Wall clock time and date at job start Tue Mar 31 2020 11:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47606 * 2 1 4 4 C 1.53002 * 109.47276 * 120.00440 * 2 1 3 5 5 O 1.42898 * 109.47050 * 64.99431 * 4 2 1 6 6 C 1.35853 * 117.00149 * 180.02562 * 5 4 2 7 7 C 1.38580 * 120.11388 * 0.02562 * 6 5 4 8 8 C 1.38194 * 120.05841 * 179.72282 * 7 6 5 9 9 C 1.38378 * 120.30517 * 0.27815 * 8 7 6 10 10 C 1.38005 * 120.24058 * 359.95634 * 9 8 7 11 11 C 1.39311 * 119.93121 * 0.02562 * 10 9 8 12 12 C 1.48326 * 120.14995 * 180.02562 * 11 10 9 13 13 C 1.39025 * 120.42274 * 64.72585 * 12 11 10 14 14 C 1.40946 * 118.12599 * 179.74172 * 13 12 11 15 15 C 1.41380 * 120.57094 * 180.26032 * 14 13 12 16 16 H 1.07998 * 119.99782 * 203.73000 * 15 14 13 17 17 C 1.39893 * 119.99890 * 23.72588 * 15 14 13 18 18 N 1.30866 * 119.99951 * 17.43612 * 17 15 14 19 19 Si 1.86799 * 120.00055 * 197.42404 * 17 15 14 20 20 H 1.48503 * 109.46502 * 94.69353 * 19 17 15 21 21 H 1.48495 * 109.47620 * 214.69231 * 19 17 15 22 22 H 1.48504 * 109.47067 * 334.69928 * 19 17 15 23 23 C 1.40806 * 118.85520 * 0.53158 * 14 13 12 24 24 N 1.31501 * 120.70199 * 359.72835 * 23 14 13 25 25 C 1.32146 * 122.08312 * 0.02562 * 24 23 14 26 26 F 1.35100 * 119.46249 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46734 * 299.99885 * 1 2 3 29 29 H 1.09001 * 109.46823 * 59.99213 * 1 2 3 30 30 H 1.09006 * 109.47057 * 240.00197 * 2 1 3 31 31 H 1.08991 * 109.47396 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47171 * 300.00730 * 3 2 1 33 33 H 1.09006 * 109.46752 * 60.00010 * 3 2 1 34 34 H 1.09000 * 109.46797 * 304.99556 * 4 2 1 35 35 H 1.09001 * 109.47341 * 184.99859 * 4 2 1 36 36 H 1.07997 * 119.97180 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.84523 * 180.25810 * 8 7 6 38 38 H 1.07998 * 119.88100 * 179.97438 * 9 8 7 39 39 H 1.08002 * 120.03810 * 180.02562 * 10 9 8 40 40 H 1.07999 * 120.93309 * 359.97438 * 13 12 11 41 41 H 0.97000 * 119.99634 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.64597 * 179.75150 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1919 6 6 2.0394 -2.8853 2.2328 7 6 2.7580 -2.3457 3.2877 8 6 3.1365 -3.1462 4.3487 9 6 2.8064 -4.4899 4.3621 10 6 2.0953 -5.0414 3.3158 11 6 1.7084 -4.2435 2.2414 12 6 0.9435 -4.8311 1.1146 13 6 -0.3370 -5.3327 1.3186 14 6 -1.0221 -5.8751 0.2127 15 6 -2.3287 -6.3944 0.3605 16 1 -2.7002 -7.1288 -0.3388 17 6 -3.1404 -5.9570 1.4126 18 7 -2.8495 -4.8499 2.0468 19 14 -4.6396 -6.9532 1.9120 20 1 -4.2795 -7.8631 3.0290 21 1 -5.7207 -6.0346 2.3508 22 1 -5.1103 -7.7540 0.7534 23 6 -0.3806 -5.8959 -1.0405 24 7 0.8346 -5.4136 -1.1809 25 6 1.5046 -4.8933 -0.1676 26 9 2.7509 -4.4132 -0.3716 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6055 -0.2618 2.1369 35 1 3.1264 -0.6445 1.2951 36 1 3.0182 -1.2975 3.2831 37 1 3.6928 -2.7211 5.1711 38 1 3.1061 -5.1093 5.1946 39 1 1.8391 -6.0905 3.3299 40 1 -0.7951 -5.3041 2.2962 41 1 -3.4121 -4.5468 2.7765 42 1 -0.8923 -6.3123 -1.8957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244055523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:00 Heat of formation + Delta-G solvation = -62.410266 kcal Electronic energy + Delta-G solvation = -26342.571740 eV Core-core repulsion = 22586.796881 eV Total energy + Delta-G solvation = -3755.774859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.36067 -41.22455 -40.00395 -38.58869 -36.15533 -35.99308 -34.04861 -32.19755 -31.02685 -29.91767 -28.12340 -27.49964 -27.35233 -24.75358 -23.67224 -23.00505 -22.27517 -21.05955 -19.48992 -18.87581 -18.45324 -17.76040 -17.30586 -17.05992 -16.77742 -16.47356 -16.29296 -15.50227 -15.37745 -15.19379 -14.94024 -14.66127 -14.21871 -14.10629 -13.99345 -13.75625 -13.64555 -13.52356 -13.33037 -13.06832 -13.03470 -12.85809 -12.55168 -12.39869 -12.22873 -12.10953 -12.07853 -11.78685 -11.58573 -11.50896 -11.23555 -10.40269 -10.30091 -9.79730 -9.46761 -8.94875 -8.76996 -6.49146 0.17874 0.50462 0.67470 0.86773 1.40498 1.49655 1.55479 2.16942 2.30878 2.56928 2.82844 3.31206 3.48781 3.71932 3.77650 3.81909 4.01743 4.07084 4.15588 4.23157 4.30859 4.44349 4.50696 4.50886 4.61458 4.64879 4.70367 4.76732 4.89889 4.94769 4.95995 4.96642 5.11878 5.13969 5.15756 5.29842 5.35979 5.40994 5.46819 5.57002 5.64463 5.74889 5.92399 5.94834 6.36967 6.58022 6.64045 6.66057 7.34830 8.17360 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.004862 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.064794 B = 5757.533316 C = 6277.915546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.134 4.134 4 C 0.057 3.943 5 O -0.329 6.329 6 C 0.127 3.873 7 C -0.213 4.213 8 C -0.076 4.076 9 C -0.156 4.156 10 C -0.082 4.082 11 C -0.097 4.097 12 C -0.074 4.074 13 C -0.119 4.119 14 C 0.037 3.963 15 C -0.463 4.463 16 H 0.097 0.903 17 C 0.036 3.964 18 N -0.810 5.810 19 Si 0.991 3.009 20 H -0.260 1.260 21 H -0.268 1.268 22 H -0.252 1.252 23 C -0.009 4.009 24 N -0.506 5.506 25 C 0.147 3.853 26 F -0.147 7.147 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.295 0.705 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 8.506 7.195 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.191 4.191 4 C -0.018 4.018 5 O -0.243 6.243 6 C 0.081 3.919 7 C -0.231 4.231 8 C -0.094 4.094 9 C -0.174 4.174 10 C -0.101 4.101 11 C -0.098 4.098 12 C -0.078 4.078 13 C -0.144 4.144 14 C 0.032 3.968 15 C -0.491 4.491 16 H 0.115 0.885 17 C -0.181 4.181 18 N -0.434 5.434 19 Si 0.810 3.190 20 H -0.185 1.185 21 H -0.193 1.193 22 H -0.175 1.175 23 C -0.170 4.170 24 N -0.218 5.218 25 C -0.006 4.006 26 F -0.127 7.127 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.174 0.826 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.135 8.661 6.376 12.381 hybrid contribution -0.827 -0.280 0.531 1.023 sum 5.307 8.381 6.907 12.088 Atomic orbital electron populations 1.21751 0.95235 1.00441 1.02501 1.21146 0.96258 0.97477 0.96449 1.21713 1.01667 0.92286 1.03401 1.23142 1.00133 0.78572 0.99905 1.86182 1.74227 1.22081 1.41804 1.19249 0.94644 0.89825 0.88140 1.21448 1.04242 1.02097 0.95331 1.21383 0.97331 0.93153 0.97492 1.21286 1.00762 0.96340 0.98980 1.21213 0.96987 0.99377 0.92486 1.18272 1.03423 0.91729 0.96388 1.19135 0.95384 1.01496 0.91771 1.21646 0.91228 1.01928 0.99640 1.18798 0.94940 0.91517 0.91507 1.19901 0.96927 1.21069 1.11247 0.88533 1.26927 1.02640 0.94555 0.94022 1.69868 1.38142 1.17923 1.17510 0.85044 0.75720 0.78486 0.79704 1.18457 1.19305 1.17516 1.22531 0.90599 1.06937 0.96983 1.66207 1.10596 1.10890 1.34137 1.17730 0.83131 1.09076 0.90666 1.91356 1.38473 1.86909 1.95962 0.96000 0.91665 0.91384 0.92277 0.91298 0.90962 0.91096 0.90899 0.90783 0.83022 0.81791 0.82637 0.85788 0.85459 0.89444 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.09 71.98 0.65 -3.57 16 2 C -0.09 -2.56 3.16 -10.79 -0.03 -2.59 16 3 C -0.13 -2.39 9.19 71.98 0.66 -1.73 16 4 C 0.06 1.64 4.12 71.98 0.30 1.94 16 5 O -0.33 -13.46 8.90 -91.90 -0.82 -14.27 16 6 C 0.13 5.01 6.51 22.73 0.15 5.16 16 7 C -0.21 -6.26 9.03 22.34 0.20 -6.06 16 8 C -0.08 -1.89 10.03 22.29 0.22 -1.66 16 9 C -0.16 -4.30 10.03 22.25 0.22 -4.07 16 10 C -0.08 -3.01 9.73 22.47 0.22 -2.79 16 11 C -0.10 -4.24 5.03 -19.96 -0.10 -4.34 16 12 C -0.07 -3.81 4.94 -19.95 -0.10 -3.91 16 13 C -0.12 -6.34 8.50 23.12 0.20 -6.14 16 14 C 0.04 1.98 5.59 -21.21 -0.12 1.87 16 15 C -0.46 -23.32 9.08 23.44 0.21 -23.10 16 16 H 0.10 4.53 7.90 -2.91 -0.02 4.50 16 17 C 0.04 1.69 5.18 85.24 0.44 2.13 16 18 N -0.81 -40.17 10.92 21.82 0.24 -39.94 16 19 Si 0.99 35.09 29.59 68.60 2.03 37.12 16 20 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 21 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 22 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 23 C -0.01 -0.49 10.96 85.37 0.94 0.45 16 24 N -0.51 -27.63 10.33 -193.71 -2.00 -29.64 16 25 C 0.15 7.94 8.12 85.10 0.69 8.63 16 26 F -0.15 -7.70 16.70 44.97 0.75 -6.94 16 27 H 0.02 0.83 7.82 -2.39 -0.02 0.81 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 35 H 0.07 1.83 7.67 -2.39 -0.02 1.81 16 36 H 0.15 3.45 6.30 -2.91 -0.02 3.43 16 37 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.13 6.90 6.20 -2.91 -0.02 6.88 16 41 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 42 H 0.15 7.18 8.06 -2.91 -0.02 7.16 16 Total: -1.00 -66.63 358.99 5.98 -60.65 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 1.03 Total: 32.81 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 4.75 Total: -39.79 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.76 Total: -69.57 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.82 Total: -14.27 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.75 Total: -6.94 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -66.63 5.98 -60.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244055523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.761 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds