Wall clock time and date at job start Tue Mar 31 2020 11:42:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47606 * 2 1
4 4 C 1.53002 * 109.47276 * 120.00440 * 2 1 3
5 5 O 1.42898 * 109.47050 * 64.99431 * 4 2 1
6 6 C 1.35853 * 117.00149 * 180.02562 * 5 4 2
7 7 C 1.38580 * 120.11388 * 0.02562 * 6 5 4
8 8 C 1.38194 * 120.05841 * 179.72282 * 7 6 5
9 9 C 1.38378 * 120.30517 * 0.27815 * 8 7 6
10 10 C 1.38005 * 120.24058 * 359.95634 * 9 8 7
11 11 C 1.39311 * 119.93121 * 0.02562 * 10 9 8
12 12 C 1.48326 * 120.14995 * 180.02562 * 11 10 9
13 13 C 1.39025 * 120.42274 * 64.72585 * 12 11 10
14 14 C 1.40946 * 118.12599 * 179.74172 * 13 12 11
15 15 C 1.41380 * 120.57094 * 180.26032 * 14 13 12
16 16 H 1.07998 * 119.99782 * 203.73000 * 15 14 13
17 17 C 1.39893 * 119.99890 * 23.72588 * 15 14 13
18 18 N 1.30866 * 119.99951 * 17.43612 * 17 15 14
19 19 Si 1.86799 * 120.00055 * 197.42404 * 17 15 14
20 20 H 1.48503 * 109.46502 * 94.69353 * 19 17 15
21 21 H 1.48495 * 109.47620 * 214.69231 * 19 17 15
22 22 H 1.48504 * 109.47067 * 334.69928 * 19 17 15
23 23 C 1.40806 * 118.85520 * 0.53158 * 14 13 12
24 24 N 1.31501 * 120.70199 * 359.72835 * 23 14 13
25 25 C 1.32146 * 122.08312 * 0.02562 * 24 23 14
26 26 F 1.35100 * 119.46249 * 179.97438 * 25 24 23
27 27 H 1.08997 * 109.47046 * 180.02562 * 1 2 3
28 28 H 1.08998 * 109.46734 * 299.99885 * 1 2 3
29 29 H 1.09001 * 109.46823 * 59.99213 * 1 2 3
30 30 H 1.09006 * 109.47057 * 240.00197 * 2 1 3
31 31 H 1.08991 * 109.47396 * 179.97438 * 3 2 1
32 32 H 1.08994 * 109.47171 * 300.00730 * 3 2 1
33 33 H 1.09006 * 109.46752 * 60.00010 * 3 2 1
34 34 H 1.09000 * 109.46797 * 304.99556 * 4 2 1
35 35 H 1.09001 * 109.47341 * 184.99859 * 4 2 1
36 36 H 1.07997 * 119.97180 * 0.02562 * 7 6 5
37 37 H 1.08001 * 119.84523 * 180.25810 * 8 7 6
38 38 H 1.07998 * 119.88100 * 179.97438 * 9 8 7
39 39 H 1.08002 * 120.03810 * 180.02562 * 10 9 8
40 40 H 1.07999 * 120.93309 * 359.97438 * 13 12 11
41 41 H 0.97000 * 119.99634 * 180.02562 * 18 17 15
42 42 H 1.08004 * 119.64597 * 179.75150 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 8 1.6619 -2.0982 1.1919
6 6 2.0394 -2.8853 2.2328
7 6 2.7580 -2.3457 3.2877
8 6 3.1365 -3.1462 4.3487
9 6 2.8064 -4.4899 4.3621
10 6 2.0953 -5.0414 3.3158
11 6 1.7084 -4.2435 2.2414
12 6 0.9435 -4.8311 1.1146
13 6 -0.3370 -5.3327 1.3186
14 6 -1.0221 -5.8751 0.2127
15 6 -2.3287 -6.3944 0.3605
16 1 -2.7002 -7.1288 -0.3388
17 6 -3.1404 -5.9570 1.4126
18 7 -2.8495 -4.8499 2.0468
19 14 -4.6396 -6.9532 1.9120
20 1 -4.2795 -7.8631 3.0290
21 1 -5.7207 -6.0346 2.3508
22 1 -5.1103 -7.7540 0.7534
23 6 -0.3806 -5.8959 -1.0405
24 7 0.8346 -5.4136 -1.1809
25 6 1.5046 -4.8933 -0.1676
26 9 2.7509 -4.4132 -0.3716
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5140 -0.8899
30 1 1.8933 -0.5138 -0.8900
31 1 3.1300 1.4424 0.0005
32 1 1.6767 1.9564 -0.8899
33 1 1.6768 1.9563 0.8900
34 1 1.6055 -0.2618 2.1369
35 1 3.1264 -0.6445 1.2951
36 1 3.0182 -1.2975 3.2831
37 1 3.6928 -2.7211 5.1711
38 1 3.1061 -5.1093 5.1946
39 1 1.8391 -6.0905 3.3299
40 1 -0.7951 -5.3041 2.2962
41 1 -3.4121 -4.5468 2.7765
42 1 -0.8923 -6.3123 -1.8957
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001244055523.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:01
Heat of formation + Delta-G solvation = -48.668771 kcal
Electronic energy + Delta-G solvation = -26341.975864 eV
Core-core repulsion = 22586.796881 eV
Total energy + Delta-G solvation = -3755.178983 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.138 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-47.41199 -39.86541 -38.19610 -37.28022 -35.02653 -34.11800 -32.44377 -30.29920
-29.72158 -28.35845 -27.07723 -26.37336 -25.45029 -23.14255 -21.96058 -21.55919
-20.72173 -19.87881 -17.94102 -17.29587 -16.51689 -16.02064 -15.93821 -15.58020
-15.36332 -14.86696 -14.48938 -14.24281 -14.17029 -13.76610 -13.57428 -13.07074
-12.92725 -12.45847 -12.35102 -12.30422 -12.15193 -11.99043 -11.90806 -11.70160
-11.43572 -11.25085 -11.15304 -11.12813 -10.95099 -10.90967 -10.66733 -10.46077
-10.43514 -10.01443 -9.44216 -8.75353 -8.36537 -8.20937 -7.75958 -7.39214
-6.95300 -4.55674 1.60327 1.81872 2.44213 2.74775 2.98231 3.01883
3.06824 3.52307 3.78501 4.13115 4.42240 4.82584 4.88335 5.08176
5.13228 5.17842 5.22556 5.34813 5.41240 5.43804 5.48045 5.57966
5.68040 5.73006 5.80751 5.89169 5.94960 6.00265 6.11221 6.16539
6.35671 6.37033 6.54285 6.58310 6.62600 6.69396 6.81231 6.90852
6.99058 7.04653 7.16503 7.54748 7.70354 7.81905 7.88135 8.29039
8.55223 8.55649 9.30996 9.96131
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.011121 B = 0.004862 C = 0.004459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2517.064794 B = 5757.533316 C = 6277.915546
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.095 4.095
3 C -0.143 4.143
4 C 0.064 3.936
5 O -0.292 6.292
6 C 0.148 3.852
7 C -0.215 4.215
8 C -0.091 4.091
9 C -0.162 4.162
10 C -0.070 4.070
11 C -0.047 4.047
12 C -0.090 4.090
13 C -0.097 4.097
14 C 0.055 3.945
15 C -0.444 4.444
16 H 0.087 0.913
17 C 0.074 3.926
18 N -0.784 5.784
19 Si 0.913 3.087
20 H -0.266 1.266
21 H -0.276 1.276
22 H -0.259 1.259
23 C 0.008 3.992
24 N -0.493 5.493
25 C 0.178 3.822
26 F -0.145 7.145
27 H 0.069 0.931
28 H 0.051 0.949
29 H 0.053 0.947
30 H 0.082 0.918
31 H 0.055 0.945
32 H 0.062 0.938
33 H 0.055 0.945
34 H 0.057 0.943
35 H 0.056 0.944
36 H 0.122 0.878
37 H 0.118 0.882
38 H 0.119 0.881
39 H 0.128 0.872
40 H 0.137 0.863
41 H 0.285 0.715
42 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.652 7.340 4.716 10.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.113 4.113
3 C -0.200 4.200
4 C -0.011 4.011
5 O -0.205 6.205
6 C 0.102 3.898
7 C -0.234 4.234
8 C -0.109 4.109
9 C -0.180 4.180
10 C -0.088 4.088
11 C -0.048 4.048
12 C -0.094 4.094
13 C -0.122 4.122
14 C 0.051 3.949
15 C -0.473 4.473
16 H 0.105 0.895
17 C -0.146 4.146
18 N -0.408 5.408
19 Si 0.737 3.263
20 H -0.191 1.191
21 H -0.201 1.201
22 H -0.183 1.183
23 C -0.153 4.153
24 N -0.205 5.205
25 C 0.024 3.976
26 F -0.125 7.125
27 H 0.088 0.912
28 H 0.070 0.930
29 H 0.072 0.928
30 H 0.100 0.900
31 H 0.074 0.926
32 H 0.081 0.919
33 H 0.074 0.926
34 H 0.075 0.925
35 H 0.075 0.925
36 H 0.140 0.860
37 H 0.136 0.864
38 H 0.137 0.863
39 H 0.145 0.855
40 H 0.155 0.845
41 H 0.096 0.904
42 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 5.896 7.479 3.904 10.293
hybrid contribution -0.770 0.014 1.240 1.460
sum 5.126 7.493 5.144 10.435
Atomic orbital electron populations
1.21798 0.94105 1.03299 1.01139 1.21099 0.97218 0.95312 0.97702
1.21767 1.00895 0.95156 1.02202 1.22837 0.98913 0.80520 0.98864
1.86216 1.73441 1.19893 1.40928 1.19007 0.93585 0.90224 0.86949
1.21070 1.05620 1.00418 0.96308 1.20813 0.99044 0.93779 0.97260
1.20877 1.02454 0.95331 0.99365 1.21076 0.96132 0.99483 0.92114
1.18119 1.00783 0.90048 0.95883 1.18913 0.95787 1.03605 0.91046
1.21691 0.90471 0.99981 1.00091 1.18457 0.94063 0.91299 0.91122
1.19542 0.96950 1.20777 1.10033 0.89512 1.25991 0.99700 0.93976
0.94910 1.69806 1.36879 1.16752 1.17381 0.86198 0.79905 0.80209
0.79953 1.19138 1.20118 1.18279 1.22258 0.90552 1.06090 0.96359
1.66260 1.10136 1.10609 1.33448 1.17495 0.82776 1.07465 0.89858
1.91391 1.38467 1.86727 1.95907 0.91176 0.93020 0.92774 0.89978
0.92589 0.91887 0.92568 0.92468 0.92533 0.85980 0.86421 0.86252
0.85451 0.84531 0.90379 0.84619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.11 9.09 37.16 0.34 -1.77 16
2 C -0.09 -1.28 3.16 -90.62 -0.29 -1.57 16
3 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16
4 C 0.06 0.94 4.12 37.16 0.15 1.10 16
5 O -0.29 -5.76 8.90 -19.28 -0.17 -5.93 16
6 C 0.15 2.89 6.51 -38.87 -0.25 2.64 16
7 C -0.22 -3.43 9.03 -39.47 -0.36 -3.78 16
8 C -0.09 -1.31 10.03 -39.55 -0.40 -1.70 16
9 C -0.16 -2.45 10.03 -39.62 -0.40 -2.85 16
10 C -0.07 -1.27 9.73 -39.27 -0.38 -1.65 16
11 C -0.05 -0.99 5.03 -104.76 -0.53 -1.52 16
12 C -0.09 -2.17 4.94 -104.76 -0.52 -2.69 16
13 C -0.10 -2.44 8.50 -38.27 -0.33 -2.76 16
14 C 0.06 1.41 5.59 -106.71 -0.60 0.81 16
15 C -0.44 -10.90 9.08 -37.77 -0.34 -11.24 16
16 H 0.09 2.01 7.90 -52.49 -0.41 1.59 16
17 C 0.07 1.72 5.18 -17.34 -0.09 1.63 16
18 N -0.78 -19.05 10.92 55.54 0.61 -18.45 16
19 Si 0.91 17.40 29.59 -169.99 -5.03 12.37 16
20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16
21 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16
22 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16
23 C 0.01 0.21 10.96 -16.72 -0.18 0.02 16
24 N -0.49 -12.71 10.33 -12.58 -0.13 -12.84 16
25 C 0.18 4.52 8.12 -16.72 -0.14 4.39 16
26 F -0.15 -3.59 16.70 2.25 0.04 -3.55 16
27 H 0.07 1.26 7.82 -51.93 -0.41 0.86 16
28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16
31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.06 0.76 7.66 -51.93 -0.40 0.37 16
35 H 0.06 0.74 7.67 -51.93 -0.40 0.35 16
36 H 0.12 1.61 6.30 -52.49 -0.33 1.28 16
37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16
38 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16
39 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16
40 H 0.14 3.49 6.20 -52.49 -0.33 3.16 16
41 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16
42 H 0.14 3.04 8.06 -52.48 -0.42 2.62 16
LS Contribution 358.99 15.07 5.41 5.41
Total: -1.00 -28.52 358.99 -8.87 -37.39
By element:
Atomic # 1 Polarization: 13.28 SS G_CDS: -5.63 Total: 7.64 kcal
Atomic # 6 Polarization: -18.09 SS G_CDS: -3.96 Total: -22.04 kcal
Atomic # 7 Polarization: -31.77 SS G_CDS: 0.48 Total: -31.29 kcal
Atomic # 8 Polarization: -5.76 SS G_CDS: -0.17 Total: -5.93 kcal
Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal
Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -28.52 -8.87 -37.39 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001244055523.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.275 kcal
(2) G-P(sol) polarization free energy of solvation -28.523 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.799 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds