Wall clock time and date at job start Tue Mar 31 2020 11:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00369 * 2 1 4 4 C 1.50700 * 109.47077 * 274.99842 * 3 2 1 5 5 C 1.39874 * 126.03743 * 90.02181 * 4 3 2 6 6 N 1.30833 * 108.20312 * 179.97438 * 5 4 3 7 7 N 1.40081 * 108.20662 * 0.02562 * 6 5 4 8 8 C 1.46499 * 126.04143 * 179.97438 * 7 6 5 9 9 C 1.34953 * 107.92300 * 359.75460 * 7 6 5 10 10 S 1.65604 * 119.99676 * 179.97438 * 2 1 3 11 11 O 1.42104 * 104.27530 * 206.07057 * 10 2 1 12 12 O 1.42101 * 104.27662 * 333.92588 * 10 2 1 13 13 C 1.81397 * 104.44849 * 90.00088 * 10 2 1 14 14 C 1.53006 * 109.47109 * 180.02562 * 13 10 2 15 15 C 1.53000 * 109.46930 * 300.00014 * 14 13 10 16 16 C 1.53001 * 109.46962 * 59.99791 * 14 13 10 17 17 C 1.50704 * 109.47062 * 179.97438 * 14 13 10 18 18 H 1.07994 * 119.99990 * 0.83950 * 17 14 13 19 19 C 1.37874 * 119.99658 * 180.83650 * 17 14 13 20 20 N 1.31521 * 119.99742 * 194.57976 * 19 17 14 21 21 Si 1.86803 * 120.00312 * 14.57915 * 19 17 14 22 22 H 1.48495 * 109.47074 * 84.45297 * 21 19 17 23 23 H 1.48499 * 109.47110 * 204.45483 * 21 19 17 24 24 H 1.48501 * 109.46939 * 324.45136 * 21 19 17 25 25 H 1.09002 * 109.46796 * 270.00071 * 1 2 3 26 26 H 1.09002 * 109.46814 * 29.99977 * 1 2 3 27 27 H 1.08993 * 109.47436 * 149.99920 * 1 2 3 28 28 H 1.09003 * 109.46882 * 34.99852 * 3 2 1 29 29 H 1.08996 * 109.47201 * 154.99989 * 3 2 1 30 30 H 1.07999 * 125.89855 * 0.02562 * 5 4 3 31 31 H 1.09000 * 109.47260 * 89.97149 * 8 7 6 32 32 H 1.09007 * 109.47212 * 209.97841 * 8 7 6 33 33 H 1.09006 * 109.47040 * 329.97033 * 8 7 6 34 34 H 1.08007 * 126.12614 * 180.23685 * 9 7 6 35 35 H 1.09004 * 109.47445 * 299.99713 * 13 10 2 36 36 H 1.08998 * 109.47737 * 60.00014 * 13 10 2 37 37 H 1.09002 * 109.47397 * 70.23166 * 15 14 13 38 38 H 1.09002 * 109.46855 * 190.23550 * 15 14 13 39 39 H 1.08999 * 109.47059 * 310.22875 * 15 14 13 40 40 H 1.08994 * 109.47128 * 60.00358 * 16 14 13 41 41 H 1.09001 * 109.47053 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.47414 * 300.00251 * 16 14 13 43 43 H 0.97000 * 119.99591 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 6 1.4446 2.6007 -2.0896 6 7 1.9095 2.8121 -3.2942 7 7 3.1184 2.1167 -3.4250 8 6 3.9689 2.0832 -4.6174 9 6 3.3638 1.4869 -2.2569 10 16 2.2929 -1.4342 0.0006 11 8 3.5395 -1.1190 0.6057 12 8 1.3969 -2.3559 0.6063 13 6 2.5192 -1.8270 -1.7558 14 6 3.2807 -3.1474 -1.8891 15 6 4.6481 -3.0178 -1.2152 16 6 2.4838 -4.2660 -1.2149 17 6 3.4682 -3.4740 -3.3484 18 1 3.0947 -2.7998 -4.1049 19 6 4.1165 -4.6334 -3.7175 20 7 4.5352 -4.7874 -4.9547 21 14 4.4004 -5.9857 -2.4603 22 1 3.1915 -6.8438 -2.3749 23 1 5.5643 -6.8098 -2.8741 24 1 4.6710 -5.3782 -1.1325 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6502 2.0042 0.5894 29 1 3.1858 1.1176 0.4343 30 1 0.5272 3.0024 -1.6854 31 1 4.6903 2.8991 -4.5721 32 1 4.4987 1.1315 -4.6593 33 1 3.3504 2.1941 -5.5081 34 1 4.2214 0.8691 -2.0345 35 1 1.5450 -1.9198 -2.2359 36 1 3.0866 -1.0299 -2.2363 37 1 4.5169 -2.9632 -0.1345 38 1 5.2593 -3.8854 -1.4637 39 1 5.1424 -2.1124 -1.5674 40 1 1.5096 -4.3583 -1.6950 41 1 3.0260 -5.2067 -1.3103 42 1 2.3478 -4.0300 -0.1595 43 1 4.9917 -5.6030 -5.2143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364775417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:21 Heat of formation + Delta-G solvation = 32.539101 kcal Electronic energy + Delta-G solvation = -26227.105317 eV Core-core repulsion = 22630.811685 eV Total energy + Delta-G solvation = -3596.293632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21490 -36.79325 -36.72982 -36.33224 -35.41210 -33.16984 -31.97900 -30.82021 -27.94638 -27.42601 -26.41057 -26.32531 -25.05266 -24.05266 -21.12205 -20.43712 -19.66388 -18.46770 -17.52213 -16.76109 -16.20605 -16.11135 -15.68525 -15.39935 -15.22656 -14.53653 -14.44706 -14.08490 -13.41042 -13.39290 -13.15447 -13.00397 -12.87986 -12.70370 -12.68442 -12.50653 -12.34608 -12.12743 -11.90459 -11.57160 -11.43445 -11.31104 -11.06353 -10.99756 -10.80985 -10.60345 -10.19126 -10.08863 -10.00866 -9.43541 -9.18898 -8.91433 -8.72586 -8.48776 -8.48125 -6.23112 -4.20180 0.71399 1.85475 2.51546 2.61483 3.17753 3.22954 3.32442 3.36380 4.22840 4.31174 4.48728 4.57382 4.78669 4.90704 5.06918 5.10847 5.13372 5.20633 5.34194 5.39102 5.43965 5.54048 5.57192 5.68616 5.78574 5.83081 5.90119 5.97706 6.14774 6.24396 6.30860 6.41147 6.45651 6.57164 6.63569 6.74753 6.84180 6.95931 7.10756 7.27811 7.59409 7.66076 8.35783 8.79499 9.41435 10.89407 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.005997 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.072414 B = 4667.714693 C = 6050.215823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.005 6.005 3 C 0.194 3.806 4 C -0.269 4.269 5 C 0.060 3.940 6 N -0.300 5.300 7 N -0.368 5.368 8 C 0.097 3.903 9 C 0.071 3.929 10 S 2.589 3.411 11 O -0.962 6.962 12 O -0.963 6.963 13 C -0.573 4.573 14 C 0.054 3.946 15 C -0.169 4.169 16 C -0.181 4.181 17 C -0.506 4.506 18 H 0.076 0.924 19 C 0.078 3.922 20 N -0.890 5.890 21 Si 0.873 3.127 22 H -0.281 1.281 23 H -0.301 1.301 24 H -0.246 1.246 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.181 0.819 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.177 0.823 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 14.139 6.520 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.841 5.841 3 C 0.067 3.933 4 C -0.282 4.282 5 C -0.127 4.127 6 N -0.122 5.122 7 N -0.149 5.149 8 C -0.044 4.044 9 C -0.078 4.078 10 S 2.687 3.313 11 O -0.953 6.953 12 O -0.953 6.953 13 C -0.706 4.706 14 C 0.051 3.949 15 C -0.226 4.226 16 C -0.238 4.238 17 C -0.545 4.545 18 H 0.094 0.906 19 C -0.126 4.126 20 N -0.526 5.526 21 Si 0.705 3.295 22 H -0.208 1.208 23 H -0.229 1.229 24 H -0.172 1.172 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.197 0.803 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.194 0.806 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.985 14.180 5.928 15.878 hybrid contribution 0.133 -1.122 0.333 1.178 sum -3.853 13.058 6.261 14.986 Atomic orbital electron populations 1.21375 0.78871 1.02810 1.01745 1.57677 1.14907 1.21353 1.90117 1.19514 0.97955 0.84806 0.90977 1.20542 0.98228 1.09526 0.99922 1.23704 0.99665 0.97947 0.91340 1.77330 0.96555 1.18493 1.19796 1.48494 1.17610 1.37453 1.11355 1.21969 0.93360 1.03929 0.85159 1.22581 1.00694 0.98131 0.86354 1.05757 0.73806 0.72582 0.79121 1.93527 1.43629 1.82985 1.75134 1.93539 1.64969 1.61692 1.75121 1.30444 1.09917 1.08543 1.21699 1.18237 0.90582 0.87292 0.98753 1.22663 0.99255 1.02737 0.97966 1.22813 1.01290 1.00261 0.99438 1.20630 1.38118 1.07405 0.88326 0.90586 1.24959 0.94109 0.98311 0.95173 1.69934 1.37474 1.27100 1.18095 0.87453 0.77103 0.82147 0.82833 1.20801 1.22912 1.17166 0.92651 0.91262 0.91325 0.89478 0.88251 0.80257 0.90735 0.88605 0.89196 0.80561 0.86002 0.86117 0.94366 0.91469 0.92563 0.91834 0.93043 0.93222 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.22 59.85 0.61 1.68 16 2 N -1.00 -13.37 3.10 -123.06 -0.38 -13.75 16 3 C 0.19 2.20 6.12 -5.20 -0.03 2.17 16 4 C -0.27 -3.23 5.68 -105.05 -0.60 -3.83 16 5 C 0.06 0.70 11.96 -17.36 -0.21 0.49 16 6 N -0.30 -4.13 12.58 30.62 0.39 -3.74 16 7 N -0.37 -4.74 4.01 -68.16 -0.27 -5.01 16 8 C 0.10 0.95 11.47 59.85 0.69 1.63 16 9 C 0.07 0.90 9.96 -17.22 -0.17 0.73 16 10 S 2.59 45.15 4.42 -107.50 -0.47 44.67 16 11 O -0.96 -18.14 14.38 -57.54 -0.83 -18.97 16 12 O -0.96 -18.95 14.71 -57.54 -0.85 -19.80 16 13 C -0.57 -10.64 5.10 37.16 0.19 -10.45 16 14 C 0.05 1.22 0.52 -155.65 -0.08 1.14 16 15 C -0.17 -3.69 6.95 37.16 0.26 -3.44 16 16 C -0.18 -4.07 7.22 37.16 0.27 -3.81 16 17 C -0.51 -13.38 8.62 -34.44 -0.30 -13.67 16 18 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16 20 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 21 Si 0.87 21.32 22.79 -169.99 -3.87 17.45 16 22 H -0.28 -6.81 7.10 56.52 0.40 -6.41 16 23 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 24 H -0.25 -5.62 4.67 56.52 0.26 -5.36 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.58 8.07 -51.93 -0.42 0.17 16 27 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 28 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.10 1.18 6.81 -51.93 -0.35 0.82 16 30 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.18 2.04 7.77 -52.48 -0.41 1.63 16 35 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16 36 H 0.12 2.07 6.29 -51.93 -0.33 1.75 16 37 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16 38 H 0.07 1.52 4.32 -51.93 -0.22 1.30 16 39 H 0.06 1.13 8.11 -51.93 -0.42 0.70 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.05 1.19 2.28 -51.93 -0.12 1.07 16 42 H 0.05 1.05 5.46 -51.93 -0.28 0.77 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -34.05 342.37 -6.18 -40.23 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.35 Total: 4.30 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 0.53 Total: -25.29 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.50 Total: -47.75 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.67 Total: -38.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -3.87 Total: 17.45 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.47 Total: 44.67 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.05 -6.18 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364775417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.771 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds