Wall clock time and date at job start Tue Mar 31 2020 11:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47420 * 2 1 4 4 C 1.53008 * 109.47120 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46930 * 180.02562 * 4 3 2 6 6 C 1.35815 * 116.99653 * 180.02562 * 5 4 3 7 7 C 1.38605 * 120.11040 * 359.97438 * 6 5 4 8 8 C 1.38180 * 120.11722 * 179.72974 * 7 6 5 9 9 C 1.38345 * 120.34288 * 359.97438 * 8 7 6 10 10 C 1.38242 * 120.21763 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.06471 * 179.97438 * 10 9 8 12 12 C 1.39562 * 119.87531 * 0.02562 * 10 9 8 13 13 C 1.48245 * 120.16602 * 180.02562 * 12 10 9 14 14 C 1.40100 * 120.82336 * 244.95283 * 13 12 10 15 15 C 1.38451 * 119.41870 * 180.02562 * 14 13 12 16 16 N 1.31510 * 121.15311 * 359.97438 * 15 14 13 17 17 C 1.33658 * 121.80574 * 0.02562 * 16 15 14 18 18 C 1.41435 * 119.77820 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00226 * 180.02562 * 18 17 16 20 20 C 1.40035 * 119.99716 * 359.97438 * 18 17 16 21 21 N 1.30733 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47202 * 89.99852 * 22 20 18 24 24 H 1.48499 * 109.46990 * 210.00291 * 22 20 18 25 25 H 1.48500 * 109.47142 * 330.00154 * 22 20 18 26 26 C 1.39388 * 120.82818 * 64.67302 * 13 12 10 27 27 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46852 * 300.00146 * 1 2 3 29 29 H 1.09007 * 109.46425 * 59.99569 * 1 2 3 30 30 H 1.09005 * 109.46931 * 239.99744 * 2 1 3 31 31 H 1.08998 * 109.47028 * 120.00419 * 2 1 3 32 32 H 1.08999 * 109.47074 * 60.00359 * 3 2 1 33 33 H 1.08998 * 109.47363 * 300.00215 * 3 2 1 34 34 H 1.08999 * 109.46852 * 60.00225 * 4 3 2 35 35 H 1.08998 * 109.47180 * 300.00329 * 4 3 2 36 36 H 1.08005 * 119.93811 * 359.74758 * 7 6 5 37 37 H 1.08005 * 119.82811 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.89250 * 180.02562 * 9 8 7 39 39 H 1.08000 * 120.28570 * 359.97438 * 14 13 12 40 40 H 1.08000 * 119.42628 * 180.02562 * 15 14 13 41 41 H 0.97002 * 119.99649 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.58950 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4423 0.0006 5 8 4.0465 2.7897 0.0012 6 6 5.3930 2.9675 0.0013 7 6 6.2393 1.8699 0.0014 8 6 7.6093 2.0506 -0.0042 9 6 8.1459 3.3257 -0.0104 10 6 7.3148 4.4304 -0.0105 11 9 7.8422 5.6742 -0.0160 12 6 5.9298 4.2584 -0.0038 13 6 5.0326 5.4384 -0.0045 14 6 4.1973 5.7058 1.0881 15 6 3.3705 6.8158 1.0564 16 7 3.3558 7.6239 0.0189 17 6 4.1326 7.4141 -1.0483 18 6 4.0827 8.3112 -2.1407 19 1 4.7084 8.1449 -3.0050 20 6 3.2210 9.4144 -2.1018 21 7 2.4632 9.6153 -1.0557 22 14 3.1545 10.5988 -3.5448 23 1 2.1247 10.1426 -4.5126 24 1 2.8065 11.9568 -3.0549 25 1 4.4796 10.6385 -4.2141 26 6 5.0031 6.3128 -1.0896 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5140 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.9338 0.9284 -0.8891 35 1 3.9331 0.9286 0.8908 36 1 5.8273 0.8715 0.0055 37 1 8.2644 1.1920 -0.0045 38 1 9.2177 3.4586 -0.0151 39 1 4.1979 5.0512 1.9471 40 1 2.7269 7.0223 1.8988 41 1 1.8666 10.3797 -1.0286 42 1 5.6347 6.1435 -1.9491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243269541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:13 Heat of formation + Delta-G solvation = -40.622608 kcal Electronic energy + Delta-G solvation = -25453.720865 eV Core-core repulsion = 21698.890790 eV Total energy + Delta-G solvation = -3754.830075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.48196 -40.03709 -38.00644 -37.19649 -35.16092 -33.67729 -32.28108 -30.06597 -29.86786 -29.31443 -28.35231 -25.61313 -24.25069 -23.23434 -21.86999 -21.37933 -21.11495 -20.44664 -18.28728 -17.31400 -16.48808 -16.40267 -15.80114 -15.70975 -15.32516 -15.09016 -14.71808 -14.44472 -14.35172 -14.07965 -13.85669 -13.66890 -12.92632 -12.79528 -12.67050 -12.35947 -12.21750 -12.09330 -11.74159 -11.69044 -11.43332 -11.27552 -11.13103 -11.11929 -10.99509 -10.74068 -10.69909 -10.58398 -10.35701 -9.90024 -9.31996 -8.63381 -8.21643 -7.74717 -7.56461 -7.50558 -6.33475 -4.45002 1.26966 1.43834 2.82531 2.93285 3.12662 3.16029 3.17058 3.24831 3.76079 4.00031 4.52580 4.70239 4.71573 4.79632 4.88421 4.91310 5.00990 5.06385 5.17072 5.20829 5.36975 5.42918 5.51490 5.61954 5.62336 5.73569 5.94765 5.96450 6.04992 6.06296 6.14568 6.16875 6.25870 6.32274 6.41234 6.57170 6.78880 6.91022 6.94929 7.18568 7.36904 7.52425 7.61806 7.76559 8.05890 8.29398 8.72254 8.98871 10.18312 10.38941 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.004274 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.336182 B = 6550.031432 C = 8518.841599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.121 4.121 4 C 0.058 3.942 5 O -0.290 6.290 6 C 0.168 3.832 7 C -0.226 4.226 8 C -0.063 4.063 9 C -0.197 4.197 10 C 0.146 3.854 11 F -0.125 7.125 12 C -0.089 4.089 13 C 0.008 3.992 14 C -0.284 4.284 15 C 0.122 3.878 16 N -0.481 5.481 17 C 0.258 3.742 18 C -0.435 4.435 19 H 0.082 0.918 20 C 0.070 3.930 21 N -0.718 5.718 22 Si 0.906 3.094 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.245 4.245 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.272 0.728 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 -17.140 2.018 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.159 4.159 4 C -0.017 4.017 5 O -0.203 6.203 6 C 0.122 3.878 7 C -0.245 4.245 8 C -0.081 4.081 9 C -0.216 4.216 10 C 0.126 3.874 11 F -0.103 7.103 12 C -0.090 4.090 13 C 0.002 3.998 14 C -0.308 4.308 15 C -0.043 4.043 16 N -0.194 5.194 17 C 0.133 3.867 18 C -0.466 4.466 19 H 0.100 0.900 20 C -0.154 4.154 21 N -0.339 5.339 22 Si 0.730 3.270 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.186 1.186 26 C -0.268 4.268 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.718 -16.052 2.074 16.276 hybrid contribution 0.768 -0.310 -0.569 1.005 sum 2.487 -16.362 1.505 16.618 Atomic orbital electron populations 1.21751 0.95235 1.01606 1.02368 1.21418 0.96437 0.95733 1.02083 1.21577 0.92487 0.97444 1.04379 1.22855 0.95656 0.82254 1.00985 1.86242 1.18166 1.28316 1.87553 1.18664 0.82858 0.92171 0.94143 1.21153 0.94240 0.97869 1.11274 1.20642 0.94202 0.96265 0.96980 1.20907 1.00028 0.91568 1.09063 1.17428 0.90105 0.79907 0.99969 1.91535 1.86221 1.39294 1.93297 1.18346 0.91527 0.92463 1.06684 1.18147 0.94869 0.91591 0.95212 1.21181 1.06439 1.03557 0.99589 1.22402 0.94869 0.90579 0.96434 1.68718 1.22881 1.27801 1.00010 1.18491 0.87318 0.89618 0.91308 1.19587 1.19519 1.05986 1.01512 0.89971 1.26040 0.94529 0.98260 0.96616 1.70140 1.14314 1.23485 1.25995 0.86362 0.79698 0.79400 0.81552 1.19456 1.20134 1.18567 1.21758 1.06656 0.99636 0.98770 0.92669 0.92445 0.92424 0.91845 0.91863 0.90531 0.90518 0.92224 0.92231 0.85209 0.85190 0.84887 0.89013 0.86393 0.91728 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.35 5.58 -26.73 -0.15 -1.50 16 4 C 0.06 0.69 4.74 37.16 0.18 0.87 16 5 O -0.29 -5.01 9.38 -19.16 -0.18 -5.19 16 6 C 0.17 2.90 6.67 -38.86 -0.26 2.64 16 7 C -0.23 -3.01 9.03 -39.47 -0.36 -3.37 16 8 C -0.06 -0.76 10.03 -39.56 -0.40 -1.16 16 9 C -0.20 -2.78 10.01 -39.54 -0.40 -3.18 16 10 C 0.15 2.67 7.24 -39.09 -0.28 2.38 16 11 F -0.13 -2.52 16.69 2.25 0.04 -2.48 16 12 C -0.09 -1.78 5.39 -104.70 -0.56 -2.35 16 13 C 0.01 0.20 4.64 -104.66 -0.49 -0.29 16 14 C -0.28 -6.79 9.62 -38.80 -0.37 -7.16 16 15 C 0.12 3.10 11.17 -17.61 -0.20 2.90 16 16 N -0.48 -13.80 7.85 -11.22 -0.09 -13.89 16 17 C 0.26 7.37 6.55 -85.03 -0.56 6.81 16 18 C -0.43 -12.10 9.14 -37.69 -0.34 -12.45 16 19 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 20 C 0.07 1.85 5.50 -17.35 -0.10 1.76 16 21 N -0.72 -19.68 11.46 55.55 0.64 -19.05 16 22 Si 0.91 19.15 29.56 -169.99 -5.02 14.13 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 26 C -0.25 -6.42 9.42 -38.32 -0.36 -6.78 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 36 H 0.13 1.33 6.29 -52.48 -0.33 1.00 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 41 H 0.27 6.73 8.29 -40.82 -0.34 6.39 16 42 H 0.10 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -31.74 361.86 -9.34 -41.09 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.75 Total: 2.81 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -4.43 Total: -22.87 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.55 Total: -32.94 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.18 Total: -5.19 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.74 -9.34 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243269541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.465 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds