Wall clock time and date at job start Tue Mar 31 2020 11:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47606 * 2 1 4 4 C 1.53002 * 109.47276 * 120.00440 * 2 1 3 5 5 O 1.42898 * 109.47050 * 64.99431 * 4 2 1 6 6 C 1.35853 * 117.00149 * 180.02562 * 5 4 2 7 7 C 1.38580 * 120.11388 * 0.02562 * 6 5 4 8 8 C 1.38194 * 120.05841 * 179.72282 * 7 6 5 9 9 C 1.38378 * 120.30517 * 0.27815 * 8 7 6 10 10 C 1.38005 * 120.24058 * 359.95634 * 9 8 7 11 11 C 1.39311 * 119.93121 * 0.02562 * 10 9 8 12 12 C 1.48326 * 120.14995 * 180.02562 * 11 10 9 13 13 C 1.39025 * 120.42274 * 64.72585 * 12 11 10 14 14 C 1.40946 * 118.12599 * 179.74172 * 13 12 11 15 15 C 1.41380 * 120.57094 * 180.26032 * 14 13 12 16 16 H 1.07998 * 119.99782 * 203.73000 * 15 14 13 17 17 C 1.39893 * 119.99890 * 23.72588 * 15 14 13 18 18 N 1.30866 * 119.99951 * 17.43612 * 17 15 14 19 19 Si 1.86799 * 120.00055 * 197.42404 * 17 15 14 20 20 H 1.48503 * 109.46502 * 94.69353 * 19 17 15 21 21 H 1.48495 * 109.47620 * 214.69231 * 19 17 15 22 22 H 1.48504 * 109.47067 * 334.69928 * 19 17 15 23 23 C 1.40806 * 118.85520 * 0.53158 * 14 13 12 24 24 N 1.31501 * 120.70199 * 359.72835 * 23 14 13 25 25 C 1.32146 * 122.08312 * 0.02562 * 24 23 14 26 26 F 1.35100 * 119.46249 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46734 * 299.99885 * 1 2 3 29 29 H 1.09001 * 109.46823 * 59.99213 * 1 2 3 30 30 H 1.09006 * 109.47057 * 240.00197 * 2 1 3 31 31 H 1.08991 * 109.47396 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47171 * 300.00730 * 3 2 1 33 33 H 1.09006 * 109.46752 * 60.00010 * 3 2 1 34 34 H 1.09000 * 109.46797 * 304.99556 * 4 2 1 35 35 H 1.09001 * 109.47341 * 184.99859 * 4 2 1 36 36 H 1.07997 * 119.97180 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.84523 * 180.25810 * 8 7 6 38 38 H 1.07998 * 119.88100 * 179.97438 * 9 8 7 39 39 H 1.08002 * 120.03810 * 180.02562 * 10 9 8 40 40 H 1.07999 * 120.93309 * 359.97438 * 13 12 11 41 41 H 0.97000 * 119.99634 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.64597 * 179.75150 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1919 6 6 2.0394 -2.8853 2.2328 7 6 2.7580 -2.3457 3.2877 8 6 3.1365 -3.1462 4.3487 9 6 2.8064 -4.4899 4.3621 10 6 2.0953 -5.0414 3.3158 11 6 1.7084 -4.2435 2.2414 12 6 0.9435 -4.8311 1.1146 13 6 -0.3370 -5.3327 1.3186 14 6 -1.0221 -5.8751 0.2127 15 6 -2.3287 -6.3944 0.3605 16 1 -2.7002 -7.1288 -0.3388 17 6 -3.1404 -5.9570 1.4126 18 7 -2.8495 -4.8499 2.0468 19 14 -4.6396 -6.9532 1.9120 20 1 -4.2795 -7.8631 3.0290 21 1 -5.7207 -6.0346 2.3508 22 1 -5.1103 -7.7540 0.7534 23 6 -0.3806 -5.8959 -1.0405 24 7 0.8346 -5.4136 -1.1809 25 6 1.5046 -4.8933 -0.1676 26 9 2.7509 -4.4132 -0.3716 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6055 -0.2618 2.1369 35 1 3.1264 -0.6445 1.2951 36 1 3.0182 -1.2975 3.2831 37 1 3.6928 -2.7211 5.1711 38 1 3.1061 -5.1093 5.1946 39 1 1.8391 -6.0905 3.3299 40 1 -0.7951 -5.3041 2.2962 41 1 -3.4121 -4.5468 2.7765 42 1 -0.8923 -6.3123 -1.8957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244055523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:01 Heat of formation + Delta-G solvation = -48.668771 kcal Electronic energy + Delta-G solvation = -26341.975864 eV Core-core repulsion = 22586.796881 eV Total energy + Delta-G solvation = -3755.178983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.41199 -39.86541 -38.19610 -37.28022 -35.02653 -34.11800 -32.44377 -30.29920 -29.72158 -28.35845 -27.07723 -26.37336 -25.45029 -23.14255 -21.96058 -21.55919 -20.72173 -19.87881 -17.94102 -17.29587 -16.51689 -16.02064 -15.93821 -15.58020 -15.36332 -14.86696 -14.48938 -14.24281 -14.17029 -13.76610 -13.57428 -13.07074 -12.92725 -12.45847 -12.35102 -12.30422 -12.15193 -11.99043 -11.90806 -11.70160 -11.43572 -11.25085 -11.15304 -11.12813 -10.95099 -10.90967 -10.66733 -10.46077 -10.43514 -10.01443 -9.44216 -8.75353 -8.36537 -8.20937 -7.75958 -7.39214 -6.95300 -4.55674 1.60327 1.81872 2.44213 2.74775 2.98231 3.01883 3.06824 3.52307 3.78501 4.13115 4.42240 4.82584 4.88335 5.08176 5.13228 5.17842 5.22556 5.34813 5.41240 5.43804 5.48045 5.57966 5.68040 5.73006 5.80751 5.89169 5.94960 6.00265 6.11221 6.16539 6.35671 6.37033 6.54285 6.58310 6.62600 6.69396 6.81231 6.90852 6.99058 7.04653 7.16503 7.54748 7.70354 7.81905 7.88135 8.29039 8.55223 8.55649 9.30996 9.96131 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.004862 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.064794 B = 5757.533316 C = 6277.915546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.064 3.936 5 O -0.292 6.292 6 C 0.148 3.852 7 C -0.215 4.215 8 C -0.091 4.091 9 C -0.162 4.162 10 C -0.070 4.070 11 C -0.047 4.047 12 C -0.090 4.090 13 C -0.097 4.097 14 C 0.055 3.945 15 C -0.444 4.444 16 H 0.087 0.913 17 C 0.074 3.926 18 N -0.784 5.784 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.259 1.259 23 C 0.008 3.992 24 N -0.493 5.493 25 C 0.178 3.822 26 F -0.145 7.145 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.285 0.715 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 7.340 4.716 10.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.011 4.011 5 O -0.205 6.205 6 C 0.102 3.898 7 C -0.234 4.234 8 C -0.109 4.109 9 C -0.180 4.180 10 C -0.088 4.088 11 C -0.048 4.048 12 C -0.094 4.094 13 C -0.122 4.122 14 C 0.051 3.949 15 C -0.473 4.473 16 H 0.105 0.895 17 C -0.146 4.146 18 N -0.408 5.408 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.153 4.153 24 N -0.205 5.205 25 C 0.024 3.976 26 F -0.125 7.125 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.096 0.904 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.896 7.479 3.904 10.293 hybrid contribution -0.770 0.014 1.240 1.460 sum 5.126 7.493 5.144 10.435 Atomic orbital electron populations 1.21798 0.94105 1.03299 1.01139 1.21099 0.97218 0.95312 0.97702 1.21767 1.00895 0.95156 1.02202 1.22837 0.98913 0.80520 0.98864 1.86216 1.73441 1.19893 1.40928 1.19007 0.93585 0.90224 0.86949 1.21070 1.05620 1.00418 0.96308 1.20813 0.99044 0.93779 0.97260 1.20877 1.02454 0.95331 0.99365 1.21076 0.96132 0.99483 0.92114 1.18119 1.00783 0.90048 0.95883 1.18913 0.95787 1.03605 0.91046 1.21691 0.90471 0.99981 1.00091 1.18457 0.94063 0.91299 0.91122 1.19542 0.96950 1.20777 1.10033 0.89512 1.25991 0.99700 0.93976 0.94910 1.69806 1.36879 1.16752 1.17381 0.86198 0.79905 0.80209 0.79953 1.19138 1.20118 1.18279 1.22258 0.90552 1.06090 0.96359 1.66260 1.10136 1.10609 1.33448 1.17495 0.82776 1.07465 0.89858 1.91391 1.38467 1.86727 1.95907 0.91176 0.93020 0.92774 0.89978 0.92589 0.91887 0.92568 0.92468 0.92533 0.85980 0.86421 0.86252 0.85451 0.84531 0.90379 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.09 37.16 0.34 -1.77 16 2 C -0.09 -1.28 3.16 -90.62 -0.29 -1.57 16 3 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 4 C 0.06 0.94 4.12 37.16 0.15 1.10 16 5 O -0.29 -5.76 8.90 -19.28 -0.17 -5.93 16 6 C 0.15 2.89 6.51 -38.87 -0.25 2.64 16 7 C -0.22 -3.43 9.03 -39.47 -0.36 -3.78 16 8 C -0.09 -1.31 10.03 -39.55 -0.40 -1.70 16 9 C -0.16 -2.45 10.03 -39.62 -0.40 -2.85 16 10 C -0.07 -1.27 9.73 -39.27 -0.38 -1.65 16 11 C -0.05 -0.99 5.03 -104.76 -0.53 -1.52 16 12 C -0.09 -2.17 4.94 -104.76 -0.52 -2.69 16 13 C -0.10 -2.44 8.50 -38.27 -0.33 -2.76 16 14 C 0.06 1.41 5.59 -106.71 -0.60 0.81 16 15 C -0.44 -10.90 9.08 -37.77 -0.34 -11.24 16 16 H 0.09 2.01 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.72 5.18 -17.34 -0.09 1.63 16 18 N -0.78 -19.05 10.92 55.54 0.61 -18.45 16 19 Si 0.91 17.40 29.59 -169.99 -5.03 12.37 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 23 C 0.01 0.21 10.96 -16.72 -0.18 0.02 16 24 N -0.49 -12.71 10.33 -12.58 -0.13 -12.84 16 25 C 0.18 4.52 8.12 -16.72 -0.14 4.39 16 26 F -0.15 -3.59 16.70 2.25 0.04 -3.55 16 27 H 0.07 1.26 7.82 -51.93 -0.41 0.86 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.76 7.66 -51.93 -0.40 0.37 16 35 H 0.06 0.74 7.67 -51.93 -0.40 0.35 16 36 H 0.12 1.61 6.30 -52.49 -0.33 1.28 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.14 3.49 6.20 -52.49 -0.33 3.16 16 41 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 42 H 0.14 3.04 8.06 -52.48 -0.42 2.62 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -28.52 358.99 -8.87 -37.39 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.63 Total: 7.64 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.96 Total: -22.04 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.48 Total: -31.29 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.17 Total: -5.93 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.52 -8.87 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244055523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.275 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds