Wall clock time and date at job start Tue Mar 31 2020 11:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 H 1.08991 * 109.46698 * 177.94151 * 3 2 1 5 5 C 1.50701 * 109.46925 * 57.94569 * 3 2 1 6 6 H 1.08001 * 119.99696 * 239.99723 * 5 3 2 7 7 C 1.37881 * 120.00174 * 59.99670 * 5 3 2 8 8 N 1.31512 * 119.99554 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47111 * 89.99855 * 9 7 5 11 11 H 1.48504 * 109.46917 * 210.00386 * 9 7 5 12 12 H 1.48500 * 109.46907 * 329.99726 * 9 7 5 13 13 N 1.46895 * 109.47034 * 297.94366 * 3 2 1 14 14 C 1.46896 * 111.00265 * 273.74573 * 13 3 2 15 15 C 1.52994 * 109.47508 * 174.96867 * 14 13 3 16 16 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 17 17 O 1.42900 * 109.47160 * 300.00099 * 15 14 13 18 18 C 1.52997 * 109.47426 * 179.97438 * 15 14 13 19 19 O 1.42903 * 109.47279 * 184.99981 * 18 15 14 20 20 C 1.35998 * 116.99726 * 180.02562 * 19 18 15 21 21 C 1.38637 * 120.04040 * 359.72101 * 20 19 18 22 22 C 1.38194 * 119.99071 * 179.72075 * 21 20 19 23 23 C 1.38446 * 120.07188 * 0.56183 * 22 21 20 24 24 F 1.35102 * 119.96610 * 179.74569 * 23 22 21 25 25 C 1.38448 * 120.07559 * 359.71471 * 23 22 21 26 26 C 1.38337 * 120.00432 * 0.02562 * 25 23 22 27 27 F 1.35095 * 120.03494 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.47321 * 174.43793 * 1 2 3 29 29 H 1.08998 * 109.47304 * 54.44151 * 1 2 3 30 30 H 1.08996 * 109.47307 * 294.43952 * 1 2 3 31 31 H 1.09000 * 109.46838 * 120.00301 * 2 1 3 32 32 H 1.09003 * 109.46938 * 239.99900 * 2 1 3 33 33 H 0.97006 * 119.99248 * 180.02562 * 8 7 5 34 34 H 1.00901 * 110.99934 * 149.79362 * 13 3 2 35 35 H 1.09006 * 109.46730 * 294.96677 * 14 13 3 36 36 H 1.08996 * 109.47238 * 54.96140 * 14 13 3 37 37 H 0.96703 * 113.99804 * 299.99751 * 17 15 14 38 38 H 1.08999 * 109.47062 * 304.99927 * 18 15 14 39 39 H 1.09001 * 109.46808 * 65.00128 * 18 15 14 40 40 H 1.07994 * 120.00292 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.96217 * 180.25147 * 22 21 20 42 42 H 1.07995 * 119.99705 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0369 5 6 1.4965 2.1674 1.2042 6 1 0.8794 3.0442 1.0737 7 6 1.7869 1.7114 2.4726 8 7 2.5378 0.6435 2.6314 9 14 1.1125 2.6096 3.9652 10 1 -0.2085 2.0387 4.3314 11 1 2.0527 2.4525 5.1040 12 1 0.9575 4.0517 3.6468 13 7 1.5913 2.1205 -1.2235 14 6 2.5289 1.8855 -2.3296 15 6 1.9672 2.4993 -3.6135 16 1 1.8309 3.5718 -3.4743 17 8 0.7088 1.8952 -3.9193 18 6 2.9440 2.2552 -4.7655 19 8 2.4767 2.9272 -5.9369 20 6 3.2353 2.8104 -7.0596 21 6 4.4069 2.0698 -7.0317 22 6 5.1740 1.9471 -8.1746 23 6 4.7799 2.5727 -9.3451 24 9 5.5341 2.4556 -10.4598 25 6 3.6134 3.3178 -9.3747 26 6 2.8403 3.4383 -8.2338 27 9 1.7022 4.1656 -8.2619 28 1 -0.3634 -1.0228 -0.0996 29 1 -0.3634 0.5976 -0.8360 30 1 -0.3634 0.4252 0.9355 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.7418 0.3225 3.5238 34 1 1.4619 3.1082 -1.0628 35 1 3.4888 2.3464 -2.0963 36 1 2.6652 0.8131 -2.4689 37 1 0.7545 0.9390 -4.0565 38 1 3.9279 2.6384 -4.4949 39 1 3.0125 1.1854 -4.9632 40 1 4.7180 1.5855 -6.1179 41 1 6.0845 1.3667 -8.1534 42 1 3.3069 3.8049 -10.2885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250882460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:02 Heat of formation + Delta-G solvation = -155.459044 kcal Electronic energy + Delta-G solvation = -25714.389441 eV Core-core repulsion = 21523.810459 eV Total energy + Delta-G solvation = -4190.578981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.28292 -49.13686 -40.39365 -38.20784 -37.03969 -35.65387 -32.67713 -31.39394 -31.11482 -30.29501 -29.07272 -26.65164 -24.79678 -23.43800 -23.11789 -22.62490 -21.42930 -19.13778 -18.82870 -18.09610 -17.73726 -16.94676 -16.61120 -16.19727 -16.09754 -15.89459 -15.57422 -15.10268 -15.02375 -14.74613 -14.66877 -14.31688 -13.82167 -13.68355 -13.41774 -13.00659 -12.78171 -12.61790 -12.38227 -12.05864 -11.84510 -11.81099 -11.50330 -11.19149 -10.98110 -10.80907 -10.74174 -10.40633 -10.16696 -10.05790 -9.62246 -9.54220 -9.37046 -8.83907 -8.51635 -8.48967 -7.30902 -6.06980 -4.12187 0.51067 0.63388 2.64498 2.93610 3.27153 3.34024 3.36873 3.53208 3.94609 4.12380 4.34201 4.37696 4.47079 4.55992 4.64126 4.84365 4.90347 5.11009 5.24732 5.28825 5.34074 5.42755 5.47669 5.55631 5.59109 5.65729 5.98994 6.15188 6.19898 6.48332 6.67597 6.82342 6.90617 7.19589 7.22630 7.45046 7.70442 7.73897 7.77836 7.88121 8.19376 8.30661 8.58947 8.96290 9.52897 10.99104 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.002240 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.952153 B =12496.391542 C =12746.612895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.034 3.966 15 C 0.117 3.883 16 H 0.104 0.896 17 O -0.536 6.536 18 C 0.023 3.977 19 O -0.290 6.290 20 C 0.096 3.904 21 C -0.157 4.157 22 C -0.120 4.120 23 C 0.085 3.915 24 F -0.134 7.134 25 C -0.153 4.153 26 C 0.098 3.902 27 F -0.121 7.121 28 H 0.012 0.988 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.333 0.667 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.370 0.630 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 1.609 -21.476 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.139 4.139 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.097 4.097 15 C 0.056 3.944 16 H 0.122 0.878 17 O -0.340 6.340 18 C -0.052 4.052 19 O -0.203 6.203 20 C 0.049 3.951 21 C -0.176 4.176 22 C -0.139 4.139 23 C 0.065 3.935 24 F -0.113 7.113 25 C -0.173 4.173 26 C 0.078 3.922 27 F -0.100 7.100 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.217 0.783 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.983 1.727 -21.434 22.073 hybrid contribution 0.910 0.333 0.939 1.349 sum 5.893 2.060 -20.495 21.425 Atomic orbital electron populations 1.21447 0.97318 0.97176 1.01817 1.21421 0.95276 0.98079 0.99116 1.19142 0.93155 0.91721 0.85090 0.98334 1.21175 1.31670 1.12043 0.90282 0.92223 1.24882 0.95027 0.95028 0.98903 1.69885 1.37400 1.23116 1.22430 0.86559 0.78820 0.80099 0.82316 1.20582 1.21345 1.19952 1.60535 1.46596 1.16493 1.06861 1.22449 0.94585 1.00504 0.92129 1.21938 0.83299 0.99459 0.89680 0.87785 1.86652 1.29377 1.25438 1.92516 1.23882 0.99816 0.97113 0.84422 1.86277 1.47311 1.69788 1.16922 1.19117 0.91944 0.96812 0.87262 1.21075 0.94425 1.01959 1.00132 1.21021 1.01364 1.00468 0.91004 1.17136 0.91346 1.01369 0.83610 1.91524 1.74806 1.94657 1.50288 1.20895 0.94963 1.02539 0.98879 1.16553 0.86031 0.97594 0.92035 1.91557 1.46864 1.74721 1.96846 0.96924 0.93056 0.92998 0.89715 0.97406 0.92943 0.84938 0.95318 0.91223 0.78341 0.90758 0.91189 0.83254 0.83665 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.46 37.16 0.35 -2.30 16 2 C -0.10 -2.33 5.58 -26.73 -0.15 -2.48 16 3 C 0.22 5.10 2.30 -68.87 -0.16 4.95 16 4 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -13.36 7.33 -34.44 -0.25 -13.61 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.53 11.34 55.43 0.63 -23.90 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.67 -13.19 5.38 -107.96 -0.58 -13.77 16 14 C 0.03 0.52 5.12 -3.83 -0.02 0.50 16 15 C 0.12 1.53 3.49 -26.74 -0.09 1.44 16 16 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 17 O -0.54 -7.93 13.17 -40.06 -0.53 -8.45 16 18 C 0.02 0.24 4.38 37.16 0.16 0.40 16 19 O -0.29 -3.58 9.97 -24.56 -0.24 -3.83 16 20 C 0.10 1.03 6.69 -39.19 -0.26 0.76 16 21 C -0.16 -1.29 9.04 -39.45 -0.36 -1.65 16 22 C -0.12 -0.90 10.02 -39.52 -0.40 -1.29 16 23 C 0.08 0.73 7.30 -39.43 -0.29 0.44 16 24 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16 25 C -0.15 -1.34 10.00 -39.47 -0.39 -1.73 16 26 C 0.10 1.06 7.31 -39.30 -0.29 0.77 16 27 F -0.12 -1.51 17.11 2.25 0.04 -1.47 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 1.10 7.50 -51.93 -0.39 0.71 16 30 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 31 H 0.08 2.21 6.13 -51.93 -0.32 1.89 16 32 H 0.01 0.16 7.43 -51.93 -0.39 -0.23 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.33 6.57 8.25 -39.29 -0.32 6.24 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.05 7.40 -51.93 -0.38 0.66 16 37 H 0.37 4.35 9.05 45.56 0.41 4.76 16 38 H 0.07 0.64 7.65 -51.93 -0.40 0.25 16 39 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 40 H 0.15 0.95 6.30 -52.49 -0.33 0.62 16 41 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -29.42 357.43 -7.47 -36.90 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.95 Total: 6.75 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.24 Total: -12.21 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.05 Total: -37.67 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.77 Total: -12.28 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.42 -7.47 -36.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250882460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.563 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds