Wall clock time and date at job start Tue Mar 31 2020 11:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47255 * 2 1 4 4 C 1.52997 * 109.47255 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.35810 * 116.99741 * 180.02562 * 5 4 3 7 7 C 1.38538 * 120.12273 * 0.02562 * 6 5 4 8 8 C 1.38188 * 120.11673 * 180.27677 * 7 6 5 9 9 C 1.38732 * 120.35723 * 359.48531 * 8 7 6 10 10 F 1.35095 * 119.88436 * 180.25784 * 9 8 7 11 11 C 1.38036 * 120.23291 * 0.51623 * 9 8 7 12 12 C 1.39684 * 119.87790 * 359.74118 * 11 9 8 13 13 C 1.47696 * 120.17345 * 180.02562 * 12 11 9 14 14 C 1.39405 * 120.79147 * 64.98149 * 13 12 11 15 15 N 1.31643 * 120.65019 * 179.97438 * 14 13 12 16 16 C 1.32235 * 122.51232 * 0.02562 * 15 14 13 17 17 C 1.36442 * 121.53228 * 0.02562 * 16 15 14 18 18 C 1.41138 * 119.11458 * 359.69806 * 17 16 15 19 19 C 1.40867 * 121.11703 * 180.30346 * 18 17 16 20 20 H 1.07999 * 120.00331 * 204.84835 * 19 18 17 21 21 C 1.40162 * 119.99721 * 24.83738 * 19 18 17 22 22 N 1.30700 * 119.99874 * 13.77247 * 21 19 18 23 23 Si 1.86801 * 119.99974 * 193.76601 * 21 19 18 24 24 H 1.48497 * 109.46955 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46833 * 120.00286 * 23 21 19 26 26 H 1.48496 * 109.47173 * 240.00385 * 23 21 19 27 27 H 1.09000 * 109.47477 * 59.99803 * 1 2 3 28 28 H 1.09004 * 109.47422 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46874 * 299.99313 * 1 2 3 30 30 H 1.09003 * 109.46663 * 240.00197 * 2 1 3 31 31 H 1.08997 * 109.47382 * 120.00960 * 2 1 3 32 32 H 1.09003 * 109.47124 * 60.00479 * 3 2 1 33 33 H 1.08997 * 109.47710 * 300.00759 * 3 2 1 34 34 H 1.09004 * 109.47331 * 60.00534 * 4 3 2 35 35 H 1.09000 * 109.47477 * 300.00197 * 4 3 2 36 36 H 1.08004 * 119.93785 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.82152 * 179.74230 * 8 7 6 38 38 H 1.08002 * 120.05873 * 179.76980 * 11 9 8 39 39 H 1.08001 * 119.67966 * 0.02562 * 14 13 12 40 40 H 1.08005 * 119.23238 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.44342 * 179.97438 * 17 16 15 42 42 H 0.96998 * 119.99820 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.3927 2.9676 -0.0010 7 6 6.2389 1.8707 -0.0031 8 6 7.6089 2.0518 0.0016 9 6 8.1471 3.3305 -0.0022 10 9 9.4878 3.4964 -0.0028 11 6 7.3175 4.4337 -0.0002 12 6 5.9313 4.2620 0.0004 13 6 5.0376 5.4379 0.0021 14 6 5.0085 6.3136 -1.0822 15 7 4.2105 7.3606 -1.0780 16 6 3.4065 7.6375 -0.0653 17 6 3.3585 6.8455 1.0448 18 6 4.1824 5.7013 1.1082 19 6 4.1620 4.8510 2.2311 20 1 5.0245 4.2445 2.4650 21 6 3.0224 4.7921 3.0450 22 7 1.8948 5.3053 2.6286 23 14 3.1152 3.9800 4.7247 24 1 4.4945 3.4819 4.9581 25 1 2.7630 4.9706 5.7734 26 1 2.1621 2.8426 4.7779 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 5.8271 0.8723 -0.0043 37 1 8.2641 1.1933 0.0042 38 1 7.7396 5.4279 0.0006 39 1 5.6462 6.1309 -1.9345 40 1 2.7739 8.5113 -0.1176 41 1 2.6955 7.0884 1.8620 42 1 1.1061 5.2642 3.1916 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243238901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:16 Heat of formation + Delta-G solvation = -63.788908 kcal Electronic energy + Delta-G solvation = -26323.572624 eV Core-core repulsion = 22567.737983 eV Total energy + Delta-G solvation = -3755.834641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.73543 -41.15356 -39.88207 -38.17493 -36.01158 -35.89941 -33.76791 -32.07633 -30.95941 -30.43885 -29.23920 -27.78071 -25.24978 -24.43013 -23.39409 -22.70304 -22.26216 -21.66587 -19.47246 -18.90467 -18.14555 -17.57615 -17.42009 -17.16546 -16.48120 -16.28555 -16.06180 -15.79835 -15.50674 -15.49197 -15.07650 -14.45155 -14.37191 -14.29977 -14.08185 -13.79407 -13.66965 -13.57960 -13.17855 -13.01004 -12.93808 -12.81421 -12.56045 -12.22177 -12.00634 -11.98553 -11.85258 -11.70532 -11.46944 -11.38943 -11.25587 -10.20460 -9.87829 -9.70801 -9.42675 -8.82043 -8.59979 -6.48043 0.18597 0.36283 0.92969 1.01198 1.34887 1.47705 1.52470 2.15035 2.39920 2.69438 2.80033 3.39276 3.69571 3.79414 3.93465 3.94797 4.00686 4.05436 4.17239 4.21965 4.31021 4.36318 4.44547 4.50372 4.63440 4.76537 4.85648 4.91686 4.99399 4.99644 5.03682 5.05683 5.19630 5.20263 5.21713 5.26757 5.31559 5.42446 5.46684 5.51619 5.63024 5.89017 5.94875 6.22382 6.53063 6.71571 6.83259 6.88081 7.74956 8.24671 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.006502 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.382923 B = 4305.075427 C = 5551.627215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.115 4.115 4 C 0.052 3.948 5 O -0.309 6.309 6 C 0.129 3.871 7 C -0.184 4.184 8 C -0.114 4.114 9 C 0.044 3.956 10 F -0.148 7.148 11 C -0.124 4.124 12 C -0.016 4.016 13 C -0.227 4.227 14 C 0.116 3.884 15 N -0.593 5.593 16 C 0.075 3.925 17 C -0.231 4.231 18 C 0.129 3.871 19 C -0.437 4.437 20 H 0.069 0.931 21 C 0.047 3.953 22 N -0.801 5.801 23 Si 0.966 3.034 24 H -0.261 1.261 25 H -0.263 1.263 26 H -0.261 1.261 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -12.931 -1.066 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.153 4.153 4 C -0.023 4.023 5 O -0.222 6.222 6 C 0.082 3.918 7 C -0.203 4.203 8 C -0.133 4.133 9 C 0.025 3.975 10 F -0.127 7.127 11 C -0.143 4.143 12 C -0.018 4.018 13 C -0.232 4.232 14 C -0.040 4.040 15 N -0.308 5.308 16 C -0.073 4.073 17 C -0.253 4.253 18 C 0.121 3.879 19 C -0.467 4.467 20 H 0.088 0.912 21 C -0.171 4.171 22 N -0.426 5.426 23 Si 0.787 3.213 24 H -0.184 1.184 25 H -0.187 1.187 26 H -0.185 1.185 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.181 0.819 37 H 0.183 0.817 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.136 0.864 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.343 -12.147 -1.730 12.343 hybrid contribution 0.001 -0.356 1.450 1.493 sum 1.345 -12.503 -0.279 12.578 Atomic orbital electron populations 1.21760 0.95164 1.02463 1.01563 1.21398 0.96479 0.93674 1.03299 1.21512 0.92846 0.98888 1.02011 1.23036 0.95596 0.81624 1.02052 1.86315 1.18560 1.29825 1.87454 1.19393 0.83297 0.93393 0.95717 1.21245 0.93013 0.98622 1.07386 1.21116 0.95388 0.95789 1.00988 1.17475 0.76723 0.94524 1.08808 1.91434 1.30090 1.96508 1.94697 1.21099 0.91705 0.98839 1.02643 1.17826 0.91452 0.90797 1.01727 1.19492 1.07219 0.99188 0.97307 1.22416 0.95520 0.90060 0.96049 1.67347 1.11496 1.21837 1.30108 1.21999 0.96269 0.98699 0.90352 1.21948 1.05766 0.97193 1.00421 1.17992 0.88395 0.90482 0.91068 1.19462 1.00058 1.20040 1.07178 0.91247 1.26658 0.93839 0.94367 1.02255 1.69791 1.01014 1.34374 1.37373 0.85381 0.79783 0.78991 0.77148 1.18414 1.18707 1.18519 0.92919 0.90739 0.93686 0.90065 0.90926 0.93500 0.92458 0.90255 0.91367 0.81931 0.81710 0.84997 0.84304 0.84476 0.86422 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.11 -2.24 5.93 30.59 0.18 -2.05 16 3 C -0.11 -3.31 5.58 30.59 0.17 -3.14 16 4 C 0.05 1.50 4.74 71.98 0.34 1.84 16 5 O -0.31 -12.47 8.73 -91.41 -0.80 -13.27 16 6 C 0.13 4.92 6.04 22.82 0.14 5.06 16 7 C -0.18 -5.38 9.03 22.33 0.20 -5.18 16 8 C -0.11 -3.14 10.01 22.38 0.22 -2.92 16 9 C 0.04 1.43 7.29 22.34 0.16 1.59 16 10 F -0.15 -4.67 17.26 44.97 0.78 -3.90 16 11 C -0.12 -4.63 9.73 22.57 0.22 -4.41 16 12 C -0.02 -0.69 4.50 -19.95 -0.09 -0.78 16 13 C -0.23 -11.03 5.00 -19.49 -0.10 -11.12 16 14 C 0.12 5.54 10.92 85.00 0.93 6.46 16 15 N -0.59 -29.50 10.32 -196.15 -2.02 -31.52 16 16 C 0.07 3.70 11.08 84.21 0.93 4.63 16 17 C -0.23 -12.11 8.72 22.56 0.20 -11.91 16 18 C 0.13 6.77 5.44 -20.92 -0.11 6.65 16 19 C -0.44 -22.30 7.52 23.38 0.18 -22.13 16 20 H 0.07 3.56 7.18 -2.91 -0.02 3.54 16 21 C 0.05 2.24 5.25 85.33 0.45 2.69 16 22 N -0.80 -39.24 10.81 21.86 0.24 -39.01 16 23 Si 0.97 36.26 29.58 68.60 2.03 38.29 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 25 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 26 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.85 7.66 -2.38 -0.02 1.83 16 35 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 36 H 0.16 3.57 6.29 -2.91 -0.02 3.55 16 37 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 38 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.14 5.85 8.06 -2.91 -0.02 5.82 16 40 H 0.14 5.96 8.06 -2.91 -0.02 5.94 16 41 H 0.12 6.28 6.15 -2.91 -0.02 6.26 16 42 H 0.29 12.83 8.29 -92.71 -0.77 12.06 16 Total: -1.00 -60.89 357.20 5.98 -54.91 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 1.03 Total: 31.46 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.73 Total: -36.96 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -1.79 Total: -70.53 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.80 Total: -13.27 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -60.89 5.98 -54.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243238901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.878 kcal (2) G-P(sol) polarization free energy of solvation -60.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds