Wall clock time and date at job start Tue Mar 31 2020 11:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47329 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.35813 * 116.99701 * 179.97438 * 5 4 3 7 7 C 1.38550 * 120.11868 * 0.02650 * 6 5 4 8 8 C 1.38182 * 120.11221 * 179.97438 * 7 6 5 9 9 C 1.38724 * 120.34766 * 0.02562 * 8 7 6 10 10 F 1.35099 * 119.88927 * 180.02562 * 9 8 7 11 11 C 1.38046 * 120.23005 * 359.73318 * 9 8 7 12 12 C 1.39644 * 119.88110 * 0.52117 * 11 9 8 13 13 C 1.47819 * 120.16940 * 179.74583 * 12 11 9 14 14 C 1.40337 * 120.35236 * 309.45267 * 13 12 11 15 15 C 1.36629 * 118.60382 * 180.29475 * 14 13 12 16 16 C 1.40903 * 119.26019 * 359.95637 * 15 14 13 17 17 C 1.40940 * 119.67458 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99729 * 0.02800 * 17 16 15 19 19 C 1.40076 * 120.00228 * 180.02562 * 17 16 15 20 20 N 1.30731 * 119.99823 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99958 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47479 * 90.00032 * 21 19 17 23 23 H 1.48500 * 109.47112 * 210.00232 * 21 19 17 24 24 H 1.48504 * 109.47444 * 329.99793 * 21 19 17 25 25 N 1.33803 * 120.65479 * 0.04755 * 16 15 14 26 26 C 1.31165 * 121.50628 * 359.97171 * 25 16 15 27 27 H 1.09002 * 109.47260 * 60.00251 * 1 2 3 28 28 H 1.09004 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47195 * 300.00087 * 1 2 3 30 30 H 1.08998 * 109.47443 * 240.00313 * 2 1 3 31 31 H 1.09002 * 109.47260 * 119.99749 * 2 1 3 32 32 H 1.09001 * 109.47484 * 59.99766 * 3 2 1 33 33 H 1.09002 * 109.46910 * 299.99963 * 3 2 1 34 34 H 1.09006 * 109.47154 * 59.99963 * 4 3 2 35 35 H 1.09002 * 109.47216 * 299.99925 * 4 3 2 36 36 H 1.08001 * 119.94050 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.82297 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.06166 * 180.29560 * 11 9 8 39 39 H 1.07998 * 120.69987 * 0.24891 * 14 13 12 40 40 H 1.08000 * 120.36891 * 180.02562 * 15 14 13 41 41 H 0.96996 * 119.99471 * 180.02562 * 20 19 17 42 42 H 1.07995 * 119.66366 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3926 2.9679 0.0010 7 6 6.2389 1.8709 0.0020 8 6 7.6088 2.0521 0.0025 9 6 8.1466 3.3309 0.0026 10 9 9.4873 3.4973 0.0025 11 6 7.3166 4.4340 -0.0034 12 6 5.9308 4.2620 0.0015 13 6 5.0362 5.4387 0.0008 14 6 5.2225 6.4717 0.9322 15 6 4.3711 7.5398 0.9034 16 6 3.3388 7.5720 -0.0551 17 6 2.4558 8.6699 -0.0929 18 1 2.5725 9.4813 0.6103 19 6 1.4268 8.7087 -1.0426 20 7 1.2852 7.7264 -1.8935 21 14 0.2570 10.1642 -1.0932 22 1 0.7997 11.2041 -2.0038 23 1 -1.0695 9.7161 -1.5881 24 1 0.1106 10.7294 0.2723 25 7 3.1882 6.5705 -0.9294 26 6 3.9891 5.5318 -0.9266 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9290 0.8909 36 1 5.8271 0.8725 0.0024 37 1 8.2641 1.1937 0.0029 38 1 7.7383 5.4282 -0.0082 39 1 6.0217 6.4231 1.6570 40 1 4.4886 8.3509 1.6068 41 1 0.5729 7.7535 -2.5513 42 1 3.8401 4.7400 -1.6456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243238802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:14 Heat of formation + Delta-G solvation = -59.307520 kcal Electronic energy + Delta-G solvation = -25239.642167 eV Core-core repulsion = 21484.001853 eV Total energy + Delta-G solvation = -3755.640314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.77760 -41.21032 -39.86343 -38.27568 -35.93018 -35.65632 -33.53122 -32.41928 -31.05179 -30.75043 -29.51195 -27.38703 -25.24561 -24.14418 -23.70828 -22.66561 -22.34326 -21.72767 -19.43079 -19.02996 -18.23844 -17.70289 -17.41196 -17.21353 -16.49332 -16.08115 -15.97941 -15.82420 -15.59672 -15.53879 -15.10845 -14.38248 -14.37137 -14.31871 -13.89633 -13.74689 -13.69773 -13.56790 -13.02105 -12.95339 -12.86915 -12.74187 -12.62319 -12.46753 -12.07087 -11.99714 -11.83140 -11.72991 -11.53287 -11.40292 -11.25368 -10.36941 -10.08113 -9.51461 -9.45397 -8.80308 -8.32672 -6.51531 0.06861 0.28083 0.94311 1.20839 1.40054 1.52617 1.55569 2.20819 2.28915 2.60903 2.85053 3.35483 3.74686 3.79762 3.92905 3.95712 3.99899 4.15752 4.16851 4.20382 4.25943 4.36537 4.38365 4.42161 4.61928 4.71250 4.84230 4.85255 4.90317 4.92738 4.97194 5.04319 5.11036 5.16715 5.20264 5.21910 5.31942 5.32258 5.43773 5.51019 5.68978 5.79678 5.91125 6.10557 6.23883 6.57996 6.68279 6.92560 8.16257 8.39748 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.004434 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.928483 B = 6313.634683 C = 9100.823779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.120 4.120 4 C 0.052 3.948 5 O -0.326 6.326 6 C 0.109 3.891 7 C -0.170 4.170 8 C -0.119 4.119 9 C 0.051 3.949 10 F -0.148 7.148 11 C -0.129 4.129 12 C -0.018 4.018 13 C -0.253 4.253 14 C -0.039 4.039 15 C -0.288 4.288 16 C 0.222 3.778 17 C -0.456 4.456 18 H 0.093 0.907 19 C 0.022 3.978 20 N -0.748 5.748 21 Si 0.990 3.010 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.253 1.253 25 N -0.521 5.521 26 C 0.151 3.849 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.281 0.719 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -14.955 2.654 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.158 4.158 4 C -0.023 4.023 5 O -0.240 6.240 6 C 0.063 3.937 7 C -0.188 4.188 8 C -0.137 4.137 9 C 0.032 3.968 10 F -0.127 7.127 11 C -0.148 4.148 12 C -0.019 4.019 13 C -0.258 4.258 14 C -0.062 4.062 15 C -0.310 4.310 16 C 0.098 3.902 17 C -0.486 4.486 18 H 0.111 0.889 19 C -0.201 4.201 20 N -0.369 5.369 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.177 1.177 25 N -0.233 5.233 26 C -0.015 4.015 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.549 -14.793 1.886 15.129 hybrid contribution 0.492 0.747 0.483 1.017 sum 3.041 -14.046 2.369 14.566 Atomic orbital electron populations 1.21779 0.95383 1.02425 1.01625 1.21390 0.96278 0.93742 1.03418 1.21583 0.92789 0.99050 1.02373 1.23099 0.95472 0.80995 1.02688 1.86211 1.18744 1.30806 1.88195 1.19319 0.83185 0.93388 0.97850 1.21247 0.92803 0.98659 1.06128 1.21148 0.95546 0.95756 1.01300 1.17548 0.76748 0.94602 1.07901 1.91448 1.30165 1.96507 1.94582 1.21085 0.91700 0.98937 1.03047 1.17958 0.91643 0.90548 1.01795 1.19031 1.03525 0.97976 1.05312 1.20894 0.96943 0.92297 0.96091 1.21570 1.02153 1.01776 1.05549 1.19089 0.91167 0.91895 0.88042 1.20048 1.10214 1.03815 1.14539 0.88921 1.27085 0.99380 0.99931 0.93669 1.70242 1.25822 1.29830 1.11024 0.85102 0.76773 0.77145 0.80064 1.18598 1.19155 1.17695 1.68722 1.27034 1.02142 1.25451 1.22754 0.89447 0.94671 0.94617 0.93322 0.90937 0.93206 0.90452 0.90371 0.92629 0.92628 0.90309 0.90312 0.81519 0.81628 0.84916 0.85885 0.86968 0.90844 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.11 -1.82 5.93 30.59 0.18 -1.64 16 3 C -0.12 -2.86 5.58 30.59 0.17 -2.69 16 4 C 0.05 1.21 4.74 71.98 0.34 1.55 16 5 O -0.33 -11.22 8.50 -91.45 -0.78 -11.99 16 6 C 0.11 3.58 6.61 22.81 0.15 3.73 16 7 C -0.17 -4.13 9.03 22.33 0.20 -3.93 16 8 C -0.12 -2.79 10.01 22.37 0.22 -2.57 16 9 C 0.05 1.48 7.29 22.34 0.16 1.65 16 10 F -0.15 -4.25 17.26 44.97 0.78 -3.47 16 11 C -0.13 -4.33 9.52 22.56 0.21 -4.12 16 12 C -0.02 -0.68 5.50 -19.94 -0.11 -0.79 16 13 C -0.25 -11.62 5.30 -19.76 -0.10 -11.73 16 14 C -0.04 -1.76 9.61 22.40 0.22 -1.55 16 15 C -0.29 -14.49 9.76 22.55 0.22 -14.27 16 16 C 0.22 12.60 6.55 40.16 0.26 12.86 16 17 C -0.46 -24.94 9.12 23.38 0.21 -24.72 16 18 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 19 C 0.02 1.13 5.50 85.30 0.47 1.59 16 20 N -0.75 -40.81 11.44 21.85 0.25 -40.56 16 21 Si 0.99 37.91 29.56 68.60 2.03 39.94 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 25 N -0.52 -30.12 7.83 -188.18 -1.47 -31.59 16 26 C 0.15 7.79 9.96 85.26 0.85 8.64 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.50 7.66 -2.38 -0.02 1.48 16 35 H 0.08 1.48 7.66 -2.39 -0.02 1.46 16 36 H 0.17 2.80 6.29 -2.91 -0.02 2.78 16 37 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 38 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 41 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 42 H 0.12 5.88 7.70 -2.91 -0.02 5.86 16 Total: -1.00 -66.33 360.53 6.20 -60.13 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 1.02 Total: 27.41 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.38 Total: -39.85 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.22 Total: -72.15 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.78 Total: -11.99 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -66.33 6.20 -60.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243238802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.818 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds