Wall clock time and date at job start Tue Mar 31 2020 11:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00355 * 2 1 4 4 C 1.50700 * 109.47321 * 275.00687 * 3 2 1 5 5 N 1.30502 * 125.64425 * 270.27108 * 4 3 2 6 6 C 1.34127 * 109.25683 * 180.14781 * 5 4 3 7 7 C 1.34672 * 108.01948 * 359.61488 * 6 5 4 8 8 N 1.35041 * 125.65474 * 89.99233 * 4 3 2 9 9 C 1.46499 * 126.39624 * 0.02562 * 8 4 3 10 10 S 1.65606 * 119.99813 * 180.02562 * 2 1 3 11 11 O 1.42098 * 104.27678 * 26.07225 * 10 2 1 12 12 O 1.42100 * 104.27462 * 153.92673 * 10 2 1 13 13 C 1.81397 * 104.44792 * 269.99951 * 10 2 1 14 14 C 1.52995 * 109.46934 * 180.02562 * 13 10 2 15 15 C 1.53001 * 109.47087 * 299.99702 * 14 13 10 16 16 C 1.53003 * 109.47335 * 59.99835 * 14 13 10 17 17 C 1.50700 * 109.47477 * 180.02562 * 14 13 10 18 18 H 1.08009 * 119.99292 * 359.97438 * 17 14 13 19 19 C 1.37869 * 120.00370 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00414 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99879 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47011 * 60.00283 * 21 19 17 23 23 H 1.48500 * 109.47015 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47201 * 299.99821 * 21 19 17 25 25 H 1.09004 * 109.47028 * 89.99611 * 1 2 3 26 26 H 1.08996 * 109.47177 * 209.99892 * 1 2 3 27 27 H 1.08997 * 109.46862 * 329.99742 * 1 2 3 28 28 H 1.08994 * 109.47118 * 155.00128 * 3 2 1 29 29 H 1.09006 * 109.46379 * 35.00018 * 3 2 1 30 30 H 1.08002 * 125.99481 * 179.88589 * 6 5 4 31 31 H 1.07997 * 126.59503 * 180.24939 * 7 6 5 32 32 H 1.09002 * 109.47096 * 269.97154 * 9 8 4 33 33 H 1.08994 * 109.47272 * 29.97187 * 9 8 4 34 34 H 1.09002 * 109.47111 * 149.97482 * 9 8 4 35 35 H 1.08999 * 109.47070 * 299.99608 * 13 10 2 36 36 H 1.08999 * 109.47380 * 60.00208 * 13 10 2 37 37 H 1.09002 * 109.47202 * 60.00659 * 15 14 13 38 38 H 1.09001 * 109.47475 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.47173 * 300.00066 * 15 14 13 40 40 H 1.09000 * 109.46970 * 60.00340 * 16 14 13 41 41 H 1.09007 * 109.46865 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47033 * 299.99733 * 16 14 13 43 43 H 0.96998 * 120.00292 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7658 -1.4154 5 7 3.3264 1.4843 -2.2239 6 6 3.1253 2.1013 -3.3977 7 6 1.9676 2.7844 -3.3163 8 7 1.4699 2.5719 -2.0590 9 6 0.2247 3.1175 -1.5132 10 16 2.2930 -1.4342 -0.0006 11 8 1.3970 -2.3559 -0.6063 12 8 3.5395 -1.1189 -0.6058 13 6 2.5193 -1.8270 1.7558 14 6 3.2819 -3.1466 1.8891 15 6 2.4860 -4.2659 1.2147 16 6 4.6494 -3.0158 1.2154 17 6 3.4694 -3.4733 3.3483 18 1 3.0835 -2.8060 4.1049 19 6 4.1334 -4.6238 3.7174 20 7 4.6027 -5.4366 2.7961 21 14 4.3664 -5.0283 5.5262 22 1 3.0391 -5.1547 6.1801 23 1 5.1053 -6.3099 5.6556 24 1 5.1394 -3.9424 6.1807 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 3.1858 1.1176 0.4343 29 1 1.6502 2.0042 0.5895 30 1 3.7754 2.0546 -4.2589 31 1 1.5180 3.3843 -4.0937 32 1 -0.5948 2.4289 -1.7192 33 1 0.3268 3.2488 -0.4360 34 1 0.0154 4.0808 -1.9784 35 1 3.0867 -1.0298 2.2362 36 1 1.5451 -1.9198 2.2358 37 1 2.3501 -4.0299 0.1592 38 1 3.0295 -5.2060 1.3093 39 1 1.5119 -4.3591 1.6947 40 1 5.2163 -2.2185 1.6960 41 1 5.1928 -3.9559 1.3109 42 1 4.5133 -2.7799 0.1600 43 1 5.0695 -6.2462 3.0558 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364772696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:29 Heat of formation + Delta-G solvation = 4.140162 kcal Electronic energy + Delta-G solvation = -25777.695102 eV Core-core repulsion = 22180.169999 eV Total energy + Delta-G solvation = -3597.525103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.06331 -36.48382 -36.39478 -36.16679 -35.10708 -34.05396 -31.62557 -30.55079 -27.70675 -26.82471 -26.60110 -25.65823 -25.20017 -24.63672 -21.36158 -20.08879 -19.40972 -18.36527 -17.35230 -17.10134 -16.35882 -15.91984 -15.47736 -15.34622 -14.77748 -14.64167 -14.28528 -14.10086 -13.60399 -13.24300 -13.17439 -12.98225 -12.92424 -12.75665 -12.60170 -12.44654 -12.12293 -11.89971 -11.42719 -11.20901 -11.03021 -10.99686 -10.88080 -10.62708 -10.34650 -10.20223 -10.06310 -9.78469 -9.60766 -9.60047 -9.56955 -9.09930 -8.63880 -8.41009 -8.36526 -5.99798 -4.12138 0.85567 1.96171 2.68530 3.01486 3.28810 3.34446 3.35641 3.40379 4.32993 4.37979 4.43939 4.50447 4.64554 4.70001 4.79071 4.86108 5.02595 5.15888 5.25286 5.34949 5.41890 5.45153 5.61072 5.67939 5.71895 5.75197 5.95746 6.21947 6.42172 6.57333 6.75080 6.76994 6.85313 6.97332 7.10879 7.11558 7.36879 7.55601 7.70984 8.02929 8.13957 8.20659 8.36925 8.85989 9.53042 11.01383 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.003710 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.048543 B = 7544.353672 C = 7731.871734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.007 6.007 3 C 0.212 3.788 4 C 0.185 3.815 5 N -0.452 5.452 6 C -0.030 4.030 7 C -0.063 4.063 8 N -0.458 5.458 9 C 0.070 3.930 10 S 2.585 3.415 11 O -0.962 6.962 12 O -0.932 6.932 13 C -0.584 4.584 14 C 0.082 3.918 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.896 3.104 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.027 0.973 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.094 0.906 42 H 0.030 0.970 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 17.858 -6.553 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.843 5.843 3 C 0.084 3.916 4 C -0.079 4.079 5 N -0.170 5.170 6 C -0.179 4.179 7 C -0.196 4.196 8 N -0.142 5.142 9 C -0.073 4.073 10 S 2.683 3.317 11 O -0.953 6.953 12 O -0.922 6.922 13 C -0.717 4.717 14 C 0.080 3.920 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.723 3.277 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.046 0.954 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.112 0.888 42 H 0.048 0.952 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.282 16.798 -7.115 20.468 hybrid contribution -0.872 0.580 1.286 1.658 sum -10.154 17.378 -5.828 20.954 Atomic orbital electron populations 1.21448 0.79171 1.02898 1.01668 1.58035 1.14793 1.21295 1.90128 1.19418 0.98927 0.85726 0.87554 1.23829 0.88649 0.97086 0.98323 1.70477 1.23698 1.21090 1.01728 1.22425 0.97508 1.00379 0.97592 1.22675 0.99483 1.08945 0.88505 1.45345 1.18991 1.37928 1.11911 1.22059 0.84634 0.99907 1.00669 1.06183 0.74081 0.72144 0.79275 1.93530 1.65478 1.61108 1.75160 1.93640 1.42312 1.81922 1.74352 1.30593 1.09659 1.10279 1.21151 1.17923 0.90887 0.85411 0.97780 1.22269 0.99429 1.03873 0.96501 1.22263 0.99368 1.03738 0.96704 1.20905 1.36585 1.06779 0.89933 0.92411 1.24935 0.95229 0.96061 0.97485 1.69796 1.37484 1.12625 1.32204 0.86606 0.78234 0.77678 0.85147 1.20327 1.21189 1.20262 0.93184 0.90488 0.91543 0.86706 0.89219 0.81381 0.81058 0.90507 0.89519 0.89728 0.86448 0.86700 0.95398 0.88668 0.94615 0.94437 0.88769 0.95152 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.24 59.85 0.61 1.64 16 2 N -1.01 -14.33 3.10 -123.05 -0.38 -14.71 16 3 C 0.21 2.65 5.58 -5.19 -0.03 2.62 16 4 C 0.18 2.65 7.48 -155.42 -1.16 1.49 16 5 N -0.45 -7.88 11.25 -10.81 -0.12 -8.00 16 6 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 7 C -0.06 -0.68 11.58 -16.56 -0.19 -0.88 16 8 N -0.46 -5.00 3.15 -121.28 -0.38 -5.38 16 9 C 0.07 0.42 10.97 59.85 0.66 1.07 16 10 S 2.59 50.08 4.36 -107.50 -0.47 49.62 16 11 O -0.96 -21.08 14.71 -57.54 -0.85 -21.92 16 12 O -0.93 -20.66 14.60 -57.54 -0.84 -21.50 16 13 C -0.58 -11.49 5.12 37.15 0.19 -11.30 16 14 C 0.08 2.03 0.52 -155.66 -0.08 1.94 16 15 C -0.16 -4.10 7.77 37.16 0.29 -3.81 16 16 C -0.16 -4.11 7.78 37.16 0.29 -3.82 16 17 C -0.50 -13.29 8.01 -34.44 -0.28 -13.57 16 18 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.74 5.15 -17.82 -0.09 1.64 16 20 N -0.88 -24.39 9.35 55.43 0.52 -23.88 16 21 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 27 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 28 H 0.11 1.50 7.61 -51.93 -0.40 1.11 16 29 H 0.09 0.71 6.89 -51.93 -0.36 0.36 16 30 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.38 7.04 -51.93 -0.37 0.01 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 37 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 38 H 0.09 2.57 6.07 -51.93 -0.32 2.26 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 42 H 0.03 0.73 5.46 -51.93 -0.28 0.45 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -36.33 352.95 -8.71 -45.04 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.48 Total: 3.31 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.01 Total: -23.59 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.37 Total: -51.97 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -1.69 Total: -43.43 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 50.08 SS G_CDS: -0.47 Total: 49.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.33 -8.71 -45.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364772696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.178 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds