Wall clock time and date at job start Tue Mar 31 2020 11:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47373 * 2 1 4 4 C 1.52998 * 109.46886 * 179.97438 * 3 2 1 5 5 O 1.42910 * 109.46751 * 180.02562 * 4 3 2 6 6 C 1.35837 * 116.99839 * 180.02562 * 5 4 3 7 7 C 1.38591 * 120.10727 * 359.97024 * 6 5 4 8 8 C 1.38196 * 120.11397 * 180.02562 * 7 6 5 9 9 C 1.38338 * 120.33065 * 359.97438 * 8 7 6 10 10 C 1.38251 * 120.20759 * 359.76405 * 9 8 7 11 11 F 1.35102 * 120.06061 * 180.28131 * 10 9 8 12 12 C 1.39507 * 119.88220 * 0.50807 * 10 9 8 13 13 C 1.48325 * 120.16282 * 179.74481 * 12 10 9 14 14 C 1.39748 * 120.41440 * 244.72741 * 13 12 10 15 15 N 1.31905 * 121.14543 * 180.02562 * 14 13 12 16 16 C 1.31525 * 122.12420 * 359.97438 * 15 14 13 17 17 C 1.40776 * 120.67206 * 0.27558 * 16 15 14 18 18 C 1.41437 * 120.60479 * 179.72464 * 17 16 15 19 19 H 1.08002 * 120.00237 * 150.40635 * 18 17 16 20 20 C 1.39931 * 120.00048 * 330.40748 * 18 17 16 21 21 N 1.30827 * 120.00307 * 161.77822 * 20 18 17 22 22 Si 1.86804 * 119.99750 * 341.77584 * 20 18 17 23 23 H 1.48502 * 109.46848 * 95.40722 * 22 20 18 24 24 H 1.48503 * 109.47031 * 215.40515 * 22 20 18 25 25 H 1.48497 * 109.47494 * 335.40890 * 22 20 18 26 26 C 1.39165 * 120.41305 * 64.75164 * 13 12 10 27 27 H 1.09007 * 109.46781 * 59.99745 * 1 2 3 28 28 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47276 * 300.00226 * 1 2 3 30 30 H 1.09001 * 109.47276 * 239.99774 * 2 1 3 31 31 H 1.09000 * 109.47138 * 120.00180 * 2 1 3 32 32 H 1.09005 * 109.46647 * 59.99779 * 3 2 1 33 33 H 1.08996 * 109.46943 * 299.99709 * 3 2 1 34 34 H 1.09001 * 109.47357 * 60.00022 * 4 3 2 35 35 H 1.08996 * 109.47254 * 299.99716 * 4 3 2 36 36 H 1.07997 * 119.94303 * 0.05025 * 7 6 5 37 37 H 1.08011 * 119.83467 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.89610 * 180.02562 * 9 8 7 39 39 H 1.07998 * 119.43156 * 0.02562 * 14 13 12 40 40 H 1.07995 * 119.66909 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00171 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.95501 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.3931 2.9677 0.0013 7 6 6.2393 1.8701 0.0015 8 6 7.6094 2.0510 0.0021 9 6 8.1457 3.3261 0.0020 10 6 7.3141 4.4305 -0.0036 11 9 7.8411 5.6745 -0.0093 12 6 5.9297 4.2582 0.0016 13 6 5.0317 5.4387 0.0013 14 6 4.1975 5.6932 1.0933 15 7 3.3930 6.7384 1.1081 16 6 3.3330 7.5891 0.1068 17 6 4.1335 7.4093 -1.0372 18 6 4.0636 8.3219 -2.1155 19 1 4.9316 8.4934 -2.7349 20 6 2.8699 9.0024 -2.3800 21 7 2.8823 10.0824 -3.1183 22 14 1.2585 8.3688 -1.6788 23 1 0.9580 9.0786 -0.4095 24 1 0.1648 8.6127 -2.6533 25 1 1.3718 6.9117 -1.4162 26 6 5.0090 6.3063 -1.0865 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9284 -0.8891 35 1 3.9329 0.9287 0.8908 36 1 5.8274 0.8718 0.0007 37 1 8.2647 1.1924 0.0026 38 1 9.2174 3.4593 0.0021 39 1 4.2118 5.0226 1.9397 40 1 2.6600 8.4320 0.1610 41 1 2.0548 10.5543 -3.3013 42 1 5.6415 6.1371 -1.9454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243271357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:27 Heat of formation + Delta-G solvation = -50.494818 kcal Electronic energy + Delta-G solvation = -25629.015001 eV Core-core repulsion = 21873.756835 eV Total energy + Delta-G solvation = -3755.258166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.57552 -40.14342 -38.44323 -37.31190 -35.20815 -33.93230 -32.59452 -31.12322 -30.08262 -29.35547 -28.35326 -25.50805 -24.30538 -23.45032 -21.98056 -21.57499 -21.15708 -20.63518 -18.36075 -17.54383 -16.57869 -16.46441 -16.18436 -15.80130 -15.65531 -15.40247 -14.96984 -14.74798 -14.52236 -14.44631 -13.82410 -13.64744 -13.00955 -12.95680 -12.83566 -12.55188 -12.38094 -12.09996 -11.82924 -11.79769 -11.66089 -11.62880 -11.31606 -11.11207 -11.04078 -10.96241 -10.86242 -10.63849 -10.46123 -9.99195 -9.37742 -8.88743 -8.37841 -8.20246 -8.07574 -7.58029 -7.02980 -4.57953 1.17412 1.35839 2.39372 2.59802 3.09077 3.11271 3.19376 3.30198 3.66377 3.93116 4.44832 4.48961 4.64505 4.67380 4.83431 4.85489 4.93175 5.02187 5.07884 5.11598 5.32091 5.34089 5.42673 5.44732 5.57708 5.58133 5.68797 5.82807 5.91038 5.98972 6.00832 6.12053 6.17155 6.21881 6.28609 6.32595 6.33678 6.67017 6.82239 6.88579 7.14056 7.39486 7.46542 7.49018 7.88748 8.19687 8.44106 8.64266 9.41639 9.98428 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.005216 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.380824 B = 5366.658611 C = 7762.878738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.122 4.122 4 C 0.058 3.942 5 O -0.293 6.293 6 C 0.169 3.831 7 C -0.225 4.225 8 C -0.060 4.060 9 C -0.195 4.195 10 C 0.147 3.853 11 F -0.125 7.125 12 C -0.090 4.090 13 C -0.062 4.062 14 C -0.005 4.005 15 N -0.457 5.457 16 C -0.025 4.025 17 C 0.046 3.954 18 C -0.436 4.436 19 H 0.094 0.906 20 C 0.086 3.914 21 N -0.800 5.800 22 Si 0.905 3.095 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.246 1.246 26 C -0.152 4.152 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.288 0.712 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -19.155 4.214 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.160 4.160 4 C -0.017 4.017 5 O -0.205 6.205 6 C 0.122 3.878 7 C -0.244 4.244 8 C -0.078 4.078 9 C -0.214 4.214 10 C 0.127 3.873 11 F -0.104 7.104 12 C -0.092 4.092 13 C -0.065 4.065 14 C -0.163 4.163 15 N -0.164 5.164 16 C -0.186 4.186 17 C 0.041 3.959 18 C -0.465 4.465 19 H 0.112 0.888 20 C -0.134 4.134 21 N -0.423 5.423 22 Si 0.731 3.269 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.169 1.169 26 C -0.178 4.178 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.098 0.902 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.264 -18.595 4.772 19.239 hybrid contribution 0.080 -0.246 -0.645 0.695 sum 1.345 -18.840 4.127 19.334 Atomic orbital electron populations 1.21754 0.95239 1.01642 1.02352 1.21416 0.96440 0.95665 1.02124 1.21589 0.92502 0.97528 1.04363 1.22866 0.95635 0.82100 1.01110 1.86230 1.18179 1.28554 1.87581 1.18654 0.82860 0.92177 0.94092 1.21161 0.94222 0.97911 1.11080 1.20670 0.94214 0.96311 0.96644 1.20920 1.00098 0.91538 1.08883 1.17413 0.90056 0.79920 0.99876 1.91539 1.86262 1.39271 1.93298 1.18195 0.91388 0.92134 1.07496 1.18979 0.97314 0.93507 0.96654 1.21691 0.98708 0.98123 0.97766 1.66943 1.18236 1.02698 1.28525 1.22541 1.04956 1.00155 0.90927 1.18522 0.92163 0.91521 0.93714 1.19415 0.98995 1.16842 1.11262 0.88822 1.26130 1.01693 0.92471 0.93133 1.69679 1.30779 1.12238 1.29646 0.86408 0.79642 0.82437 0.78390 1.18969 1.21332 1.16936 1.21372 1.04016 0.94953 0.97461 0.92446 0.92627 0.92453 0.91810 0.91815 0.90526 0.90562 0.92114 0.92092 0.85123 0.85102 0.84796 0.85954 0.85259 0.90181 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -1.31 5.58 -26.73 -0.15 -1.46 16 4 C 0.06 0.66 4.74 37.16 0.18 0.84 16 5 O -0.29 -4.79 9.35 -19.23 -0.18 -4.97 16 6 C 0.17 2.72 6.66 -38.88 -0.26 2.46 16 7 C -0.22 -2.78 9.03 -39.47 -0.36 -3.13 16 8 C -0.06 -0.68 10.03 -39.56 -0.40 -1.07 16 9 C -0.20 -2.57 10.01 -39.54 -0.40 -2.97 16 10 C 0.15 2.52 7.24 -39.10 -0.28 2.23 16 11 F -0.13 -2.37 16.67 2.25 0.04 -2.34 16 12 C -0.09 -1.69 5.35 -104.70 -0.56 -2.25 16 13 C -0.06 -1.41 4.64 -104.84 -0.49 -1.89 16 14 C -0.01 -0.13 10.63 -16.96 -0.18 -0.31 16 15 N -0.46 -11.56 10.32 -12.27 -0.13 -11.69 16 16 C -0.02 -0.64 8.37 -16.72 -0.14 -0.78 16 17 C 0.05 1.20 5.11 -106.71 -0.55 0.65 16 18 C -0.44 -11.88 9.60 -37.73 -0.36 -12.25 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 20 C 0.09 2.25 5.41 -17.35 -0.09 2.15 16 21 N -0.80 -21.11 13.93 55.55 0.77 -20.34 16 22 Si 0.91 21.03 24.52 -169.99 -4.17 16.86 16 23 H -0.26 -5.99 6.71 56.52 0.38 -5.61 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.25 -6.02 6.85 56.52 0.39 -5.63 16 26 C -0.15 -3.73 9.47 -38.23 -0.36 -4.09 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 35 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 36 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 40 H 0.13 3.32 4.71 -52.49 -0.25 3.07 16 41 H 0.29 6.84 8.30 -40.82 -0.34 6.51 16 42 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -29.93 355.10 -8.12 -38.05 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.62 Total: 2.88 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -4.18 Total: -23.81 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.65 Total: -32.03 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.18 Total: -4.97 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.17 Total: 16.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.93 -8.12 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243271357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.448 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds