Wall clock time and date at job start Tue Mar 31 2020 10:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.30497 * 125.65198 * 264.69366 * 4 2 1 6 6 C 1.34125 * 109.25760 * 179.89096 * 5 4 2 7 7 C 1.34676 * 108.01692 * 0.37366 * 6 5 4 8 8 C 1.50702 * 126.58579 * 179.74486 * 7 6 5 9 9 N 1.46507 * 109.46652 * 265.03673 * 8 7 6 10 10 S 1.65597 * 119.99513 * 165.00391 * 9 8 7 11 11 O 1.42095 * 104.27872 * 181.07148 * 10 9 8 12 12 O 1.42098 * 104.27951 * 308.92920 * 10 9 8 13 13 C 1.81400 * 104.45035 * 64.99977 * 10 9 8 14 14 C 1.53002 * 109.46969 * 179.97438 * 13 10 9 15 15 C 1.53008 * 109.46999 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47170 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00263 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00429 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46966 * 59.99795 * 20 18 16 22 22 H 1.48495 * 109.47315 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47255 * 300.00521 * 20 18 16 24 24 N 1.35043 * 125.64448 * 84.99860 * 4 2 1 25 25 H 0.96998 * 126.40327 * 359.95120 * 24 4 2 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.07998 * 125.99297 * 180.18702 * 6 5 4 34 34 H 1.08993 * 109.47506 * 25.04055 * 8 7 6 35 35 H 1.08999 * 109.46909 * 145.04150 * 8 7 6 36 36 H 0.96992 * 119.99970 * 345.00502 * 9 8 7 37 37 H 1.08995 * 109.47069 * 299.99786 * 13 10 9 38 38 H 1.08999 * 109.47264 * 60.00338 * 13 10 9 39 39 H 1.09005 * 109.47091 * 299.99661 * 14 13 10 40 40 H 1.08993 * 109.47480 * 60.00139 * 14 13 10 41 41 H 1.08995 * 109.46821 * 299.99689 * 15 14 13 42 42 H 1.08993 * 109.47124 * 59.99636 * 15 14 13 43 43 H 0.97000 * 119.99809 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.3783 -1.9671 -1.2953 6 6 2.7720 -2.2536 -2.5450 7 6 2.6737 -1.1299 -3.2807 8 6 3.0154 -0.9794 -4.7408 9 7 4.3871 -0.4818 -4.8724 10 16 5.1629 -0.5692 -6.3328 11 8 6.4522 -0.0292 -6.0777 12 8 5.0019 -1.9227 -6.7347 13 6 4.2139 0.5336 -7.4162 14 6 4.8398 0.5395 -8.8123 15 6 4.0397 1.4702 -9.7260 16 6 4.6565 1.4766 -11.1009 17 1 5.5314 0.8764 -11.3031 18 6 4.1034 2.2476 -12.1012 19 7 3.0377 2.9780 -11.8552 20 14 4.8683 2.2561 -13.8053 21 1 4.8512 0.8796 -14.3624 22 1 4.0918 3.1592 -14.6921 23 1 6.2707 2.7363 -13.7161 24 7 2.2045 -0.1506 -2.4473 25 1 2.0283 0.7728 -2.6862 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.1114 -3.2160 -2.8986 34 1 2.9307 -1.9469 -5.2354 35 1 2.3266 -0.2729 -5.2041 36 1 4.8408 -0.1013 -4.1042 37 1 3.1843 0.1818 -7.4807 38 1 4.2277 1.5442 -7.0080 39 1 5.8693 0.8916 -8.7475 40 1 4.8263 -0.4709 -9.2209 41 1 3.0101 1.1186 -9.7909 42 1 4.0535 2.4805 -9.3173 43 1 2.6487 3.5208 -12.5588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309894460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:28 Heat of formation + Delta-G solvation = -72.904667 kcal Electronic energy + Delta-G solvation = -23558.845475 eV Core-core repulsion = 19957.979458 eV Total energy + Delta-G solvation = -3600.866017 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.19919 -38.21464 -37.09722 -36.86396 -36.45529 -35.90214 -34.15726 -33.43906 -30.46758 -29.64591 -28.06004 -26.52633 -25.61860 -23.48697 -22.43080 -21.98577 -21.14977 -20.37031 -18.90277 -18.65352 -18.22942 -17.32964 -17.13156 -16.51200 -16.44880 -16.02355 -15.83211 -15.52593 -15.35173 -14.64808 -14.48458 -14.38790 -14.19169 -13.99516 -13.84178 -13.50102 -13.20370 -13.12990 -13.09844 -13.02283 -12.93972 -12.73093 -12.64477 -12.39930 -12.15713 -12.13053 -11.91491 -11.72920 -11.38786 -11.22864 -11.06691 -11.02016 -10.56696 -10.42041 -9.36819 -8.22828 -6.33286 -0.77552 0.88328 1.40534 1.42516 1.50459 1.81436 2.07751 2.14176 2.39870 2.76721 3.10992 3.23367 3.32861 3.66580 3.77875 3.91109 3.95500 4.11503 4.16612 4.27858 4.39070 4.41666 4.56793 4.61677 4.67005 4.73893 4.75587 4.90971 4.94222 4.97854 5.08287 5.09940 5.22942 5.30943 5.34056 5.46248 5.64484 5.70128 5.80092 5.97282 6.20402 6.44862 6.82412 7.06103 7.35988 8.88308 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.002410 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.436879 B =11613.762775 C =12360.355122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.150 4.150 4 C 0.224 3.776 5 N -0.528 5.528 6 C -0.023 4.023 7 C -0.033 4.033 8 C 0.186 3.814 9 N -1.109 6.109 10 S 2.633 3.367 11 O -0.993 6.993 12 O -0.987 6.987 13 C -0.607 4.607 14 C -0.108 4.108 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.059 0.941 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.268 1.268 24 N -0.547 5.547 25 H 0.432 0.568 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.176 0.824 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.423 0.577 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.005 0.995 42 H 0.003 0.997 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 -3.182 24.601 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.208 4.208 4 C -0.041 4.041 5 N -0.248 5.248 6 C -0.172 4.172 7 C -0.150 4.150 8 C 0.060 3.940 9 N -0.870 5.870 10 S 2.729 3.271 11 O -0.984 6.984 12 O -0.977 6.977 13 C -0.738 4.738 14 C -0.147 4.147 15 C -0.007 4.007 16 C -0.591 4.591 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.193 1.193 24 N -0.151 5.151 25 H 0.273 0.727 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.193 0.807 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.259 0.741 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.377 -4.284 24.829 25.764 hybrid contribution -0.064 1.511 -1.610 2.208 sum -5.441 -2.773 23.220 24.010 Atomic orbital electron populations 1.21823 0.92500 1.02196 1.03342 1.19762 0.96718 0.95659 0.91010 1.21903 1.01318 0.93566 1.03973 1.23715 1.02204 0.89848 0.88369 1.70259 1.18954 1.13860 1.21746 1.22496 1.05550 0.99556 0.89596 1.21015 1.09483 0.90082 0.94446 1.19842 0.81885 1.02568 0.89720 1.55475 1.25569 1.78406 1.27537 1.04168 0.73896 0.74925 0.74144 1.93540 1.39149 1.81549 1.84130 1.93540 1.86776 1.34328 1.83031 1.30490 1.15530 1.17746 1.10048 1.21322 0.99785 1.01627 0.92009 1.18960 0.94784 0.93934 0.93042 1.21730 1.13415 1.26908 0.97050 0.92236 1.25907 0.95424 0.94904 1.03257 1.70053 1.22747 1.29229 1.34901 0.85565 0.78646 0.78399 0.78869 1.19255 1.20677 1.19331 1.43048 1.50005 1.12952 1.09116 0.72702 0.92340 0.89606 0.93273 0.88315 0.89477 0.92637 0.91738 0.80701 0.87427 0.87853 0.74150 0.83113 0.83376 0.91722 0.91415 0.97630 0.97844 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 2 C -0.01 -0.12 3.39 -11.54 -0.04 -0.16 16 3 C -0.15 -0.98 8.94 71.98 0.64 -0.34 16 4 C 0.22 3.74 6.87 138.13 0.95 4.69 16 5 N -0.53 -12.12 11.25 -188.12 -2.12 -14.23 16 6 C -0.02 -0.47 11.79 83.53 0.98 0.51 16 7 C -0.03 -0.55 6.63 40.95 0.27 -0.28 16 8 C 0.19 2.75 6.68 85.63 0.57 3.32 16 9 N -1.11 -19.44 5.88 -190.78 -1.12 -20.56 16 10 S 2.63 67.88 5.46 -56.49 -0.31 67.57 16 11 O -0.99 -32.59 18.08 -127.65 -2.31 -34.90 16 12 O -0.99 -31.57 17.50 -127.65 -2.23 -33.80 16 13 C -0.61 -16.06 6.07 71.98 0.44 -15.63 16 14 C -0.11 -4.16 5.16 30.60 0.16 -4.00 16 15 C 0.03 1.54 4.97 29.85 0.15 1.69 16 16 C -0.55 -30.84 9.11 25.60 0.23 -30.60 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 18 C 0.00 0.19 5.46 84.65 0.46 0.65 16 19 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 20 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 N -0.55 -7.31 5.91 -174.59 -1.03 -8.34 16 25 H 0.43 3.28 8.16 -92.71 -0.76 2.52 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.30 7.42 -2.39 -0.02 0.28 16 33 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.11 1.63 7.69 -2.39 -0.02 1.62 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.42 6.57 8.61 -96.75 -0.83 5.73 16 37 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.15 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -78.93 374.30 -1.90 -80.83 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -0.57 Total: 13.01 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 5.48 Total: -40.71 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -3.98 Total: -97.59 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -4.54 Total: -68.70 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 67.88 SS G_CDS: -0.31 Total: 67.57 kcal Total: -78.93 -1.90 -80.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309894460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.921 kcal (2) G-P(sol) polarization free energy of solvation -78.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds