Wall clock time and date at job start Tue Mar 31 2020 11:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47329 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.35813 * 116.99701 * 179.97438 * 5 4 3 7 7 C 1.38550 * 120.11868 * 0.02650 * 6 5 4 8 8 C 1.38182 * 120.11221 * 179.97438 * 7 6 5 9 9 C 1.38724 * 120.34766 * 0.02562 * 8 7 6 10 10 F 1.35099 * 119.88927 * 180.02562 * 9 8 7 11 11 C 1.38046 * 120.23005 * 359.73318 * 9 8 7 12 12 C 1.39644 * 119.88110 * 0.52117 * 11 9 8 13 13 C 1.47819 * 120.16940 * 179.74583 * 12 11 9 14 14 C 1.40337 * 120.35236 * 309.45267 * 13 12 11 15 15 C 1.36629 * 118.60382 * 180.29475 * 14 13 12 16 16 C 1.40903 * 119.26019 * 359.95637 * 15 14 13 17 17 C 1.40940 * 119.67458 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99729 * 0.02800 * 17 16 15 19 19 C 1.40076 * 120.00228 * 180.02562 * 17 16 15 20 20 N 1.30731 * 119.99823 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99958 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47479 * 90.00032 * 21 19 17 23 23 H 1.48500 * 109.47112 * 210.00232 * 21 19 17 24 24 H 1.48504 * 109.47444 * 329.99793 * 21 19 17 25 25 N 1.33803 * 120.65479 * 0.04755 * 16 15 14 26 26 C 1.31165 * 121.50628 * 359.97171 * 25 16 15 27 27 H 1.09002 * 109.47260 * 60.00251 * 1 2 3 28 28 H 1.09004 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47195 * 300.00087 * 1 2 3 30 30 H 1.08998 * 109.47443 * 240.00313 * 2 1 3 31 31 H 1.09002 * 109.47260 * 119.99749 * 2 1 3 32 32 H 1.09001 * 109.47484 * 59.99766 * 3 2 1 33 33 H 1.09002 * 109.46910 * 299.99963 * 3 2 1 34 34 H 1.09006 * 109.47154 * 59.99963 * 4 3 2 35 35 H 1.09002 * 109.47216 * 299.99925 * 4 3 2 36 36 H 1.08001 * 119.94050 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.82297 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.06166 * 180.29560 * 11 9 8 39 39 H 1.07998 * 120.69987 * 0.24891 * 14 13 12 40 40 H 1.08000 * 120.36891 * 180.02562 * 15 14 13 41 41 H 0.96996 * 119.99471 * 180.02562 * 20 19 17 42 42 H 1.07995 * 119.66366 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3926 2.9679 0.0010 7 6 6.2389 1.8709 0.0020 8 6 7.6088 2.0521 0.0025 9 6 8.1466 3.3309 0.0026 10 9 9.4873 3.4973 0.0025 11 6 7.3166 4.4340 -0.0034 12 6 5.9308 4.2620 0.0015 13 6 5.0362 5.4387 0.0008 14 6 5.2225 6.4717 0.9322 15 6 4.3711 7.5398 0.9034 16 6 3.3388 7.5720 -0.0551 17 6 2.4558 8.6699 -0.0929 18 1 2.5725 9.4813 0.6103 19 6 1.4268 8.7087 -1.0426 20 7 1.2852 7.7264 -1.8935 21 14 0.2570 10.1642 -1.0932 22 1 0.7997 11.2041 -2.0038 23 1 -1.0695 9.7161 -1.5881 24 1 0.1106 10.7294 0.2723 25 7 3.1882 6.5705 -0.9294 26 6 3.9891 5.5318 -0.9266 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9290 0.8909 36 1 5.8271 0.8725 0.0024 37 1 8.2641 1.1937 0.0029 38 1 7.7383 5.4282 -0.0082 39 1 6.0217 6.4231 1.6570 40 1 4.4886 8.3509 1.6068 41 1 0.5729 7.7535 -2.5513 42 1 3.8401 4.7400 -1.6456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243238802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:14 Heat of formation + Delta-G solvation = -46.282351 kcal Electronic energy + Delta-G solvation = -25239.077353 eV Core-core repulsion = 21484.001853 eV Total energy + Delta-G solvation = -3755.075500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.54019 -39.88886 -38.09932 -37.00182 -35.02126 -33.86224 -31.95249 -30.56392 -29.89471 -29.30096 -28.23283 -25.65701 -24.19225 -22.62803 -22.06674 -21.33207 -21.14617 -20.36402 -17.80704 -17.55394 -16.92757 -16.33499 -16.27088 -15.57102 -15.26116 -14.66292 -14.56215 -14.40321 -14.28372 -14.11040 -13.83999 -13.42505 -12.93655 -12.69319 -12.63186 -12.57063 -12.11150 -11.96469 -11.91292 -11.61549 -11.34586 -11.24525 -11.19221 -11.07910 -11.01654 -10.83751 -10.69545 -10.39625 -10.30771 -9.96800 -9.50473 -8.85665 -8.28316 -7.92602 -7.60597 -7.24849 -6.49631 -4.59048 1.40539 1.55586 2.69030 3.03136 3.05837 3.07833 3.12371 3.42511 3.85996 3.95086 4.57740 4.66752 4.81801 4.84291 4.95548 5.01222 5.08239 5.16821 5.26842 5.42504 5.47069 5.62077 5.66740 5.71730 5.76641 5.86926 5.96303 6.05230 6.08055 6.10200 6.15412 6.27583 6.29396 6.40203 6.50657 6.57595 6.75731 6.84933 7.01282 7.07293 7.35923 7.50897 7.69471 7.79928 7.97318 8.13712 8.54769 8.84233 10.04910 10.20541 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.004434 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.928483 B = 6313.634683 C = 9100.823779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.121 4.121 4 C 0.058 3.942 5 O -0.292 6.292 6 C 0.112 3.888 7 C -0.182 4.182 8 C -0.143 4.143 9 C 0.061 3.939 10 F -0.150 7.150 11 C -0.130 4.130 12 C 0.024 3.976 13 C -0.274 4.274 14 C -0.034 4.034 15 C -0.274 4.274 16 C 0.255 3.745 17 C -0.415 4.415 18 H 0.086 0.914 19 C 0.066 3.934 20 N -0.703 5.703 21 Si 0.909 3.091 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.260 1.260 25 N -0.489 5.489 26 C 0.174 3.826 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.275 0.725 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -12.490 2.059 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.017 4.017 5 O -0.206 6.206 6 C 0.066 3.934 7 C -0.200 4.200 8 C -0.163 4.163 9 C 0.042 3.958 10 F -0.129 7.129 11 C -0.149 4.149 12 C 0.022 3.978 13 C -0.279 4.279 14 C -0.057 4.057 15 C -0.297 4.297 16 C 0.132 3.868 17 C -0.445 4.445 18 H 0.104 0.896 19 C -0.161 4.161 20 N -0.323 5.323 21 Si 0.733 3.267 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.184 1.184 25 N -0.200 5.200 26 C 0.005 3.995 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.362 -12.291 1.288 12.433 hybrid contribution 0.648 0.249 0.632 0.939 sum 2.010 -12.042 1.919 12.358 Atomic orbital electron populations 1.21751 0.95315 1.01494 1.02387 1.21416 0.96372 0.95883 1.01975 1.21567 0.92647 0.97260 1.04389 1.22791 0.95527 0.82704 1.00687 1.86233 1.18380 1.27745 1.88194 1.19180 0.82676 0.93231 0.98288 1.20892 0.93138 0.98015 1.08004 1.20688 0.95162 0.95459 1.04948 1.17481 0.76801 0.94233 1.07313 1.91439 1.30413 1.96455 1.94547 1.21122 0.92172 0.98155 1.03442 1.18059 0.91361 0.90707 0.97663 1.18775 1.04603 0.97175 1.07346 1.20557 0.96667 0.92819 0.95665 1.21375 1.02178 1.00562 1.05569 1.18650 0.89794 0.91330 0.87048 1.19710 1.08710 1.03219 1.12904 0.89616 1.26153 0.98165 0.97066 0.94746 1.70139 1.24619 1.27535 1.09965 0.86297 0.79310 0.81258 0.79858 1.19249 1.19968 1.18410 1.68812 1.25514 1.01236 1.24452 1.22621 0.88354 0.94940 0.93565 0.92387 0.92767 0.92497 0.91890 0.91981 0.90699 0.90404 0.92456 0.92592 0.85286 0.85480 0.84608 0.88700 0.88257 0.91353 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.46 5.58 -26.73 -0.15 -1.61 16 4 C 0.06 0.74 4.74 37.16 0.18 0.92 16 5 O -0.29 -5.11 8.50 -19.15 -0.16 -5.28 16 6 C 0.11 1.95 6.61 -38.75 -0.26 1.69 16 7 C -0.18 -2.59 9.03 -39.49 -0.36 -2.95 16 8 C -0.14 -2.03 10.01 -39.42 -0.39 -2.42 16 9 C 0.06 0.97 7.29 -39.47 -0.29 0.69 16 10 F -0.15 -2.36 17.26 2.25 0.04 -2.32 16 11 C -0.13 -2.27 9.52 -39.13 -0.37 -2.64 16 12 C 0.02 0.46 5.50 -104.74 -0.58 -0.12 16 13 C -0.27 -6.12 5.30 -104.46 -0.55 -6.68 16 14 C -0.03 -0.75 9.61 -39.37 -0.38 -1.13 16 15 C -0.27 -6.65 9.76 -39.16 -0.38 -7.03 16 16 C 0.26 6.87 6.55 -84.98 -0.56 6.31 16 17 C -0.42 -10.84 9.12 -37.87 -0.35 -11.18 16 18 H 0.09 2.08 7.85 -52.48 -0.41 1.66 16 19 C 0.07 1.62 5.50 -17.33 -0.10 1.53 16 20 N -0.70 -18.24 11.44 55.55 0.64 -17.60 16 21 Si 0.91 17.98 29.56 -169.99 -5.02 12.96 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 25 N -0.49 -13.33 7.83 -10.83 -0.08 -13.42 16 26 C 0.17 4.25 9.96 -17.11 -0.17 4.08 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 35 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 37 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 42 H 0.12 2.74 7.70 -52.49 -0.40 2.34 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -28.62 360.53 -9.38 -38.00 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.73 Total: 5.01 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -4.49 Total: -22.79 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.55 Total: -31.02 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.16 Total: -5.28 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.62 -9.38 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243238802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.282 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds