34 H 1.08998 * 109.47253 * 60.00150 * 4 3 2 35 35 H 1.08998 * 109.47333 * 299.99876 * 4 3 2 36 36 H 1.08003 * 119.95101 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.86386 * 179.97438 * 8 7 6 38 38 H 1.07993 * 120.04624 * 180.02562 * 11 9 8 39 39 H 1.08005 * 119.42168 * 359.97438 * 14 13 12 40 40 H 1.07997 * 119.66808 * 180.02562 * 16 15 14 41 41 H 0.97011 * 119.99719 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.95153 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 8 4.0462 2.7898 0.0012 6 6 5.3934 2.9679 0.0013 7 6 6.2393 1.8704 0.0003 8 6 7.6092 2.0516 0.0009 9 6 8.1448 3.3296 0.0020 10 9 9.4853 3.4981 0.0083 11 6 7.3118 4.4323 0.0020 12 6 5.9297 4.2586 0.0014 13 6 5.0307 5.4387 0.0008 14 6 3.9866 5.5321 -0.9233 15 7 3.1784 6.5745 -0.9364 16 6 3.3096 7.5719 -0.0893 17 6 4.3328 7.5629 0.8777 18 6 4.4728 8.6366 1.7877 19 1 4.1691 9.6320 1.4993 20 6 5.0048 8.4089 3.0618 21 7 5.4673 9.4099 3.7659 22 14 5.0545 6.6758 3.7571 23 1 6.3858 6.0739 3.4912 24 1 4.8165 6.7233 5.2222 25 1 4.0011 5.8527 3.1108 26 6 5.2131 6.4637 0.9241 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9336 0.9286 -0.8891 35 1 3.9329 0.9289 0.8908 36 1 5.8273 0.8721 -0.0001 37 1 8.2651 1.1936 0.0005 38 1 7.7318 5.4273 0.0024 39 1 3.8388 4.7369 -1.6391 40 1 2.6249 8.4059 -0.1353 41 1 5.8365 9.2519 4.6491 42 1 6.0082 6.4192 1.6536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243237829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:10 Heat of formation + Delta-G solvation = -67.767453 kcal Electronic energy + Delta-G solvation = -25616.507971 eV Core-core repulsion = 21860.500807 eV Total energy + Delta-G solvation = -3756.007164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.86649 -41.44764 -40.18657 -38.42601 -35.96673 -35.90035 -34.18204 -33.05713 -31.16797 -30.59578 -29.34222 -27.48777 -25.49269 -24.63766 -23.87590 -22.83533 -22.32533 -21.72806 -19.60924 -19.01552 -18.30359 -17.83183 -17.71747 -17.34916 -16.98652 -16.59725 -16.41079 -15.78070 -15.59289 -15.57139 -15.05834 -14.92140 -14.59179 -14.38298 -14.10936 -14.00332 -13.77466 -13.73094 -13.62833 -13.24389 -13.04686 -12.81528 -12.71217 -12.50007 -12.09118 -11.99575 -11.93864 -11.76566 -11.65744 -11.42903 -11.41218 -10.67467 -10.14609 -9.99225 -9.61472 -9.01839 -8.95038 -6.62344 -0.18778 0.13549 0.62518 0.75288 1.17156 1.27393 1.37640 2.00720 2.15200 2.43672 2.57820 3.18510 3.44163 3.52414 3.73708 3.90464 3.94038 4.00724 4.04754 4.09300 4.17670 4.24115 4.37249 4.37459 4.45762 4.56670 4.63627 4.68696 4.74430 4.86356 4.92070 4.94396 4.99938 5.04042 5.04488 5.17466 5.25022 5.28674 5.33366 5.44908 5.53111 5.61032 5.69943 5.85130 6.17872 6.40580 6.47475 6.64684 7.50447 8.05396 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.005185 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.546111 B = 5398.795760 C = 7073.463242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.120 4.120 4 C 0.048 3.952 5 O -0.322 6.322 6 C 0.130 3.870 7 C -0.169 4.169 8 C -0.099 4.099 9 C 0.048 3.952 10 F -0.146 7.146 11 C -0.117 4.117 12 C -0.066 4.066 13 C -0.052 4.052 14 C 0.004 3.996 15 N -0.471 5.471 16 C -0.005 4.005 17 C 0.033 3.967 18 C -0.467 4.467 19 H 0.073 0.927 20 C 0.060 3.940 21 N -0.832 5.832 22 Si 0.948 3.052 23 H -0.260 1.260 24 H -0.267 1.267 25 H -0.262 1.262 26 C -0.202 4.202 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.178 0.822 37 H 0.175 0.825 38 H 0.130 0.870 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.297 0.703 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 -22.471 -4.555 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.158 4.158 4 C -0.026 4.026 5 O -0.236 6.236 6 C 0.084 3.916 7 C -0.188 4.188 8 C -0.117 4.117 9 C 0.029 3.971 10 F -0.125 7.125 11 C -0.136 4.136 12 C -0.067 4.067 13 C -0.054 4.054 14 C -0.152 4.152 15 N -0.178 5.178 16 C -0.167 4.167 17 C 0.028 3.972 18 C -0.497 4.497 19 H 0.091 0.909 20 C -0.157 4.157 21 N -0.457 5.457 22 Si 0.772 3.228 23 H -0.186 1.186 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.227 4.227 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.195 0.805 37 H 0.192 0.808 38 H 0.148 0.852 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.108 0.892 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.014 -22.141 -4.945 22.709 hybrid contribution 1.071 0.374 1.185 1.640 sum 0.057 -21.767 -3.761 22.089 Atomic orbital electron populations 1.21778 0.95347 1.02362 1.01749 1.21395 0.96308 0.93937 1.03362 1.21597 0.92424 0.99017 1.02784 1.23207 0.95783 0.80558 1.03095 1.86221 1.18092 1.31415 1.87863 1.19078 0.83629 0.92741 0.96166 1.21356 0.92600 0.98950 1.05855 1.21283 0.95833 0.95681 0.98913 1.17546 0.76907 0.94548 1.08139 1.91470 1.29973 1.96476 1.94539 1.21080 0.91844 0.99394 1.01321 1.18004 0.91937 0.90951 1.05817 1.19341 0.96385 0.93119 0.96539 1.22166 0.94617 0.97236 1.01183 1.67067 1.26433 1.01420 1.22904 1.22819 0.98698 0.98330 0.96863 1.18652 0.91505 0.92573 0.94454 1.19402 1.36706 0.95648 0.97932 0.90873 1.26601 0.90390 1.01795 0.96930 1.69691 1.28041 1.35289 1.12683 0.85733 0.80395 0.79057 0.77596 1.18591 1.19301 1.18650 1.21520 1.01645 0.97261 1.02302 0.93283 0.92887 0.91253 0.90276 0.90788 0.92624 0.91670 0.89504 0.90438 0.80467 0.80797 0.85189 0.83572 0.83834 0.89181 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.11 -1.42 5.93 30.59 0.18 -1.24 16 3 C -0.12 -2.27 5.58 30.59 0.17 -2.09 16 4 C 0.05 0.90 4.74 71.98 0.34 1.24 16 5 O -0.32 -9.57 8.49 -92.26 -0.78 -10.35 16 6 C 0.13 3.88 6.60 22.72 0.15 4.03 16 7 C -0.17 -3.56 9.03 22.33 0.20 -3.36 16 8 C -0.10 -2.08 10.01 22.34 0.22 -1.86 16 9 C 0.05 1.35 7.29 22.34 0.16 1.51 16 10 F -0.15 -4.17 17.26 44.97 0.78 -3.40 16 11 C -0.12 -3.99 9.51 22.52 0.21 -3.77 16 12 C -0.07 -2.39 5.50 -19.96 -0.11 -2.50 16 13 C -0.05 -2.28 5.27 -20.00 -0.11 -2.39 16 14 C 0.00 0.18 9.96 85.05 0.85 1.03 16 15 N -0.47 -22.28 10.32 -192.74 -1.99 -24.27 16 16 C -0.01 -0.26 10.96 85.36 0.94 0.68 16 17 C 0.03 1.70 5.12 -21.21 -0.11 1.59 16 18 C -0.47 -25.78 9.60 23.47 0.23 -25.55 16 19 H 0.07 4.24 8.06 -2.91 -0.02 4.21 16 20 C 0.06 3.17 5.42 85.25 0.46 3.63 16 21 N -0.83 -44.49 13.93 21.82 0.30 -44.18 16 22 Si 0.95 43.15 24.53 68.60 1.68 44.83 16 23 H -0.26 -11.43 6.70 99.48 0.67 -10.76 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.26 -12.62 6.85 99.48 0.68 -11.94 16 26 C -0.20 -9.87 6.79 23.14 0.16 -9.71 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.19 7.66 -2.39 -0.02 1.17 16 35 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 36 H 0.18 2.23 6.29 -2.91 -0.02 2.21 16 37 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.13 4.60 8.05 -2.91 -0.02 4.58 16 39 H 0.15 5.74 7.68 -2.91 -0.02 5.71 16 40 H 0.14 6.60 8.06 -2.91 -0.02 6.58 16 41 H 0.30 14.25 8.30 -92.70 -0.77 13.49 16 42 H 0.11 5.19 4.78 -2.91 -0.01 5.18 16 Total: -1.00 -63.45 354.00 5.62 -57.84 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.97 Total: 19.63 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 4.66 Total: -40.10 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -1.69 Total: -68.46 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.78 Total: -10.35 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.68 Total: 44.83 kcal Total: -63.45 5.62 -57.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243237829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.931 kcal (2) G-P(sol) polarization free energy of solvation -63.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds