Wall clock time and date at job start Tue Mar 31 2020 11:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 H 1.08991 * 109.46698 * 177.94151 * 3 2 1 5 5 C 1.50701 * 109.46925 * 57.94569 * 3 2 1 6 6 H 1.08001 * 119.99696 * 239.99723 * 5 3 2 7 7 C 1.37881 * 120.00174 * 59.99670 * 5 3 2 8 8 N 1.31512 * 119.99554 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47111 * 89.99855 * 9 7 5 11 11 H 1.48504 * 109.46917 * 210.00386 * 9 7 5 12 12 H 1.48500 * 109.46907 * 329.99726 * 9 7 5 13 13 N 1.46895 * 109.47034 * 297.94366 * 3 2 1 14 14 C 1.46896 * 111.00265 * 273.74573 * 13 3 2 15 15 C 1.52994 * 109.47508 * 174.96867 * 14 13 3 16 16 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 17 17 O 1.42900 * 109.47160 * 300.00099 * 15 14 13 18 18 C 1.52997 * 109.47426 * 179.97438 * 15 14 13 19 19 O 1.42903 * 109.47279 * 184.99981 * 18 15 14 20 20 C 1.35998 * 116.99726 * 180.02562 * 19 18 15 21 21 C 1.38637 * 120.04040 * 359.72101 * 20 19 18 22 22 C 1.38194 * 119.99071 * 179.72075 * 21 20 19 23 23 C 1.38446 * 120.07188 * 0.56183 * 22 21 20 24 24 F 1.35102 * 119.96610 * 179.74569 * 23 22 21 25 25 C 1.38448 * 120.07559 * 359.71471 * 23 22 21 26 26 C 1.38337 * 120.00432 * 0.02562 * 25 23 22 27 27 F 1.35095 * 120.03494 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.47321 * 174.43793 * 1 2 3 29 29 H 1.08998 * 109.47304 * 54.44151 * 1 2 3 30 30 H 1.08996 * 109.47307 * 294.43952 * 1 2 3 31 31 H 1.09000 * 109.46838 * 120.00301 * 2 1 3 32 32 H 1.09003 * 109.46938 * 239.99900 * 2 1 3 33 33 H 0.97006 * 119.99248 * 180.02562 * 8 7 5 34 34 H 1.00901 * 110.99934 * 149.79362 * 13 3 2 35 35 H 1.09006 * 109.46730 * 294.96677 * 14 13 3 36 36 H 1.08996 * 109.47238 * 54.96140 * 14 13 3 37 37 H 0.96703 * 113.99804 * 299.99751 * 17 15 14 38 38 H 1.08999 * 109.47062 * 304.99927 * 18 15 14 39 39 H 1.09001 * 109.46808 * 65.00128 * 18 15 14 40 40 H 1.07994 * 120.00292 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.96217 * 180.25147 * 22 21 20 42 42 H 1.07995 * 119.99705 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0369 5 6 1.4965 2.1674 1.2042 6 1 0.8794 3.0442 1.0737 7 6 1.7869 1.7114 2.4726 8 7 2.5378 0.6435 2.6314 9 14 1.1125 2.6096 3.9652 10 1 -0.2085 2.0387 4.3314 11 1 2.0527 2.4525 5.1040 12 1 0.9575 4.0517 3.6468 13 7 1.5913 2.1205 -1.2235 14 6 2.5289 1.8855 -2.3296 15 6 1.9672 2.4993 -3.6135 16 1 1.8309 3.5718 -3.4743 17 8 0.7088 1.8952 -3.9193 18 6 2.9440 2.2552 -4.7655 19 8 2.4767 2.9272 -5.9369 20 6 3.2353 2.8104 -7.0596 21 6 4.4069 2.0698 -7.0317 22 6 5.1740 1.9471 -8.1746 23 6 4.7799 2.5727 -9.3451 24 9 5.5341 2.4556 -10.4598 25 6 3.6134 3.3178 -9.3747 26 6 2.8403 3.4383 -8.2338 27 9 1.7022 4.1656 -8.2619 28 1 -0.3634 -1.0228 -0.0996 29 1 -0.3634 0.5976 -0.8360 30 1 -0.3634 0.4252 0.9355 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.7418 0.3225 3.5238 34 1 1.4619 3.1082 -1.0628 35 1 3.4888 2.3464 -2.0963 36 1 2.6652 0.8131 -2.4689 37 1 0.7545 0.9390 -4.0565 38 1 3.9279 2.6384 -4.4949 39 1 3.0125 1.1854 -4.9632 40 1 4.7180 1.5855 -6.1179 41 1 6.0845 1.3667 -8.1534 42 1 3.3069 3.8049 -10.2885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250882460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:02 Heat of formation + Delta-G solvation = -174.958352 kcal Electronic energy + Delta-G solvation = -25715.234994 eV Core-core repulsion = 21523.810459 eV Total energy + Delta-G solvation = -4191.424535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.98306 -49.95176 -41.16611 -39.21020 -38.13433 -37.13541 -34.39170 -32.75989 -32.02563 -31.39062 -30.07381 -28.28799 -26.10800 -24.96962 -24.15389 -23.44555 -22.49137 -20.92631 -19.59758 -18.90708 -18.49619 -18.40770 -17.72502 -17.24771 -17.03994 -16.77378 -16.72677 -16.35223 -15.93968 -15.80317 -15.55435 -15.46347 -15.13472 -15.08218 -14.74001 -14.41743 -13.89473 -13.64630 -13.54955 -13.36489 -13.09987 -12.93434 -12.82578 -12.61449 -12.48589 -12.37556 -11.99136 -11.89920 -11.80820 -11.61997 -11.32339 -10.88691 -10.74288 -10.51471 -10.20133 -9.22672 -8.93047 -8.09373 -6.20229 -0.14356 -0.05998 1.41721 1.44162 1.52244 1.84782 2.26909 2.43350 2.83436 3.19910 3.26664 3.39265 3.51769 3.65651 3.79683 3.92735 3.94288 4.10015 4.13372 4.32528 4.41149 4.43367 4.66216 4.71605 4.77230 4.79372 4.84260 4.94125 4.95558 4.99085 5.06247 5.33703 5.41860 5.51201 5.59407 5.73443 5.84866 5.93542 6.16460 6.30831 6.50226 6.80439 6.93110 7.05446 7.48465 8.95457 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.002240 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.952153 B =12496.391542 C =12746.612895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C 0.223 3.777 4 H -0.030 1.030 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.675 5.675 14 C 0.037 3.963 15 C 0.125 3.875 16 H 0.092 0.908 17 O -0.558 6.558 18 C 0.029 3.971 19 O -0.316 6.316 20 C 0.081 3.919 21 C -0.150 4.150 22 C -0.109 4.109 23 C 0.079 3.921 24 F -0.136 7.136 25 C -0.149 4.149 26 C 0.071 3.929 27 F -0.139 7.139 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.025 0.975 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.330 0.670 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.382 0.618 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 1.157 -22.486 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C 0.114 3.886 4 H -0.013 1.013 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.306 5.306 14 C -0.093 4.093 15 C 0.065 3.935 16 H 0.110 0.890 17 O -0.364 6.364 18 C -0.047 4.047 19 O -0.229 6.229 20 C 0.034 3.966 21 C -0.169 4.169 22 C -0.127 4.127 23 C 0.060 3.940 24 F -0.115 7.115 25 C -0.168 4.168 26 C 0.052 3.948 27 F -0.118 7.118 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.231 0.769 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.190 0.810 41 H 0.191 0.809 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.789 1.274 -22.467 23.236 hybrid contribution 0.706 0.463 1.164 1.438 sum 6.495 1.738 -21.303 22.339 Atomic orbital electron populations 1.21304 0.96326 0.98363 1.00524 1.21296 0.96018 0.97603 0.98556 1.18914 0.91167 0.92267 0.86203 1.01298 1.21465 1.31294 1.11964 0.91507 0.92791 1.25561 0.95396 0.95728 1.01367 1.70004 1.38428 1.24217 1.22793 0.85678 0.78090 0.79201 0.79390 1.20482 1.21126 1.19462 1.60441 1.47836 1.16012 1.06270 1.22482 0.94041 1.01195 0.91573 1.21736 0.83414 0.98437 0.89882 0.88989 1.86617 1.30470 1.26699 1.92587 1.23785 0.99338 0.98479 0.83064 1.86211 1.48425 1.70540 1.17746 1.19321 0.92842 0.97810 0.86650 1.21314 0.93273 1.01075 1.01236 1.21340 1.01823 0.99495 0.90077 1.17279 0.91246 1.01539 0.83976 1.91523 1.74790 1.94678 1.50517 1.21019 0.94756 1.02247 0.98821 1.16850 0.86238 0.98702 0.93059 1.91504 1.47926 1.75367 1.96994 0.94802 0.92594 0.95548 0.92699 0.95441 0.93058 0.85254 0.94684 0.90565 0.76919 0.88789 0.88922 0.81001 0.80919 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.46 71.98 0.68 -3.97 16 2 C -0.10 -4.42 5.58 30.60 0.17 -4.25 16 3 C 0.22 10.54 2.30 44.17 0.10 10.64 16 4 H -0.03 -1.60 7.84 -2.39 -0.02 -1.62 16 5 C -0.52 -27.46 7.33 25.60 0.19 -27.27 16 6 H 0.05 2.83 7.60 -2.91 -0.02 2.81 16 7 C 0.02 1.00 5.30 84.66 0.45 1.45 16 8 N -0.91 -51.00 11.34 21.45 0.24 -50.76 16 9 Si 0.95 42.79 29.54 68.60 2.03 44.81 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.68 -26.07 5.38 -495.49 -2.66 -28.73 16 14 C 0.04 1.09 5.12 86.30 0.44 1.53 16 15 C 0.13 3.12 3.49 30.59 0.11 3.22 16 16 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 17 O -0.56 -15.79 13.17 -144.36 -1.90 -17.70 16 18 C 0.03 0.52 4.38 71.98 0.31 0.84 16 19 O -0.32 -7.41 9.97 -88.91 -0.89 -8.29 16 20 C 0.08 1.61 6.69 22.52 0.15 1.76 16 21 C -0.15 -2.04 9.04 22.35 0.20 -1.84 16 22 C -0.11 -1.30 10.02 22.31 0.22 -1.07 16 23 C 0.08 1.19 7.30 22.37 0.16 1.35 16 24 F -0.14 -2.17 17.27 44.97 0.78 -1.40 16 25 C -0.15 -2.44 10.00 22.34 0.22 -2.22 16 26 C 0.07 1.50 7.31 22.45 0.16 1.67 16 27 F -0.14 -3.54 17.11 44.97 0.77 -2.77 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 2.33 7.50 -2.39 -0.02 2.32 16 30 H 0.03 1.24 7.37 -2.39 -0.02 1.22 16 31 H 0.05 2.87 6.13 -2.39 -0.01 2.86 16 32 H 0.03 1.12 7.43 -2.39 -0.02 1.10 16 33 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 34 H 0.33 13.00 8.25 -89.69 -0.74 12.26 16 35 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 2.13 7.40 -2.39 -0.02 2.11 16 37 H 0.38 8.32 9.05 -74.06 -0.67 7.65 16 38 H 0.09 1.34 7.65 -2.39 -0.02 1.32 16 39 H 0.09 1.27 7.67 -2.39 -0.02 1.25 16 40 H 0.17 1.49 6.30 -2.91 -0.02 1.47 16 41 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 42 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -63.66 357.43 1.60 -62.07 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.35 Total: 20.93 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.58 Total: -18.16 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.42 Total: -79.49 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -2.79 Total: -25.99 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.55 Total: -4.17 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -63.66 1.60 -62.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250882460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.893 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds