Wall clock time and date at job start Tue Mar 31 2020 11:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47420 * 2 1 4 4 C 1.53008 * 109.47120 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46930 * 180.02562 * 4 3 2 6 6 C 1.35815 * 116.99653 * 180.02562 * 5 4 3 7 7 C 1.38605 * 120.11040 * 359.97438 * 6 5 4 8 8 C 1.38180 * 120.11722 * 179.72974 * 7 6 5 9 9 C 1.38345 * 120.34288 * 359.97438 * 8 7 6 10 10 C 1.38242 * 120.21763 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.06471 * 179.97438 * 10 9 8 12 12 C 1.39562 * 119.87531 * 0.02562 * 10 9 8 13 13 C 1.48245 * 120.16602 * 180.02562 * 12 10 9 14 14 C 1.40100 * 120.82336 * 244.95283 * 13 12 10 15 15 C 1.38451 * 119.41870 * 180.02562 * 14 13 12 16 16 N 1.31510 * 121.15311 * 359.97438 * 15 14 13 17 17 C 1.33658 * 121.80574 * 0.02562 * 16 15 14 18 18 C 1.41435 * 119.77820 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00226 * 180.02562 * 18 17 16 20 20 C 1.40035 * 119.99716 * 359.97438 * 18 17 16 21 21 N 1.30733 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47202 * 89.99852 * 22 20 18 24 24 H 1.48499 * 109.46990 * 210.00291 * 22 20 18 25 25 H 1.48500 * 109.47142 * 330.00154 * 22 20 18 26 26 C 1.39388 * 120.82818 * 64.67302 * 13 12 10 27 27 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46852 * 300.00146 * 1 2 3 29 29 H 1.09007 * 109.46425 * 59.99569 * 1 2 3 30 30 H 1.09005 * 109.46931 * 239.99744 * 2 1 3 31 31 H 1.08998 * 109.47028 * 120.00419 * 2 1 3 32 32 H 1.08999 * 109.47074 * 60.00359 * 3 2 1 33 33 H 1.08998 * 109.47363 * 300.00215 * 3 2 1 34 34 H 1.08999 * 109.46852 * 60.00225 * 4 3 2 35 35 H 1.08998 * 109.47180 * 300.00329 * 4 3 2 36 36 H 1.08005 * 119.93811 * 359.74758 * 7 6 5 37 37 H 1.08005 * 119.82811 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.89250 * 180.02562 * 9 8 7 39 39 H 1.08000 * 120.28570 * 359.97438 * 14 13 12 40 40 H 1.08000 * 119.42628 * 180.02562 * 15 14 13 41 41 H 0.97002 * 119.99649 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.58950 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4423 0.0006 5 8 4.0465 2.7897 0.0012 6 6 5.3930 2.9675 0.0013 7 6 6.2393 1.8699 0.0014 8 6 7.6093 2.0506 -0.0042 9 6 8.1459 3.3257 -0.0104 10 6 7.3148 4.4304 -0.0105 11 9 7.8422 5.6742 -0.0160 12 6 5.9298 4.2584 -0.0038 13 6 5.0326 5.4384 -0.0045 14 6 4.1973 5.7058 1.0881 15 6 3.3705 6.8158 1.0564 16 7 3.3558 7.6239 0.0189 17 6 4.1326 7.4141 -1.0483 18 6 4.0827 8.3112 -2.1407 19 1 4.7084 8.1449 -3.0050 20 6 3.2210 9.4144 -2.1018 21 7 2.4632 9.6153 -1.0557 22 14 3.1545 10.5988 -3.5448 23 1 2.1247 10.1426 -4.5126 24 1 2.8065 11.9568 -3.0549 25 1 4.4796 10.6385 -4.2141 26 6 5.0031 6.3128 -1.0896 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5140 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.9338 0.9284 -0.8891 35 1 3.9331 0.9286 0.8908 36 1 5.8273 0.8715 0.0055 37 1 8.2644 1.1920 -0.0045 38 1 9.2177 3.4586 -0.0151 39 1 4.1979 5.0512 1.9471 40 1 2.7269 7.0223 1.8988 41 1 1.8666 10.3797 -1.0286 42 1 5.6347 6.1435 -1.9491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243269541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:12 Heat of formation + Delta-G solvation = -57.363158 kcal Electronic energy + Delta-G solvation = -25454.446790 eV Core-core repulsion = 21698.890790 eV Total energy + Delta-G solvation = -3755.556000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.92221 -41.26361 -39.88504 -38.38222 -35.98685 -35.60990 -33.92470 -31.94661 -31.05437 -30.56753 -29.63396 -27.64899 -25.19842 -24.67986 -23.37565 -22.75352 -22.47217 -21.79399 -19.65627 -18.99977 -17.76592 -17.57067 -17.36943 -16.97613 -16.73681 -16.62195 -16.20702 -15.97315 -15.60195 -15.57528 -15.47838 -14.50102 -14.42474 -14.14884 -14.01729 -13.84812 -13.72909 -13.34771 -13.01634 -12.90205 -12.83329 -12.71433 -12.65527 -12.34184 -12.20974 -11.99478 -11.82730 -11.80773 -11.73490 -11.45426 -11.23722 -10.26637 -9.64123 -9.57106 -9.55571 -9.18810 -8.31798 -6.55446 0.02275 0.26428 0.86872 1.05775 1.37762 1.50725 1.53816 2.09875 2.21637 2.56990 2.81813 3.36022 3.64336 3.82316 3.85039 3.90897 4.04988 4.07018 4.10262 4.16985 4.23244 4.35228 4.38039 4.41798 4.61498 4.64470 4.77590 4.83457 4.90146 4.91407 4.95481 5.02481 5.11722 5.14198 5.19986 5.22776 5.30398 5.31086 5.42839 5.43999 5.56620 5.77518 5.80803 6.07517 6.23381 6.45414 6.69131 6.92346 8.13940 8.43850 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.004274 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.336182 B = 6550.031432 C = 8518.841599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.121 4.121 4 C 0.051 3.949 5 O -0.328 6.328 6 C 0.159 3.841 7 C -0.212 4.212 8 C -0.038 4.038 9 C -0.188 4.188 10 C 0.118 3.882 11 F -0.149 7.149 12 C -0.139 4.139 13 C 0.021 3.979 14 C -0.283 4.283 15 C 0.106 3.894 16 N -0.516 5.516 17 C 0.228 3.772 18 C -0.473 4.473 19 H 0.084 0.916 20 C 0.024 3.976 21 N -0.757 5.757 22 Si 0.990 3.010 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.257 1.257 26 C -0.273 4.273 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.184 0.816 38 H 0.162 0.838 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.280 0.720 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -20.424 1.838 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.159 4.159 4 C -0.023 4.023 5 O -0.241 6.241 6 C 0.112 3.888 7 C -0.231 4.231 8 C -0.056 4.056 9 C -0.207 4.207 10 C 0.099 3.901 11 F -0.127 7.127 12 C -0.141 4.141 13 C 0.015 3.985 14 C -0.306 4.306 15 C -0.058 4.058 16 N -0.230 5.230 17 C 0.103 3.897 18 C -0.504 4.504 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.379 5.379 22 Si 0.809 3.191 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.180 1.180 26 C -0.296 4.296 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.187 0.813 37 H 0.202 0.798 38 H 0.180 0.820 39 H 0.131 0.869 40 H 0.158 0.842 41 H 0.091 0.909 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.072 -19.366 1.914 19.701 hybrid contribution 0.383 0.481 -0.406 0.737 sum 3.455 -18.885 1.508 19.258 Atomic orbital electron populations 1.21781 0.95308 1.02457 1.01694 1.21391 0.96330 0.93657 1.03470 1.21607 0.92524 0.99208 1.02560 1.23184 0.95689 0.80403 1.03024 1.86198 1.18617 1.31605 1.87682 1.18817 0.83469 0.92089 0.94398 1.21609 0.94385 0.98201 1.08861 1.21292 0.94350 0.96867 0.93083 1.21303 1.01025 0.90962 1.07418 1.17870 0.90147 0.80308 1.01814 1.91470 1.86407 1.41082 1.93757 1.18359 0.91902 0.92341 1.11484 1.18505 0.94237 0.92142 0.93661 1.21444 1.05801 1.03099 1.00277 1.22861 0.95546 0.90879 0.96485 1.68678 1.24056 1.29337 1.00942 1.18919 0.88130 0.90768 0.91899 1.19949 1.21090 1.07516 1.01879 0.89772 1.27015 0.93337 0.99549 0.99791 1.70233 1.14944 1.24476 1.28221 0.85114 0.79925 0.76772 0.77284 1.18464 1.18828 1.18048 1.21813 1.07275 1.00539 0.99941 0.91007 0.92999 0.93336 0.90575 0.90207 0.92051 0.92762 0.90270 0.89693 0.81290 0.79848 0.82023 0.86941 0.84205 0.90946 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.91 71.98 0.71 -1.57 16 2 C -0.11 -1.60 5.93 30.59 0.18 -1.42 16 3 C -0.12 -2.62 5.58 30.60 0.17 -2.45 16 4 C 0.05 1.11 4.74 71.98 0.34 1.45 16 5 O -0.33 -11.13 9.38 -91.47 -0.86 -11.99 16 6 C 0.16 5.24 6.67 22.74 0.15 5.40 16 7 C -0.21 -4.68 9.03 22.34 0.20 -4.48 16 8 C -0.04 -0.72 10.03 22.28 0.22 -0.49 16 9 C -0.19 -4.71 10.01 22.30 0.22 -4.49 16 10 C 0.12 4.31 7.24 22.59 0.16 4.47 16 11 F -0.15 -6.22 16.69 44.97 0.75 -5.47 16 12 C -0.14 -5.67 5.39 -19.92 -0.11 -5.78 16 13 C 0.02 1.06 4.64 -19.89 -0.09 0.96 16 14 C -0.28 -14.06 9.62 22.77 0.22 -13.84 16 15 C 0.11 5.65 11.17 84.79 0.95 6.60 16 16 N -0.52 -31.37 7.85 -189.40 -1.49 -32.86 16 17 C 0.23 13.89 6.55 40.19 0.26 14.16 16 18 C -0.47 -27.90 9.14 23.49 0.21 -27.68 16 19 H 0.08 4.69 7.85 -2.91 -0.02 4.67 16 20 C 0.02 1.33 5.50 85.29 0.47 1.80 16 21 N -0.76 -43.21 11.46 21.84 0.25 -42.96 16 22 Si 0.99 40.33 29.56 68.60 2.03 42.36 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 C -0.27 -15.30 9.42 23.08 0.22 -15.09 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.39 7.66 -2.39 -0.02 1.37 16 35 H 0.08 1.40 7.66 -2.39 -0.02 1.38 16 36 H 0.17 2.38 6.29 -2.91 -0.02 2.37 16 37 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.14 6.55 8.06 -2.91 -0.02 6.53 16 41 H 0.28 14.32 8.29 -92.71 -0.77 13.55 16 42 H 0.09 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -76.39 361.86 6.21 -70.18 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 1.02 Total: 23.18 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.50 Total: -42.45 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -1.24 Total: -75.81 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.86 Total: -11.99 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.75 Total: -5.47 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -76.39 6.21 -70.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243269541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.821 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds