Wall clock time and date at job start Tue Mar 31 2020 11:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00355 * 2 1 4 4 C 1.50700 * 109.47321 * 275.00687 * 3 2 1 5 5 N 1.30502 * 125.64425 * 270.27108 * 4 3 2 6 6 C 1.34127 * 109.25683 * 180.14781 * 5 4 3 7 7 C 1.34672 * 108.01948 * 359.61488 * 6 5 4 8 8 N 1.35041 * 125.65474 * 89.99233 * 4 3 2 9 9 C 1.46499 * 126.39624 * 0.02562 * 8 4 3 10 10 S 1.65606 * 119.99813 * 180.02562 * 2 1 3 11 11 O 1.42098 * 104.27678 * 26.07225 * 10 2 1 12 12 O 1.42100 * 104.27462 * 153.92673 * 10 2 1 13 13 C 1.81397 * 104.44792 * 269.99951 * 10 2 1 14 14 C 1.52995 * 109.46934 * 180.02562 * 13 10 2 15 15 C 1.53001 * 109.47087 * 299.99702 * 14 13 10 16 16 C 1.53003 * 109.47335 * 59.99835 * 14 13 10 17 17 C 1.50700 * 109.47477 * 180.02562 * 14 13 10 18 18 H 1.08009 * 119.99292 * 359.97438 * 17 14 13 19 19 C 1.37869 * 120.00370 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00414 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99879 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47011 * 60.00283 * 21 19 17 23 23 H 1.48500 * 109.47015 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47201 * 299.99821 * 21 19 17 25 25 H 1.09004 * 109.47028 * 89.99611 * 1 2 3 26 26 H 1.08996 * 109.47177 * 209.99892 * 1 2 3 27 27 H 1.08997 * 109.46862 * 329.99742 * 1 2 3 28 28 H 1.08994 * 109.47118 * 155.00128 * 3 2 1 29 29 H 1.09006 * 109.46379 * 35.00018 * 3 2 1 30 30 H 1.08002 * 125.99481 * 179.88589 * 6 5 4 31 31 H 1.07997 * 126.59503 * 180.24939 * 7 6 5 32 32 H 1.09002 * 109.47096 * 269.97154 * 9 8 4 33 33 H 1.08994 * 109.47272 * 29.97187 * 9 8 4 34 34 H 1.09002 * 109.47111 * 149.97482 * 9 8 4 35 35 H 1.08999 * 109.47070 * 299.99608 * 13 10 2 36 36 H 1.08999 * 109.47380 * 60.00208 * 13 10 2 37 37 H 1.09002 * 109.47202 * 60.00659 * 15 14 13 38 38 H 1.09001 * 109.47475 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.47173 * 300.00066 * 15 14 13 40 40 H 1.09000 * 109.46970 * 60.00340 * 16 14 13 41 41 H 1.09007 * 109.46865 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47033 * 299.99733 * 16 14 13 43 43 H 0.96998 * 120.00292 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7658 -1.4154 5 7 3.3264 1.4843 -2.2239 6 6 3.1253 2.1013 -3.3977 7 6 1.9676 2.7844 -3.3163 8 7 1.4699 2.5719 -2.0590 9 6 0.2247 3.1175 -1.5132 10 16 2.2930 -1.4342 -0.0006 11 8 1.3970 -2.3559 -0.6063 12 8 3.5395 -1.1189 -0.6058 13 6 2.5193 -1.8270 1.7558 14 6 3.2819 -3.1466 1.8891 15 6 2.4860 -4.2659 1.2147 16 6 4.6494 -3.0158 1.2154 17 6 3.4694 -3.4733 3.3483 18 1 3.0835 -2.8060 4.1049 19 6 4.1334 -4.6238 3.7174 20 7 4.6027 -5.4366 2.7961 21 14 4.3664 -5.0283 5.5262 22 1 3.0391 -5.1547 6.1801 23 1 5.1053 -6.3099 5.6556 24 1 5.1394 -3.9424 6.1807 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 3.1858 1.1176 0.4343 29 1 1.6502 2.0042 0.5895 30 1 3.7754 2.0546 -4.2589 31 1 1.5180 3.3843 -4.0937 32 1 -0.5948 2.4289 -1.7192 33 1 0.3268 3.2488 -0.4360 34 1 0.0154 4.0808 -1.9784 35 1 3.0867 -1.0298 2.2362 36 1 1.5451 -1.9198 2.2358 37 1 2.3501 -4.0299 0.1592 38 1 3.0295 -5.2060 1.3093 39 1 1.5119 -4.3591 1.6947 40 1 5.2163 -2.2185 1.6960 41 1 5.1928 -3.9559 1.3109 42 1 4.5133 -2.7799 0.1600 43 1 5.0695 -6.2462 3.0558 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364772696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:28 Heat of formation + Delta-G solvation = -21.307884 kcal Electronic energy + Delta-G solvation = -25778.798612 eV Core-core repulsion = 22180.169999 eV Total energy + Delta-G solvation = -3598.628613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.94615 -38.12913 -38.07495 -37.39197 -36.71757 -34.83778 -33.61400 -31.47177 -28.53947 -28.33416 -27.68837 -27.45172 -27.23768 -25.66442 -22.24054 -21.31339 -21.03379 -19.64757 -18.76749 -18.02923 -17.80943 -17.42720 -16.87577 -16.67332 -16.43203 -15.55833 -15.46912 -15.13604 -14.98280 -14.62382 -14.41371 -14.35448 -13.99007 -13.91211 -13.78547 -13.60261 -13.30281 -13.11580 -13.07402 -12.83410 -12.77431 -12.65587 -12.45803 -12.42391 -12.14041 -12.10054 -11.92489 -11.55513 -11.35969 -10.77172 -10.63693 -10.46685 -10.39862 -10.14700 -9.33840 -8.01048 -6.20486 -0.62503 1.07131 1.46783 1.47323 1.54695 1.83006 1.98241 2.32545 2.45897 2.99953 3.20728 3.30161 3.51161 3.73576 3.97822 4.03815 4.10721 4.17899 4.36264 4.41076 4.51271 4.60688 4.62525 4.64468 4.75353 4.78388 4.85922 4.87389 4.92565 4.96452 5.01907 5.08962 5.37304 5.39517 5.49022 5.59692 5.65283 5.89116 5.96800 6.12066 6.31736 6.34764 6.84422 7.28421 7.47932 8.98729 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.003710 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.048543 B = 7544.353672 C = 7731.871734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.997 5.997 3 C 0.205 3.795 4 C 0.163 3.837 5 N -0.517 5.517 6 C -0.075 4.075 7 C -0.039 4.039 8 N -0.451 5.451 9 C 0.057 3.943 10 S 2.599 3.401 11 O -0.995 6.995 12 O -0.969 6.969 13 C -0.583 4.583 14 C 0.069 3.931 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.517 4.517 18 H 0.066 0.934 19 C 0.016 3.984 20 N -0.910 5.910 21 Si 0.956 3.044 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.271 1.271 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.174 0.826 31 H 0.214 0.786 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.678 20.698 -5.356 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.836 5.836 3 C 0.078 3.922 4 C -0.101 4.101 5 N -0.237 5.237 6 C -0.223 4.223 7 C -0.174 4.174 8 N -0.133 5.133 9 C -0.083 4.083 10 S 2.697 3.303 11 O -0.985 6.985 12 O -0.959 6.959 13 C -0.715 4.715 14 C 0.067 3.933 15 C -0.216 4.216 16 C -0.215 4.215 17 C -0.556 4.556 18 H 0.084 0.916 19 C -0.183 4.183 20 N -0.548 5.548 21 Si 0.782 3.218 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.196 1.196 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.162 0.838 30 H 0.191 0.809 31 H 0.230 0.770 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.843 19.645 -5.902 23.686 hybrid contribution -0.145 -0.204 0.826 0.863 sum -11.988 19.441 -5.077 23.397 Atomic orbital electron populations 1.21808 0.76756 1.05355 1.02323 1.57532 1.16118 1.20120 1.89789 1.19766 0.99130 0.85719 0.87607 1.23970 0.89135 0.98208 0.98814 1.70355 1.26384 1.23281 1.03647 1.22773 0.99747 1.02284 0.97492 1.23245 0.97977 1.07075 0.89099 1.45601 1.19674 1.36578 1.11479 1.22510 0.82477 1.01168 1.02193 1.05378 0.73359 0.72859 0.78698 1.93476 1.66008 1.63285 1.75763 1.93593 1.44520 1.82728 1.75010 1.30480 1.10486 1.08251 1.22325 1.17918 0.90824 0.87678 0.96885 1.22190 0.99427 1.03193 0.96775 1.22182 1.00050 1.02361 0.96953 1.21276 1.36395 1.06945 0.91026 0.91572 1.25719 0.95151 0.96151 1.01317 1.69955 1.38059 1.12871 1.33961 0.85643 0.78346 0.77276 0.80542 1.19484 1.21486 1.19581 0.93523 0.90801 0.86352 0.88117 0.83777 0.80888 0.76970 0.89496 0.87402 0.87129 0.84378 0.84437 0.95392 0.91165 0.94000 0.94115 0.91284 0.95204 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.50 10.24 127.77 1.31 2.81 16 2 N -1.00 -26.16 3.10 -543.22 -1.68 -27.84 16 3 C 0.20 4.62 5.58 85.63 0.48 5.09 16 4 C 0.16 4.43 7.48 138.13 1.03 5.46 16 5 N -0.52 -18.31 11.25 -188.13 -2.12 -20.43 16 6 C -0.07 -2.08 11.87 83.52 0.99 -1.09 16 7 C -0.04 -0.76 11.58 83.09 0.96 0.20 16 8 N -0.45 -8.43 3.15 -537.61 -1.69 -10.12 16 9 C 0.06 0.39 10.97 127.77 1.40 1.79 16 10 S 2.60 100.00 4.36 -56.49 -0.25 99.76 16 11 O -1.00 -43.84 14.71 -127.65 -1.88 -45.72 16 12 O -0.97 -44.05 14.60 -127.65 -1.86 -45.91 16 13 C -0.58 -22.27 5.12 71.98 0.37 -21.90 16 14 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 15 C -0.16 -8.10 7.77 71.98 0.56 -7.54 16 16 C -0.16 -8.17 7.78 71.98 0.56 -7.61 16 17 C -0.52 -27.12 8.01 25.60 0.21 -26.92 16 18 H 0.07 3.27 7.74 -2.91 -0.02 3.25 16 19 C 0.02 0.85 5.15 84.65 0.44 1.29 16 20 N -0.91 -51.42 9.35 21.44 0.20 -51.22 16 21 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 27 H 0.12 0.94 7.94 -2.39 -0.02 0.92 16 28 H 0.10 2.54 7.61 -2.39 -0.02 2.53 16 29 H 0.14 1.57 6.89 -2.38 -0.02 1.56 16 30 H 0.17 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.30 7.04 -2.39 -0.02 0.28 16 34 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 36 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 37 H 0.03 1.39 5.47 -2.39 -0.01 1.37 16 38 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 3.90 6.07 -2.38 -0.01 3.88 16 42 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 43 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -83.16 352.95 2.02 -81.14 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 1.00 Total: 21.08 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 8.28 Total: -45.03 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -5.29 Total: -109.62 kcal Atomic # 8 Polarization: -87.89 SS G_CDS: -3.74 Total: -91.63 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 100.00 SS G_CDS: -0.25 Total: 99.76 kcal Total: -83.16 2.02 -81.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364772696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.832 kcal (2) G-P(sol) polarization free energy of solvation -83.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds