Wall clock time and date at job start Tue Mar 31 2020 11:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47255 * 2 1 4 4 C 1.52997 * 109.47255 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.35810 * 116.99741 * 180.02562 * 5 4 3 7 7 C 1.38538 * 120.12273 * 0.02562 * 6 5 4 8 8 C 1.38188 * 120.11673 * 180.27677 * 7 6 5 9 9 C 1.38732 * 120.35723 * 359.48531 * 8 7 6 10 10 F 1.35095 * 119.88436 * 180.25784 * 9 8 7 11 11 C 1.38036 * 120.23291 * 0.51623 * 9 8 7 12 12 C 1.39684 * 119.87790 * 359.74118 * 11 9 8 13 13 C 1.47696 * 120.17345 * 180.02562 * 12 11 9 14 14 C 1.39405 * 120.79147 * 64.98149 * 13 12 11 15 15 N 1.31643 * 120.65019 * 179.97438 * 14 13 12 16 16 C 1.32235 * 122.51232 * 0.02562 * 15 14 13 17 17 C 1.36442 * 121.53228 * 0.02562 * 16 15 14 18 18 C 1.41138 * 119.11458 * 359.69806 * 17 16 15 19 19 C 1.40867 * 121.11703 * 180.30346 * 18 17 16 20 20 H 1.07999 * 120.00331 * 204.84835 * 19 18 17 21 21 C 1.40162 * 119.99721 * 24.83738 * 19 18 17 22 22 N 1.30700 * 119.99874 * 13.77247 * 21 19 18 23 23 Si 1.86801 * 119.99974 * 193.76601 * 21 19 18 24 24 H 1.48497 * 109.46955 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46833 * 120.00286 * 23 21 19 26 26 H 1.48496 * 109.47173 * 240.00385 * 23 21 19 27 27 H 1.09000 * 109.47477 * 59.99803 * 1 2 3 28 28 H 1.09004 * 109.47422 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46874 * 299.99313 * 1 2 3 30 30 H 1.09003 * 109.46663 * 240.00197 * 2 1 3 31 31 H 1.08997 * 109.47382 * 120.00960 * 2 1 3 32 32 H 1.09003 * 109.47124 * 60.00479 * 3 2 1 33 33 H 1.08997 * 109.47710 * 300.00759 * 3 2 1 34 34 H 1.09004 * 109.47331 * 60.00534 * 4 3 2 35 35 H 1.09000 * 109.47477 * 300.00197 * 4 3 2 36 36 H 1.08004 * 119.93785 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.82152 * 179.74230 * 8 7 6 38 38 H 1.08002 * 120.05873 * 179.76980 * 11 9 8 39 39 H 1.08001 * 119.67966 * 0.02562 * 14 13 12 40 40 H 1.08005 * 119.23238 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.44342 * 179.97438 * 17 16 15 42 42 H 0.96998 * 119.99820 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.3927 2.9676 -0.0010 7 6 6.2389 1.8707 -0.0031 8 6 7.6089 2.0518 0.0016 9 6 8.1471 3.3305 -0.0022 10 9 9.4878 3.4964 -0.0028 11 6 7.3175 4.4337 -0.0002 12 6 5.9313 4.2620 0.0004 13 6 5.0376 5.4379 0.0021 14 6 5.0085 6.3136 -1.0822 15 7 4.2105 7.3606 -1.0780 16 6 3.4065 7.6375 -0.0653 17 6 3.3585 6.8455 1.0448 18 6 4.1824 5.7013 1.1082 19 6 4.1620 4.8510 2.2311 20 1 5.0245 4.2445 2.4650 21 6 3.0224 4.7921 3.0450 22 7 1.8948 5.3053 2.6286 23 14 3.1152 3.9800 4.7247 24 1 4.4945 3.4819 4.9581 25 1 2.7630 4.9706 5.7734 26 1 2.1621 2.8426 4.7779 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 5.8271 0.8723 -0.0043 37 1 8.2641 1.1933 0.0042 38 1 7.7396 5.4279 0.0006 39 1 5.6462 6.1309 -1.9345 40 1 2.7739 8.5113 -0.1176 41 1 2.6955 7.0884 1.8620 42 1 1.1061 5.2642 3.1916 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243238901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:17 Heat of formation + Delta-G solvation = -52.039427 kcal Electronic energy + Delta-G solvation = -26323.063128 eV Core-core repulsion = 22567.737983 eV Total energy + Delta-G solvation = -3755.325145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.39468 -39.70444 -38.14541 -36.80638 -34.84860 -34.18441 -32.18419 -30.27848 -29.71759 -28.98426 -27.81067 -25.95908 -24.04961 -22.93465 -21.67421 -21.34914 -20.97547 -20.21253 -17.71404 -17.47761 -16.71970 -16.16459 -16.05589 -15.58374 -15.11861 -14.57232 -14.46756 -14.37040 -14.23512 -14.16236 -13.72762 -13.27865 -12.85562 -12.70786 -12.50674 -12.47154 -12.26616 -12.06782 -11.75827 -11.49178 -11.43798 -11.30263 -11.12191 -11.02819 -10.94857 -10.68182 -10.50254 -10.28649 -10.17228 -9.79320 -9.51088 -8.68520 -8.01018 -7.95396 -7.68109 -7.27760 -6.86332 -4.61322 1.59894 1.75645 2.66163 2.79831 2.96796 3.02232 3.21993 3.66906 3.79359 4.10022 4.62037 4.74351 4.97629 5.01003 5.10295 5.15582 5.21756 5.33615 5.44444 5.55155 5.63955 5.67867 5.76689 5.80422 5.85684 5.86067 5.88957 6.11086 6.17077 6.25997 6.32884 6.46703 6.48114 6.54663 6.64980 6.79014 6.89128 6.91571 7.14923 7.24225 7.34594 7.49154 7.79815 8.04436 8.07944 8.41789 8.68321 8.73206 9.62423 9.99237 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.006502 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.382923 B = 4305.075427 C = 5551.627215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.118 4.118 4 C 0.059 3.941 5 O -0.272 6.272 6 C 0.142 3.858 7 C -0.195 4.195 8 C -0.133 4.133 9 C 0.050 3.950 10 F -0.151 7.151 11 C -0.120 4.120 12 C 0.021 3.979 13 C -0.230 4.230 14 C 0.131 3.869 15 N -0.580 5.580 16 C 0.081 3.919 17 C -0.208 4.208 18 C 0.155 3.845 19 C -0.423 4.423 20 H 0.078 0.922 21 C 0.081 3.919 22 N -0.776 5.776 23 Si 0.902 3.098 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.272 1.272 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -9.879 -1.368 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.156 4.156 4 C -0.017 4.017 5 O -0.184 6.184 6 C 0.095 3.905 7 C -0.214 4.214 8 C -0.152 4.152 9 C 0.031 3.969 10 F -0.130 7.130 11 C -0.139 4.139 12 C 0.019 3.981 13 C -0.236 4.236 14 C -0.027 4.027 15 N -0.294 5.294 16 C -0.067 4.067 17 C -0.230 4.230 18 C 0.147 3.853 19 C -0.454 4.454 20 H 0.096 0.904 21 C -0.139 4.139 22 N -0.400 5.400 23 Si 0.726 3.274 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.197 1.197 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.456 -9.090 -2.010 9.321 hybrid contribution 0.242 -1.260 1.606 2.055 sum 0.698 -10.351 -0.404 10.382 Atomic orbital electron populations 1.21741 0.95476 1.01313 1.02287 1.21419 0.96244 0.96167 1.01838 1.21516 0.92866 0.96847 1.04372 1.22743 0.95522 0.83193 1.00251 1.86355 1.17911 1.26902 1.87231 1.19232 0.82954 0.93011 0.95324 1.20910 0.93171 0.98118 1.09157 1.20692 0.95148 0.95401 1.03976 1.17414 0.76743 0.94210 1.08583 1.91425 1.30442 1.96463 1.94702 1.21123 0.92146 0.98066 1.02566 1.17832 0.91028 0.90823 0.98405 1.19214 1.07723 0.98466 0.98152 1.22035 0.95329 0.90126 0.95252 1.67304 1.10992 1.21132 1.29990 1.21696 0.96110 0.98173 0.90701 1.21947 1.04824 0.96285 0.99987 1.17632 0.87530 0.90102 0.90033 1.19450 0.99757 1.19697 1.06469 0.90360 1.25945 0.94625 0.94054 0.99303 1.69755 1.00364 1.33877 1.36052 0.86335 0.79913 0.79589 0.81558 1.18180 1.19452 1.19702 0.92579 0.92885 0.92466 0.92081 0.91985 0.90238 0.90965 0.92980 0.92669 0.85382 0.85614 0.84728 0.86331 0.86596 0.85424 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.33 5.93 -26.74 -0.16 -1.48 16 3 C -0.12 -1.72 5.58 -26.74 -0.15 -1.87 16 4 C 0.06 0.90 4.74 37.16 0.18 1.08 16 5 O -0.27 -5.50 8.73 -19.14 -0.17 -5.66 16 6 C 0.14 2.77 6.04 -38.73 -0.23 2.53 16 7 C -0.19 -3.16 9.03 -39.49 -0.36 -3.52 16 8 C -0.13 -2.09 10.01 -39.42 -0.39 -2.48 16 9 C 0.05 0.86 7.29 -39.47 -0.29 0.57 16 10 F -0.15 -2.55 17.26 2.25 0.04 -2.52 16 11 C -0.12 -2.26 9.73 -39.12 -0.38 -2.64 16 12 C 0.02 0.43 4.50 -104.76 -0.47 -0.04 16 13 C -0.23 -5.42 5.00 -104.05 -0.52 -5.94 16 14 C 0.13 3.03 10.92 -17.20 -0.19 2.84 16 15 N -0.58 -14.07 10.32 -13.35 -0.14 -14.21 16 16 C 0.08 1.93 11.08 -18.03 -0.20 1.73 16 17 C -0.21 -5.23 8.72 -39.13 -0.34 -5.57 16 18 C 0.15 3.92 5.44 -106.25 -0.58 3.34 16 19 C -0.42 -10.49 7.52 -37.87 -0.28 -10.77 16 20 H 0.08 1.96 7.18 -52.49 -0.38 1.58 16 21 C 0.08 1.90 5.25 -17.31 -0.09 1.81 16 22 N -0.78 -18.51 10.81 55.56 0.60 -17.91 16 23 Si 0.90 17.71 29.58 -169.99 -5.03 12.68 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 35 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 36 H 0.13 1.72 6.29 -52.48 -0.33 1.39 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 41 H 0.13 3.24 6.15 -52.49 -0.32 2.92 16 42 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -27.19 357.20 -9.01 -36.21 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.61 Total: 7.64 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -4.09 Total: -21.61 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.46 Total: -32.11 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.17 Total: -5.66 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.19 -9.01 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243238901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.834 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds