Wall clock time and date at job start Tue Mar 31 2020 11:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47340 * 2 1 4 4 H 1.08997 * 109.47083 * 54.99768 * 3 2 1 5 5 N 1.46500 * 109.47093 * 295.00002 * 3 2 1 6 6 C 1.34776 * 120.00315 * 84.99517 * 5 3 2 7 7 O 1.21585 * 119.99909 * 0.02562 * 6 5 3 8 8 C 1.47641 * 120.00446 * 180.02562 * 6 5 3 9 9 C 1.40018 * 119.89390 * 359.72590 * 8 6 5 10 10 C 1.36316 * 120.10644 * 179.75786 * 9 8 6 11 11 C 1.40888 * 119.88962 * 0.52172 * 10 9 8 12 12 C 1.41106 * 120.09922 * 179.71665 * 11 10 9 13 13 H 1.08008 * 119.99762 * 155.08347 * 12 11 10 14 14 C 1.40225 * 120.00098 * 335.07741 * 12 11 10 15 15 N 1.30641 * 120.00352 * 342.21464 * 14 12 11 16 16 Si 1.86807 * 119.99738 * 162.20644 * 14 12 11 17 17 H 1.48500 * 109.46862 * 94.66837 * 16 14 12 18 18 H 1.48503 * 109.46796 * 214.66560 * 16 14 12 19 19 H 1.48499 * 109.47249 * 334.66718 * 16 14 12 20 20 C 1.40883 * 119.79296 * 359.73328 * 11 10 9 21 21 C 1.36315 * 119.89439 * 0.02562 * 20 11 10 22 22 C 1.50703 * 109.47095 * 175.00202 * 3 2 1 23 23 N 1.29936 * 126.28691 * 74.68803 * 22 3 2 24 24 O 1.21307 * 110.25014 * 179.84657 * 23 22 3 25 25 C 1.33645 * 109.80881 * 0.41920 * 24 23 22 26 26 C 1.50694 * 126.54995 * 179.72309 * 25 24 23 27 27 N 1.31132 * 106.89746 * 359.74050 * 25 24 23 28 28 H 1.09004 * 109.46873 * 300.00219 * 1 2 3 29 29 H 1.09001 * 109.47336 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47263 * 60.00228 * 1 2 3 31 31 H 1.09003 * 109.46362 * 119.99916 * 2 1 3 32 32 H 1.08995 * 109.46769 * 239.99666 * 2 1 3 33 33 H 0.97006 * 120.00343 * 265.00512 * 5 3 2 34 34 H 1.07997 * 119.94204 * 0.02631 * 9 8 6 35 35 H 1.08001 * 120.05208 * 180.23445 * 10 9 8 36 36 H 0.97000 * 120.00594 * 180.02562 * 15 14 12 37 37 H 1.08008 * 120.04970 * 179.97438 * 20 11 10 38 38 H 1.08007 * 119.94795 * 179.97438 * 21 20 11 39 39 H 1.09007 * 109.46815 * 270.02174 * 26 25 24 40 40 H 1.08994 * 109.47303 * 30.02452 * 26 25 24 41 41 H 1.09003 * 109.47391 * 150.02859 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3412 2.6325 -0.4319 8 6 0.0444 3.3239 -2.6288 9 6 0.9423 3.3643 -3.7024 10 6 0.5842 3.9678 -4.8710 11 6 -0.6877 4.5612 -4.9937 12 6 -1.0608 5.1924 -6.1993 13 1 -2.1049 5.2861 -6.4592 14 6 -0.0760 5.6981 -7.0600 15 7 1.1352 5.9057 -6.6164 16 14 -0.4958 6.0746 -8.8409 17 1 -0.8545 7.5096 -8.9721 18 1 0.6787 5.7773 -9.6998 19 1 -1.6452 5.2361 -9.2665 20 6 -1.5857 4.5227 -3.9089 21 6 -1.2205 3.9126 -2.7459 22 6 3.5420 1.4442 0.1238 23 7 4.3910 1.1393 -0.8114 24 8 5.5266 1.2414 -0.3971 25 6 5.5089 1.6242 0.8832 26 6 6.7071 1.8591 1.7664 27 7 4.2495 1.7561 1.2242 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5139 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 2.2720 2.1230 -1.9979 34 1 1.9186 2.9127 -3.6058 35 1 1.2761 3.9952 -5.6998 36 1 1.8164 6.2559 -7.2116 37 1 -2.5617 4.9766 -3.9983 38 1 -1.9081 3.8829 -1.9135 39 1 6.9725 0.9311 2.2730 40 1 7.5471 2.1938 1.1577 41 1 6.4685 2.6221 2.5073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361376369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:20 Heat of formation + Delta-G solvation = 21.428314 kcal Electronic energy + Delta-G solvation = -25369.835962 eV Core-core repulsion = 21637.616579 eV Total energy + Delta-G solvation = -3732.219384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.76122 -41.13281 -39.17851 -37.72732 -36.30103 -35.70325 -34.20529 -33.60843 -31.82402 -31.33333 -29.79358 -28.82180 -27.42435 -24.85251 -23.95845 -23.47776 -22.86852 -21.82744 -21.21450 -19.39667 -19.29248 -19.07150 -18.10689 -17.52890 -17.12360 -16.51404 -15.94023 -15.77648 -15.53354 -15.46971 -15.00695 -14.59197 -14.40060 -14.18124 -14.14141 -14.01122 -13.79748 -13.67845 -13.26672 -13.07842 -12.97243 -12.85713 -12.66817 -12.59179 -12.42865 -12.36028 -12.21319 -11.95738 -11.79394 -11.40947 -11.14206 -11.03197 -10.71299 -10.21517 -9.61607 -9.45108 -8.82202 -6.51141 0.07848 0.39742 0.99218 1.12002 1.36861 1.40880 1.53846 1.86892 2.04490 2.07113 2.15934 2.49158 2.75600 3.01493 3.65068 3.68900 3.82241 4.03583 4.14110 4.24046 4.32590 4.42602 4.44667 4.52111 4.61228 4.66609 4.74297 4.89197 4.90405 4.94498 4.99839 5.05333 5.12046 5.13550 5.26002 5.35068 5.40357 5.55427 5.77772 5.89729 5.96509 6.19162 6.50160 6.52905 6.74031 6.85298 7.06333 7.32929 8.13184 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.003099 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.024951 B = 9031.721340 C =10276.674046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.242 3.758 4 H 0.101 0.899 5 N -0.724 5.724 6 C 0.581 3.419 7 O -0.581 6.581 8 C -0.294 4.294 9 C -0.057 4.057 10 C -0.197 4.197 11 C 0.103 3.897 12 C -0.471 4.471 13 H 0.088 0.912 14 C 0.037 3.963 15 N -0.799 5.799 16 Si 0.988 3.012 17 H -0.260 1.260 18 H -0.262 1.262 19 H -0.256 1.256 20 C -0.252 4.252 21 C -0.027 4.027 22 C 0.156 3.844 23 N -0.391 5.391 24 O 0.082 5.918 25 C 0.192 3.808 26 C -0.060 4.060 27 N -0.504 5.504 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.404 0.596 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.297 0.703 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.752 -8.195 9.925 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.135 3.865 4 H 0.119 0.881 5 N -0.377 5.377 6 C 0.376 3.624 7 O -0.463 6.463 8 C -0.299 4.299 9 C -0.076 4.076 10 C -0.216 4.216 11 C 0.100 3.900 12 C -0.498 4.498 13 H 0.106 0.894 14 C -0.182 4.182 15 N -0.422 5.422 16 Si 0.808 3.192 17 H -0.185 1.185 18 H -0.187 1.187 19 H -0.180 1.180 20 C -0.272 4.272 21 C -0.046 4.046 22 C -0.118 4.118 23 N -0.098 5.098 24 O 0.021 5.979 25 C -0.028 4.028 26 C -0.118 4.118 27 N -0.238 5.238 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.240 0.760 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.879 -8.271 10.022 17.606 hybrid contribution 0.159 0.471 -1.031 1.144 sum 12.038 -7.800 8.991 16.929 Atomic orbital electron populations 1.21706 0.94168 1.01526 1.02035 1.21865 0.97254 0.93153 1.03290 1.19044 0.82397 0.96070 0.88967 0.88094 1.45799 1.17216 1.58955 1.15773 1.18231 0.80506 0.76315 0.87396 1.90637 1.52257 1.62016 1.41424 1.19111 0.98374 1.17025 0.95349 1.20661 0.96993 0.96947 0.92956 1.20976 0.98874 1.03725 0.98068 1.18128 0.91846 0.87837 0.92231 1.20140 0.95468 1.31442 1.02767 0.89402 1.26971 0.93779 0.92274 1.05211 1.69767 1.04376 1.28898 1.39169 0.85092 0.79600 0.79597 0.74939 1.18461 1.18658 1.17960 1.20880 1.01604 1.10466 0.94225 1.20500 0.94357 0.93342 0.96399 1.25756 0.99513 1.00295 0.86196 1.74591 0.90510 1.21330 1.23409 1.85272 1.23337 1.62268 1.27003 1.29989 0.96684 0.92069 0.84020 1.20822 0.88089 1.06564 0.96329 1.71878 1.02638 1.22357 1.26975 0.92778 0.91157 0.94405 0.89258 0.91277 0.76004 0.87177 0.87085 0.89180 0.87456 0.87360 0.85406 0.85828 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.51 71.98 0.61 -3.49 16 2 C -0.12 -3.18 5.59 30.59 0.17 -3.01 16 3 C 0.24 7.61 2.80 44.25 0.12 7.73 16 4 H 0.10 3.47 7.58 -2.39 -0.02 3.45 16 5 N -0.72 -26.01 4.97 -449.17 -2.23 -28.24 16 6 C 0.58 24.80 6.33 86.73 0.55 25.35 16 7 O -0.58 -26.46 13.46 -3.98 -0.05 -26.52 16 8 C -0.29 -13.74 5.89 -19.93 -0.12 -13.85 16 9 C -0.06 -2.61 9.47 22.25 0.21 -2.40 16 10 C -0.20 -10.05 8.63 22.47 0.19 -9.85 16 11 C 0.10 5.41 5.57 -21.28 -0.12 5.29 16 12 C -0.47 -23.97 9.04 23.46 0.21 -23.76 16 13 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 14 C 0.04 1.72 5.13 85.35 0.44 2.16 16 15 N -0.80 -38.83 10.97 21.87 0.24 -38.59 16 16 Si 0.99 35.05 29.60 68.60 2.03 37.09 16 17 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 18 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 19 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 20 C -0.25 -12.58 9.73 22.47 0.22 -12.36 16 21 C -0.03 -1.29 9.52 22.25 0.21 -1.08 16 22 C 0.16 4.53 7.01 138.47 0.97 5.50 16 23 N -0.39 -11.06 11.87 -60.33 -0.72 -11.78 16 24 O 0.08 1.85 11.31 74.81 0.85 2.70 16 25 C 0.19 3.50 8.51 88.38 0.75 4.25 16 26 C -0.06 -0.31 10.51 71.23 0.75 0.44 16 27 N -0.50 -13.00 11.55 -303.21 -3.50 -16.50 16 28 H 0.05 1.69 7.84 -2.38 -0.02 1.67 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.36 5.65 -2.39 -0.01 1.35 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.40 14.07 6.36 -92.70 -0.59 13.48 16 34 H 0.11 4.45 6.37 -2.91 -0.02 4.43 16 35 H 0.11 5.76 6.17 -2.91 -0.02 5.74 16 36 H 0.30 12.82 8.29 -92.71 -0.77 12.06 16 37 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 38 H 0.11 4.98 7.63 -2.91 -0.02 4.96 16 39 H 0.13 0.10 8.14 -2.38 -0.02 0.08 16 40 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -65.17 348.02 2.28 -62.89 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.49 Total: 38.03 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 5.18 Total: -19.08 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -6.21 Total: -95.11 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.79 Total: -23.82 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.09 kcal Total: -65.17 2.28 -62.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361376369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.317 kcal (2) G-P(sol) polarization free energy of solvation -65.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds