Wall clock time and date at job start Tue Mar 31 2020 11:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47340 * 2 1 4 4 H 1.08997 * 109.47083 * 54.99768 * 3 2 1 5 5 N 1.46500 * 109.47093 * 295.00002 * 3 2 1 6 6 C 1.34776 * 120.00315 * 84.99517 * 5 3 2 7 7 O 1.21585 * 119.99909 * 0.02562 * 6 5 3 8 8 C 1.47641 * 120.00446 * 180.02562 * 6 5 3 9 9 C 1.40018 * 119.89390 * 359.72590 * 8 6 5 10 10 C 1.36316 * 120.10644 * 179.75786 * 9 8 6 11 11 C 1.40888 * 119.88962 * 0.52172 * 10 9 8 12 12 C 1.41106 * 120.09922 * 179.71665 * 11 10 9 13 13 H 1.08008 * 119.99762 * 155.08347 * 12 11 10 14 14 C 1.40225 * 120.00098 * 335.07741 * 12 11 10 15 15 N 1.30641 * 120.00352 * 342.21464 * 14 12 11 16 16 Si 1.86807 * 119.99738 * 162.20644 * 14 12 11 17 17 H 1.48500 * 109.46862 * 94.66837 * 16 14 12 18 18 H 1.48503 * 109.46796 * 214.66560 * 16 14 12 19 19 H 1.48499 * 109.47249 * 334.66718 * 16 14 12 20 20 C 1.40883 * 119.79296 * 359.73328 * 11 10 9 21 21 C 1.36315 * 119.89439 * 0.02562 * 20 11 10 22 22 C 1.50703 * 109.47095 * 175.00202 * 3 2 1 23 23 N 1.29936 * 126.28691 * 74.68803 * 22 3 2 24 24 O 1.21307 * 110.25014 * 179.84657 * 23 22 3 25 25 C 1.33645 * 109.80881 * 0.41920 * 24 23 22 26 26 C 1.50694 * 126.54995 * 179.72309 * 25 24 23 27 27 N 1.31132 * 106.89746 * 359.74050 * 25 24 23 28 28 H 1.09004 * 109.46873 * 300.00219 * 1 2 3 29 29 H 1.09001 * 109.47336 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47263 * 60.00228 * 1 2 3 31 31 H 1.09003 * 109.46362 * 119.99916 * 2 1 3 32 32 H 1.08995 * 109.46769 * 239.99666 * 2 1 3 33 33 H 0.97006 * 120.00343 * 265.00512 * 5 3 2 34 34 H 1.07997 * 119.94204 * 0.02631 * 9 8 6 35 35 H 1.08001 * 120.05208 * 180.23445 * 10 9 8 36 36 H 0.97000 * 120.00594 * 180.02562 * 15 14 12 37 37 H 1.08008 * 120.04970 * 179.97438 * 20 11 10 38 38 H 1.08007 * 119.94795 * 179.97438 * 21 20 11 39 39 H 1.09007 * 109.46815 * 270.02174 * 26 25 24 40 40 H 1.08994 * 109.47303 * 30.02452 * 26 25 24 41 41 H 1.09003 * 109.47391 * 150.02859 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3412 2.6325 -0.4319 8 6 0.0444 3.3239 -2.6288 9 6 0.9423 3.3643 -3.7024 10 6 0.5842 3.9678 -4.8710 11 6 -0.6877 4.5612 -4.9937 12 6 -1.0608 5.1924 -6.1993 13 1 -2.1049 5.2861 -6.4592 14 6 -0.0760 5.6981 -7.0600 15 7 1.1352 5.9057 -6.6164 16 14 -0.4958 6.0746 -8.8409 17 1 -0.8545 7.5096 -8.9721 18 1 0.6787 5.7773 -9.6998 19 1 -1.6452 5.2361 -9.2665 20 6 -1.5857 4.5227 -3.9089 21 6 -1.2205 3.9126 -2.7459 22 6 3.5420 1.4442 0.1238 23 7 4.3910 1.1393 -0.8114 24 8 5.5266 1.2414 -0.3971 25 6 5.5089 1.6242 0.8832 26 6 6.7071 1.8591 1.7664 27 7 4.2495 1.7561 1.2242 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5139 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 2.2720 2.1230 -1.9979 34 1 1.9186 2.9127 -3.6058 35 1 1.2761 3.9952 -5.6998 36 1 1.8164 6.2559 -7.2116 37 1 -2.5617 4.9766 -3.9983 38 1 -1.9081 3.8829 -1.9135 39 1 6.9725 0.9311 2.2730 40 1 7.5471 2.1938 1.1577 41 1 6.4685 2.6221 2.5073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361376369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:21 Heat of formation + Delta-G solvation = 40.158151 kcal Electronic energy + Delta-G solvation = -25369.023776 eV Core-core repulsion = 21637.616579 eV Total energy + Delta-G solvation = -3731.407197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.76275 -39.51877 -37.44239 -36.42001 -35.15701 -33.89668 -33.23864 -32.17508 -30.07444 -29.46369 -29.12796 -27.46132 -25.69995 -23.82481 -22.46200 -22.25361 -21.04909 -20.43414 -19.65311 -18.29588 -17.84067 -17.53330 -16.73164 -16.07152 -15.47148 -15.04557 -14.81937 -14.45994 -14.04241 -13.96623 -13.79421 -13.45193 -13.18901 -13.03442 -12.82489 -12.66921 -12.29631 -12.10591 -11.95711 -11.89698 -11.50777 -11.40881 -11.27527 -11.23164 -11.18984 -10.99104 -10.73605 -10.62941 -10.08177 -10.05561 -9.57576 -9.36259 -9.00484 -8.71358 -7.73650 -7.56358 -7.05216 -4.61944 0.98127 2.01519 2.20475 2.63696 2.89146 2.93804 3.00012 3.02633 3.24025 3.68023 3.72979 3.85021 3.99626 4.53796 4.70499 4.89046 4.89991 5.03460 5.15906 5.25130 5.46749 5.55688 5.56119 5.65513 5.80445 5.92578 6.02523 6.05625 6.08337 6.30060 6.31179 6.64721 6.75042 6.80818 6.81117 7.02151 7.11463 7.41835 7.62397 7.76686 7.84577 8.00989 8.05312 8.15696 8.38346 8.61389 8.73579 8.99635 9.86809 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.003099 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.024951 B = 9031.721340 C =10276.674046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.241 3.759 4 H 0.115 0.885 5 N -0.735 5.735 6 C 0.577 3.423 7 O -0.565 6.565 8 C -0.285 4.285 9 C -0.062 4.062 10 C -0.178 4.178 11 C 0.130 3.870 12 C -0.441 4.441 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.771 5.771 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.239 4.239 21 C -0.019 4.019 22 C 0.170 3.830 23 N -0.373 5.373 24 O 0.080 5.920 25 C 0.173 3.827 26 C -0.060 4.060 27 N -0.475 5.475 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.287 0.713 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.876 -7.617 9.718 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.133 0.867 5 N -0.390 5.390 6 C 0.373 3.627 7 O -0.446 6.446 8 C -0.290 4.290 9 C -0.081 4.081 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.469 4.469 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.394 5.394 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.259 4.259 21 C -0.039 4.039 22 C -0.104 4.104 23 N -0.079 5.079 24 O 0.020 5.980 25 C -0.047 4.047 26 C -0.119 4.119 27 N -0.209 5.209 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.979 -7.682 9.781 15.946 hybrid contribution 0.612 0.310 -1.112 1.306 sum 10.591 -7.372 8.670 15.546 Atomic orbital electron populations 1.21786 0.93397 1.00687 1.04092 1.21926 0.98164 0.94179 1.02173 1.19029 0.81220 0.95513 0.90855 0.86707 1.45950 1.18391 1.59836 1.14795 1.18529 0.79675 0.76218 0.88285 1.90650 1.51511 1.61309 1.41150 1.18830 0.98483 1.17266 0.94392 1.20481 0.96102 0.97794 0.93741 1.20966 0.98827 1.02412 0.97474 1.17787 0.91153 0.87052 0.91383 1.19857 0.94707 1.30361 1.01963 0.89660 1.26112 0.94277 0.93127 1.01214 1.69742 1.03401 1.28872 1.37352 0.86211 0.79711 0.79703 0.80755 1.19212 1.19719 1.18055 1.20717 1.01157 1.09906 0.94108 1.20346 0.93791 0.93317 0.96401 1.25986 1.00009 0.99081 0.85298 1.74613 0.89810 1.20644 1.22854 1.85305 1.24458 1.62215 1.26049 1.28871 0.96092 0.95088 0.84659 1.20387 0.89855 1.04918 0.96702 1.71879 1.01296 1.20690 1.27052 0.91882 0.93427 0.91322 0.91438 0.91497 0.76293 0.89505 0.86249 0.90207 0.88327 0.87990 0.88069 0.88365 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.51 37.16 0.32 -1.85 16 2 C -0.12 -1.77 5.59 -26.73 -0.15 -1.92 16 3 C 0.24 3.83 2.80 -69.08 -0.19 3.64 16 4 H 0.12 1.95 7.58 -51.93 -0.39 1.56 16 5 N -0.74 -13.20 4.97 -55.94 -0.28 -13.48 16 6 C 0.58 12.18 6.33 -12.42 -0.08 12.10 16 7 O -0.56 -12.68 13.46 5.29 0.07 -12.61 16 8 C -0.29 -6.55 5.89 -104.73 -0.62 -7.17 16 9 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 10 C -0.18 -4.41 8.63 -39.27 -0.34 -4.75 16 11 C 0.13 3.31 5.57 -106.81 -0.60 2.72 16 12 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 13 H 0.09 2.02 7.91 -52.48 -0.42 1.61 16 14 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 15 N -0.77 -18.61 10.97 55.56 0.61 -18.00 16 16 Si 0.91 17.32 29.60 -169.99 -5.03 12.29 16 17 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 20 C -0.24 -5.80 9.73 -39.27 -0.38 -6.18 16 21 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 22 C 0.17 2.54 7.01 -156.38 -1.10 1.45 16 23 N -0.37 -5.47 11.87 30.90 0.37 -5.11 16 24 O 0.08 0.97 11.31 18.09 0.20 1.18 16 25 C 0.17 1.78 8.51 -13.06 -0.11 1.67 16 26 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 27 N -0.47 -6.44 11.55 -9.87 -0.11 -6.55 16 28 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.24 5.65 -51.93 -0.29 0.94 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.40 7.04 6.36 -40.82 -0.26 6.78 16 34 H 0.09 1.76 6.37 -52.49 -0.33 1.42 16 35 H 0.12 3.01 6.17 -52.49 -0.32 2.69 16 36 H 0.29 6.22 8.29 -40.82 -0.34 5.89 16 37 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 38 H 0.10 2.29 7.63 -52.48 -0.40 1.89 16 39 H 0.10 0.26 8.14 -51.92 -0.42 -0.17 16 40 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -29.42 348.02 -7.90 -37.31 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -4.92 Total: 12.23 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -4.05 Total: -12.50 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.58 Total: -43.13 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.28 Total: -11.44 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.42 -7.90 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361376369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.472 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds