Wall clock time and date at job start Tue Mar 31 2020 11:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47373 * 2 1 4 4 C 1.52998 * 109.46886 * 179.97438 * 3 2 1 5 5 O 1.42910 * 109.46751 * 180.02562 * 4 3 2 6 6 C 1.35837 * 116.99839 * 180.02562 * 5 4 3 7 7 C 1.38591 * 120.10727 * 359.97024 * 6 5 4 8 8 C 1.38196 * 120.11397 * 180.02562 * 7 6 5 9 9 C 1.38338 * 120.33065 * 359.97438 * 8 7 6 10 10 C 1.38251 * 120.20759 * 359.76405 * 9 8 7 11 11 F 1.35102 * 120.06061 * 180.28131 * 10 9 8 12 12 C 1.39507 * 119.88220 * 0.50807 * 10 9 8 13 13 C 1.48325 * 120.16282 * 179.74481 * 12 10 9 14 14 C 1.39748 * 120.41440 * 244.72741 * 13 12 10 15 15 N 1.31905 * 121.14543 * 180.02562 * 14 13 12 16 16 C 1.31525 * 122.12420 * 359.97438 * 15 14 13 17 17 C 1.40776 * 120.67206 * 0.27558 * 16 15 14 18 18 C 1.41437 * 120.60479 * 179.72464 * 17 16 15 19 19 H 1.08002 * 120.00237 * 150.40635 * 18 17 16 20 20 C 1.39931 * 120.00048 * 330.40748 * 18 17 16 21 21 N 1.30827 * 120.00307 * 161.77822 * 20 18 17 22 22 Si 1.86804 * 119.99750 * 341.77584 * 20 18 17 23 23 H 1.48502 * 109.46848 * 95.40722 * 22 20 18 24 24 H 1.48503 * 109.47031 * 215.40515 * 22 20 18 25 25 H 1.48497 * 109.47494 * 335.40890 * 22 20 18 26 26 C 1.39165 * 120.41305 * 64.75164 * 13 12 10 27 27 H 1.09007 * 109.46781 * 59.99745 * 1 2 3 28 28 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47276 * 300.00226 * 1 2 3 30 30 H 1.09001 * 109.47276 * 239.99774 * 2 1 3 31 31 H 1.09000 * 109.47138 * 120.00180 * 2 1 3 32 32 H 1.09005 * 109.46647 * 59.99779 * 3 2 1 33 33 H 1.08996 * 109.46943 * 299.99709 * 3 2 1 34 34 H 1.09001 * 109.47357 * 60.00022 * 4 3 2 35 35 H 1.08996 * 109.47254 * 299.99716 * 4 3 2 36 36 H 1.07997 * 119.94303 * 0.05025 * 7 6 5 37 37 H 1.08011 * 119.83467 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.89610 * 180.02562 * 9 8 7 39 39 H 1.07998 * 119.43156 * 0.02562 * 14 13 12 40 40 H 1.07995 * 119.66909 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00171 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.95501 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.3931 2.9677 0.0013 7 6 6.2393 1.8701 0.0015 8 6 7.6094 2.0510 0.0021 9 6 8.1457 3.3261 0.0020 10 6 7.3141 4.4305 -0.0036 11 9 7.8411 5.6745 -0.0093 12 6 5.9297 4.2582 0.0016 13 6 5.0317 5.4387 0.0013 14 6 4.1975 5.6932 1.0933 15 7 3.3930 6.7384 1.1081 16 6 3.3330 7.5891 0.1068 17 6 4.1335 7.4093 -1.0372 18 6 4.0636 8.3219 -2.1155 19 1 4.9316 8.4934 -2.7349 20 6 2.8699 9.0024 -2.3800 21 7 2.8823 10.0824 -3.1183 22 14 1.2585 8.3688 -1.6788 23 1 0.9580 9.0786 -0.4095 24 1 0.1648 8.6127 -2.6533 25 1 1.3718 6.9117 -1.4162 26 6 5.0090 6.3063 -1.0865 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9284 -0.8891 35 1 3.9329 0.9287 0.8908 36 1 5.8274 0.8718 0.0007 37 1 8.2647 1.1924 0.0026 38 1 9.2174 3.4593 0.0021 39 1 4.2118 5.0226 1.9397 40 1 2.6600 8.4320 0.1610 41 1 2.0548 10.5543 -3.3013 42 1 5.6415 6.1371 -1.9454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243271357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:26 Heat of formation + Delta-G solvation = -66.994506 kcal Electronic energy + Delta-G solvation = -25629.730481 eV Core-core repulsion = 21873.756835 eV Total energy + Delta-G solvation = -3755.973646 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.92494 -41.33573 -40.25302 -38.39615 -35.99781 -35.90064 -34.13737 -33.09213 -31.05450 -30.51510 -29.59628 -27.50922 -25.23468 -24.88124 -23.46850 -22.74277 -22.59104 -21.82857 -19.75387 -19.17504 -18.09135 -17.75474 -17.43667 -17.12914 -16.97463 -16.77353 -16.67068 -16.29070 -15.59619 -15.51953 -15.14679 -14.91327 -14.58073 -14.40313 -14.03668 -13.88047 -13.75921 -13.62470 -13.38310 -13.07701 -12.87265 -12.82510 -12.71001 -12.68318 -12.24475 -11.99960 -11.91238 -11.80625 -11.77092 -11.45264 -11.32354 -10.55541 -10.15798 -9.91949 -9.49563 -9.14899 -9.03705 -6.66700 -0.03766 0.25500 0.56591 0.66579 1.20608 1.31546 1.39408 2.02831 2.08831 2.48013 2.59003 3.34523 3.35842 3.57616 3.83222 3.91192 3.91881 4.05166 4.05963 4.08425 4.22317 4.32001 4.35407 4.35665 4.40086 4.45100 4.62559 4.71556 4.81219 4.83456 4.91604 5.00740 5.02106 5.11534 5.17087 5.21379 5.23898 5.31023 5.32455 5.42704 5.48910 5.50399 5.76423 5.93150 6.06726 6.42164 6.44911 6.59404 7.43275 8.03806 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.005216 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.380824 B = 5366.658611 C = 7762.878738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.123 4.123 4 C 0.052 3.948 5 O -0.329 6.329 6 C 0.161 3.839 7 C -0.211 4.211 8 C -0.036 4.036 9 C -0.188 4.188 10 C 0.122 3.878 11 F -0.148 7.148 12 C -0.137 4.137 13 C -0.045 4.045 14 C -0.004 4.004 15 N -0.469 5.469 16 C -0.043 4.043 17 C 0.034 3.966 18 C -0.469 4.469 19 H 0.066 0.934 20 C 0.059 3.941 21 N -0.828 5.828 22 Si 0.956 3.044 23 H -0.255 1.255 24 H -0.261 1.261 25 H -0.269 1.269 26 C -0.169 4.169 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.169 0.831 37 H 0.183 0.817 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.300 0.700 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -23.441 5.244 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.160 4.160 4 C -0.022 4.022 5 O -0.242 6.242 6 C 0.114 3.886 7 C -0.229 4.229 8 C -0.054 4.054 9 C -0.207 4.207 10 C 0.102 3.898 11 F -0.126 7.126 12 C -0.140 4.140 13 C -0.047 4.047 14 C -0.162 4.162 15 N -0.176 5.176 16 C -0.203 4.203 17 C 0.030 3.970 18 C -0.498 4.498 19 H 0.084 0.916 20 C -0.158 4.158 21 N -0.453 5.453 22 Si 0.779 3.221 23 H -0.180 1.180 24 H -0.187 1.187 25 H -0.194 1.194 26 C -0.195 4.195 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.187 0.813 37 H 0.200 0.800 38 H 0.179 0.821 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.111 0.889 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.986 -22.860 5.790 23.665 hybrid contribution -0.005 0.837 -0.888 1.221 sum 1.982 -22.023 4.902 22.649 Atomic orbital electron populations 1.21786 0.95419 1.02435 1.01654 1.21389 0.96245 0.93716 1.03504 1.21618 0.92712 0.99178 1.02533 1.23181 0.95517 0.80357 1.03188 1.86185 1.18649 1.31687 1.87709 1.18790 0.83397 0.92095 0.94278 1.21602 0.94335 0.98268 1.08721 1.21297 0.94385 0.96883 0.92839 1.21303 1.01055 0.91002 1.07318 1.17823 0.90086 0.80277 1.01584 1.91479 1.86456 1.40978 1.93732 1.18172 0.91640 0.91897 1.12246 1.19257 0.96546 0.94045 0.94885 1.22192 0.97888 0.97502 0.98603 1.66950 1.19054 1.03290 1.28336 1.22519 1.05705 1.00804 0.91235 1.18637 0.92885 0.91927 0.93599 1.19377 0.99109 1.19047 1.12265 0.91556 1.26647 1.03539 0.92360 0.93270 1.69672 1.32227 1.12874 1.30549 0.85649 0.77294 0.80347 0.78777 1.17978 1.18671 1.19401 1.21550 1.04035 0.95403 0.98527 0.93364 0.91051 0.93040 0.90552 0.90168 0.92090 0.92770 0.90155 0.89518 0.81326 0.79999 0.82118 0.83655 0.85282 0.88897 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.11 -1.49 5.93 30.59 0.18 -1.31 16 3 C -0.12 -2.49 5.58 30.59 0.17 -2.32 16 4 C 0.05 1.02 4.74 71.98 0.34 1.36 16 5 O -0.33 -10.28 9.35 -91.72 -0.86 -11.13 16 6 C 0.16 4.83 6.66 22.72 0.15 4.98 16 7 C -0.21 -4.15 9.03 22.34 0.20 -3.95 16 8 C -0.04 -0.61 10.03 22.28 0.22 -0.38 16 9 C -0.19 -4.26 10.01 22.30 0.22 -4.04 16 10 C 0.12 4.06 7.24 22.58 0.16 4.22 16 11 F -0.15 -5.72 16.67 44.97 0.75 -4.97 16 12 C -0.14 -5.09 5.35 -19.92 -0.11 -5.20 16 13 C -0.05 -2.09 4.64 -20.00 -0.09 -2.18 16 14 C 0.00 -0.17 10.63 85.05 0.90 0.74 16 15 N -0.47 -24.20 10.32 -192.75 -1.99 -26.19 16 16 C -0.04 -2.32 8.37 85.36 0.71 -1.61 16 17 C 0.03 1.88 5.11 -21.22 -0.11 1.77 16 18 C -0.47 -27.14 9.60 23.47 0.23 -26.92 16 19 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 20 C 0.06 3.23 5.41 85.25 0.46 3.69 16 21 N -0.83 -45.06 13.93 21.82 0.30 -44.76 16 22 Si 0.96 44.42 24.52 68.60 1.68 46.10 16 23 H -0.25 -11.35 6.71 99.48 0.67 -10.68 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.27 -13.46 6.85 99.48 0.68 -12.77 16 26 C -0.17 -8.70 9.47 23.15 0.22 -8.48 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.26 7.66 -2.39 -0.02 1.25 16 35 H 0.09 1.26 7.66 -2.39 -0.02 1.24 16 36 H 0.17 2.03 6.29 -2.91 -0.02 2.02 16 37 H 0.18 1.30 8.06 -2.90 -0.02 1.27 16 38 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.15 6.07 8.06 -2.91 -0.02 6.04 16 40 H 0.13 6.83 4.71 -2.91 -0.01 6.81 16 41 H 0.30 14.50 8.30 -92.71 -0.77 13.73 16 42 H 0.11 5.40 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -70.14 355.10 5.44 -64.70 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.97 Total: 17.35 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 4.59 Total: -41.10 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -1.69 Total: -70.95 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.86 Total: -11.13 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.75 Total: -4.97 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.68 Total: 46.10 kcal Total: -70.14 5.44 -64.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243271357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.294 kcal (2) G-P(sol) polarization free energy of solvation -70.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds