Wall clock time and date at job start Tue Mar 31 2020 10:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.30497 * 125.65198 * 264.69366 * 4 2 1 6 6 C 1.34125 * 109.25760 * 179.89096 * 5 4 2 7 7 C 1.34676 * 108.01692 * 0.37366 * 6 5 4 8 8 C 1.50702 * 126.58579 * 179.74486 * 7 6 5 9 9 N 1.46507 * 109.46652 * 265.03673 * 8 7 6 10 10 S 1.65597 * 119.99513 * 165.00391 * 9 8 7 11 11 O 1.42095 * 104.27872 * 181.07148 * 10 9 8 12 12 O 1.42098 * 104.27951 * 308.92920 * 10 9 8 13 13 C 1.81400 * 104.45035 * 64.99977 * 10 9 8 14 14 C 1.53002 * 109.46969 * 179.97438 * 13 10 9 15 15 C 1.53008 * 109.46999 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47170 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00263 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00429 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46966 * 59.99795 * 20 18 16 22 22 H 1.48495 * 109.47315 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47255 * 300.00521 * 20 18 16 24 24 N 1.35043 * 125.64448 * 84.99860 * 4 2 1 25 25 H 0.96998 * 126.40327 * 359.95120 * 24 4 2 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.07998 * 125.99297 * 180.18702 * 6 5 4 34 34 H 1.08993 * 109.47506 * 25.04055 * 8 7 6 35 35 H 1.08999 * 109.46909 * 145.04150 * 8 7 6 36 36 H 0.96992 * 119.99970 * 345.00502 * 9 8 7 37 37 H 1.08995 * 109.47069 * 299.99786 * 13 10 9 38 38 H 1.08999 * 109.47264 * 60.00338 * 13 10 9 39 39 H 1.09005 * 109.47091 * 299.99661 * 14 13 10 40 40 H 1.08993 * 109.47480 * 60.00139 * 14 13 10 41 41 H 1.08995 * 109.46821 * 299.99689 * 15 14 13 42 42 H 1.08993 * 109.47124 * 59.99636 * 15 14 13 43 43 H 0.97000 * 119.99809 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.3783 -1.9671 -1.2953 6 6 2.7720 -2.2536 -2.5450 7 6 2.6737 -1.1299 -3.2807 8 6 3.0154 -0.9794 -4.7408 9 7 4.3871 -0.4818 -4.8724 10 16 5.1629 -0.5692 -6.3328 11 8 6.4522 -0.0292 -6.0777 12 8 5.0019 -1.9227 -6.7347 13 6 4.2139 0.5336 -7.4162 14 6 4.8398 0.5395 -8.8123 15 6 4.0397 1.4702 -9.7260 16 6 4.6565 1.4766 -11.1009 17 1 5.5314 0.8764 -11.3031 18 6 4.1034 2.2476 -12.1012 19 7 3.0377 2.9780 -11.8552 20 14 4.8683 2.2561 -13.8053 21 1 4.8512 0.8796 -14.3624 22 1 4.0918 3.1592 -14.6921 23 1 6.2707 2.7363 -13.7161 24 7 2.2045 -0.1506 -2.4473 25 1 2.0283 0.7728 -2.6862 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.1114 -3.2160 -2.8986 34 1 2.9307 -1.9469 -5.2354 35 1 2.3266 -0.2729 -5.2041 36 1 4.8408 -0.1013 -4.1042 37 1 3.1843 0.1818 -7.4807 38 1 4.2277 1.5442 -7.0080 39 1 5.8693 0.8916 -8.7475 40 1 4.8263 -0.4709 -9.2209 41 1 3.0101 1.1186 -9.7909 42 1 4.0535 2.4805 -9.3173 43 1 2.6487 3.5208 -12.5588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309894460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:29 Heat of formation + Delta-G solvation = -45.832229 kcal Electronic energy + Delta-G solvation = -23557.671526 eV Core-core repulsion = 19957.979458 eV Total energy + Delta-G solvation = -3599.692068 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.51194 -36.99671 -36.27241 -35.81496 -35.24490 -34.72568 -32.72904 -32.23194 -29.74589 -27.86585 -27.69780 -25.82802 -23.77820 -22.88866 -21.30243 -20.73769 -20.53466 -19.29353 -18.06649 -17.37257 -16.62912 -16.40406 -15.78863 -15.65369 -15.26532 -15.00611 -14.83943 -14.52416 -14.22335 -14.00898 -13.63861 -13.41893 -13.38741 -12.73381 -12.63526 -12.32934 -12.08092 -12.00019 -11.90271 -11.87898 -11.83567 -11.71120 -11.49278 -11.28591 -10.92710 -10.91766 -10.51058 -10.37405 -10.31378 -9.99900 -9.80935 -9.38542 -9.15190 -8.65206 -8.44119 -6.09438 -4.12610 0.35286 1.60244 2.67760 2.71377 2.96889 3.29806 3.33754 3.36984 3.85936 3.89618 4.28472 4.34005 4.39066 4.40583 4.57392 4.74426 4.79788 4.94140 5.04804 5.09663 5.11878 5.21515 5.24757 5.26306 5.27201 5.36304 5.49714 5.52529 5.69672 5.74175 5.81806 5.91258 6.21249 6.38812 6.42446 6.74516 6.82221 7.01085 7.51803 7.61605 7.75991 7.88317 8.28668 8.93403 9.52333 11.01761 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.002410 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.436879 B =11613.762775 C =12360.355122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.012 4.012 3 C -0.154 4.154 4 C 0.223 3.777 5 N -0.490 5.490 6 C 0.003 3.997 7 C -0.038 4.038 8 C 0.193 3.807 9 N -1.124 6.124 10 S 2.601 3.399 11 O -0.961 6.961 12 O -0.959 6.959 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 N -0.557 5.557 25 H 0.419 0.581 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.174 0.826 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -3.880 24.137 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.212 4.212 4 C -0.041 4.041 5 N -0.209 5.209 6 C -0.147 4.147 7 C -0.154 4.154 8 C 0.066 3.934 9 N -0.882 5.882 10 S 2.697 3.303 11 O -0.951 6.951 12 O -0.948 6.948 13 C -0.741 4.741 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 N -0.161 5.161 25 H 0.257 0.743 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.191 0.809 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.026 -4.995 24.368 25.377 hybrid contribution -0.120 1.738 -1.558 2.337 sum -5.147 -3.257 22.810 23.609 Atomic orbital electron populations 1.21852 0.93292 1.02876 1.02281 1.19637 0.96175 0.94909 0.92463 1.21917 1.01802 0.94729 1.02724 1.23205 1.03317 0.90273 0.87347 1.70290 1.17408 1.12179 1.21014 1.22270 1.04562 0.98608 0.89268 1.21056 1.09852 0.90236 0.94298 1.19597 0.82466 1.01532 0.89844 1.55899 1.24917 1.78532 1.28867 1.05346 0.74846 0.76111 0.74007 1.93586 1.36892 1.81198 1.83434 1.93575 1.86483 1.32684 1.82100 1.30556 1.14485 1.15981 1.13063 1.21511 1.00260 1.03026 0.89782 1.19057 0.94997 0.93697 0.92980 1.21215 1.13151 1.26919 0.95268 0.92383 1.25020 0.94949 0.95276 0.99120 1.69944 1.21487 1.28483 1.33587 0.86603 0.79328 0.78055 0.83741 1.20077 1.21244 1.20108 1.43099 1.50741 1.12497 1.09728 0.74304 0.92663 0.91414 0.91741 0.87882 0.90947 0.91923 0.92714 0.80870 0.87529 0.90762 0.75130 0.85500 0.85350 0.91524 0.91439 0.96129 0.96180 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.18 37.16 0.34 -0.41 16 2 C -0.01 -0.07 3.39 -91.77 -0.31 -0.38 16 3 C -0.15 -0.67 8.94 37.15 0.33 -0.34 16 4 C 0.22 1.98 6.87 -155.41 -1.07 0.91 16 5 N -0.49 -5.66 11.25 -10.81 -0.12 -5.78 16 6 C 0.00 0.03 11.79 -17.81 -0.21 -0.18 16 7 C -0.04 -0.35 6.63 -81.60 -0.54 -0.89 16 8 C 0.19 1.65 6.68 -5.19 -0.03 1.61 16 9 N -1.12 -11.04 5.88 -11.65 -0.07 -11.11 16 10 S 2.60 35.49 5.46 -107.50 -0.59 34.90 16 11 O -0.96 -16.27 18.08 -57.54 -1.04 -17.31 16 12 O -0.96 -15.87 17.50 -57.54 -1.01 -16.88 16 13 C -0.61 -8.63 6.07 37.16 0.23 -8.41 16 14 C -0.11 -2.08 5.16 -26.73 -0.14 -2.21 16 15 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 16 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 20 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 N -0.56 -4.24 5.91 -6.54 -0.04 -4.28 16 25 H 0.42 2.14 8.16 -40.82 -0.33 1.81 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.20 7.42 -51.93 -0.39 -0.18 16 33 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 0.91 7.69 -51.93 -0.40 0.51 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.42 3.67 8.61 -34.47 -0.30 3.37 16 37 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -36.59 374.30 -10.33 -46.92 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.87 Total: 0.15 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -1.95 Total: -23.08 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.51 Total: -46.69 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -2.05 Total: -34.19 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 35.49 SS G_CDS: -0.59 Total: 34.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.59 -10.33 -46.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309894460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.091 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds