Wall clock time and date at job start Tue Mar 31 2020 11:48:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46497 * 120.00369 * 2 1
4 4 C 1.50700 * 109.47077 * 274.99842 * 3 2 1
5 5 C 1.39874 * 126.03743 * 90.02181 * 4 3 2
6 6 N 1.30833 * 108.20312 * 179.97438 * 5 4 3
7 7 N 1.40081 * 108.20662 * 0.02562 * 6 5 4
8 8 C 1.46499 * 126.04143 * 179.97438 * 7 6 5
9 9 C 1.34953 * 107.92300 * 359.75460 * 7 6 5
10 10 S 1.65604 * 119.99676 * 179.97438 * 2 1 3
11 11 O 1.42104 * 104.27530 * 206.07057 * 10 2 1
12 12 O 1.42101 * 104.27662 * 333.92588 * 10 2 1
13 13 C 1.81397 * 104.44849 * 90.00088 * 10 2 1
14 14 C 1.53006 * 109.47109 * 180.02562 * 13 10 2
15 15 C 1.53000 * 109.46930 * 300.00014 * 14 13 10
16 16 C 1.53001 * 109.46962 * 59.99791 * 14 13 10
17 17 C 1.50704 * 109.47062 * 179.97438 * 14 13 10
18 18 H 1.07994 * 119.99990 * 0.83950 * 17 14 13
19 19 C 1.37874 * 119.99658 * 180.83650 * 17 14 13
20 20 N 1.31521 * 119.99742 * 194.57976 * 19 17 14
21 21 Si 1.86803 * 120.00312 * 14.57915 * 19 17 14
22 22 H 1.48495 * 109.47074 * 84.45297 * 21 19 17
23 23 H 1.48499 * 109.47110 * 204.45483 * 21 19 17
24 24 H 1.48501 * 109.46939 * 324.45136 * 21 19 17
25 25 H 1.09002 * 109.46796 * 270.00071 * 1 2 3
26 26 H 1.09002 * 109.46814 * 29.99977 * 1 2 3
27 27 H 1.08993 * 109.47436 * 149.99920 * 1 2 3
28 28 H 1.09003 * 109.46882 * 34.99852 * 3 2 1
29 29 H 1.08996 * 109.47201 * 154.99989 * 3 2 1
30 30 H 1.07999 * 125.89855 * 0.02562 * 5 4 3
31 31 H 1.09000 * 109.47260 * 89.97149 * 8 7 6
32 32 H 1.09007 * 109.47212 * 209.97841 * 8 7 6
33 33 H 1.09006 * 109.47040 * 329.97033 * 8 7 6
34 34 H 1.08007 * 126.12614 * 180.23685 * 9 7 6
35 35 H 1.09004 * 109.47445 * 299.99713 * 13 10 2
36 36 H 1.08998 * 109.47737 * 60.00014 * 13 10 2
37 37 H 1.09002 * 109.47397 * 70.23166 * 15 14 13
38 38 H 1.09002 * 109.46855 * 190.23550 * 15 14 13
39 39 H 1.08999 * 109.47059 * 310.22875 * 15 14 13
40 40 H 1.08994 * 109.47128 * 60.00358 * 16 14 13
41 41 H 1.09001 * 109.47053 * 179.97438 * 16 14 13
42 42 H 1.09000 * 109.47414 * 300.00251 * 16 14 13
43 43 H 0.97000 * 119.99591 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.3415 1.7656 -1.4154
5 6 1.4446 2.6007 -2.0896
6 7 1.9095 2.8121 -3.2942
7 7 3.1184 2.1167 -3.4250
8 6 3.9689 2.0832 -4.6174
9 6 3.3638 1.4869 -2.2569
10 16 2.2929 -1.4342 0.0006
11 8 3.5395 -1.1190 0.6057
12 8 1.3969 -2.3559 0.6063
13 6 2.5192 -1.8270 -1.7558
14 6 3.2807 -3.1474 -1.8891
15 6 4.6481 -3.0178 -1.2152
16 6 2.4838 -4.2660 -1.2149
17 6 3.4682 -3.4740 -3.3484
18 1 3.0947 -2.7998 -4.1049
19 6 4.1165 -4.6334 -3.7175
20 7 4.5352 -4.7874 -4.9547
21 14 4.4004 -5.9857 -2.4603
22 1 3.1915 -6.8438 -2.3749
23 1 5.5643 -6.8098 -2.8741
24 1 4.6710 -5.3782 -1.1325
25 1 -0.3633 0.0000 1.0277
26 1 -0.3633 0.8900 -0.5138
27 1 -0.3634 -0.8899 -0.5138
28 1 1.6502 2.0042 0.5894
29 1 3.1858 1.1176 0.4343
30 1 0.5272 3.0024 -1.6854
31 1 4.6903 2.8991 -4.5721
32 1 4.4987 1.1315 -4.6593
33 1 3.3504 2.1941 -5.5081
34 1 4.2214 0.8691 -2.0345
35 1 1.5450 -1.9198 -2.2359
36 1 3.0866 -1.0299 -2.2363
37 1 4.5169 -2.9632 -0.1345
38 1 5.2593 -3.8854 -1.4637
39 1 5.1424 -2.1124 -1.5674
40 1 1.5096 -4.3583 -1.6950
41 1 3.0260 -5.2067 -1.3103
42 1 2.3478 -4.0300 -0.1595
43 1 4.9917 -5.6030 -5.2143
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001364775417.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:21
Heat of formation + Delta-G solvation = 32.539101 kcal
Electronic energy + Delta-G solvation = -26227.105317 eV
Core-core repulsion = 22630.811685 eV
Total energy + Delta-G solvation = -3596.293632 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.140 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.21490 -36.79325 -36.72982 -36.33224 -35.41210 -33.16984 -31.97900 -30.82021
-27.94638 -27.42601 -26.41057 -26.32531 -25.05266 -24.05266 -21.12205 -20.43712
-19.66388 -18.46770 -17.52213 -16.76109 -16.20605 -16.11135 -15.68525 -15.39935
-15.22656 -14.53653 -14.44706 -14.08490 -13.41042 -13.39290 -13.15447 -13.00397
-12.87986 -12.70370 -12.68442 -12.50653 -12.34608 -12.12743 -11.90459 -11.57160
-11.43445 -11.31104 -11.06353 -10.99756 -10.80985 -10.60345 -10.19126 -10.08863
-10.00866 -9.43541 -9.18898 -8.91433 -8.72586 -8.48776 -8.48125 -6.23112
-4.20180 0.71399 1.85475 2.51546 2.61483 3.17753 3.22954 3.32442
3.36380 4.22840 4.31174 4.48728 4.57382 4.78669 4.90704 5.06918
5.10847 5.13372 5.20633 5.34194 5.39102 5.43965 5.54048 5.57192
5.68616 5.78574 5.83081 5.90119 5.97706 6.14774 6.24396 6.30860
6.41147 6.45651 6.57164 6.63569 6.74753 6.84180 6.95931 7.10756
7.27811 7.59409 7.66076 8.35783 8.79499 9.41435 10.89407
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.013927 B = 0.005997 C = 0.004627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2010.072414 B = 4667.714693 C = 6050.215823
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -1.005 6.005
3 C 0.194 3.806
4 C -0.269 4.269
5 C 0.060 3.940
6 N -0.300 5.300
7 N -0.368 5.368
8 C 0.097 3.903
9 C 0.071 3.929
10 S 2.589 3.411
11 O -0.962 6.962
12 O -0.963 6.963
13 C -0.573 4.573
14 C 0.054 3.946
15 C -0.169 4.169
16 C -0.181 4.181
17 C -0.506 4.506
18 H 0.076 0.924
19 C 0.078 3.922
20 N -0.890 5.890
21 Si 0.873 3.127
22 H -0.281 1.281
23 H -0.301 1.301
24 H -0.246 1.246
25 H 0.055 0.945
26 H 0.069 0.931
27 H 0.068 0.932
28 H 0.087 0.913
29 H 0.099 0.901
30 H 0.181 0.819
31 H 0.074 0.926
32 H 0.095 0.905
33 H 0.089 0.911
34 H 0.177 0.823
35 H 0.122 0.878
36 H 0.121 0.879
37 H 0.037 0.963
38 H 0.067 0.933
39 H 0.055 0.945
40 H 0.063 0.937
41 H 0.051 0.949
42 H 0.049 0.951
43 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.213 14.139 6.520 16.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.048 4.048
2 N -0.841 5.841
3 C 0.067 3.933
4 C -0.282 4.282
5 C -0.127 4.127
6 N -0.122 5.122
7 N -0.149 5.149
8 C -0.044 4.044
9 C -0.078 4.078
10 S 2.687 3.313
11 O -0.953 6.953
12 O -0.953 6.953
13 C -0.706 4.706
14 C 0.051 3.949
15 C -0.226 4.226
16 C -0.238 4.238
17 C -0.545 4.545
18 H 0.094 0.906
19 C -0.126 4.126
20 N -0.526 5.526
21 Si 0.705 3.295
22 H -0.208 1.208
23 H -0.229 1.229
24 H -0.172 1.172
25 H 0.073 0.927
26 H 0.087 0.913
27 H 0.087 0.913
28 H 0.105 0.895
29 H 0.117 0.883
30 H 0.197 0.803
31 H 0.093 0.907
32 H 0.114 0.886
33 H 0.108 0.892
34 H 0.194 0.806
35 H 0.140 0.860
36 H 0.139 0.861
37 H 0.056 0.944
38 H 0.085 0.915
39 H 0.074 0.926
40 H 0.082 0.918
41 H 0.070 0.930
42 H 0.068 0.932
43 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -3.985 14.180 5.928 15.878
hybrid contribution 0.133 -1.122 0.333 1.178
sum -3.853 13.058 6.261 14.986
Atomic orbital electron populations
1.21375 0.78871 1.02810 1.01745 1.57677 1.14907 1.21353 1.90117
1.19514 0.97955 0.84806 0.90977 1.20542 0.98228 1.09526 0.99922
1.23704 0.99665 0.97947 0.91340 1.77330 0.96555 1.18493 1.19796
1.48494 1.17610 1.37453 1.11355 1.21969 0.93360 1.03929 0.85159
1.22581 1.00694 0.98131 0.86354 1.05757 0.73806 0.72582 0.79121
1.93527 1.43629 1.82985 1.75134 1.93539 1.64969 1.61692 1.75121
1.30444 1.09917 1.08543 1.21699 1.18237 0.90582 0.87292 0.98753
1.22663 0.99255 1.02737 0.97966 1.22813 1.01290 1.00261 0.99438
1.20630 1.38118 1.07405 0.88326 0.90586 1.24959 0.94109 0.98311
0.95173 1.69934 1.37474 1.27100 1.18095 0.87453 0.77103 0.82147
0.82833 1.20801 1.22912 1.17166 0.92651 0.91262 0.91325 0.89478
0.88251 0.80257 0.90735 0.88605 0.89196 0.80561 0.86002 0.86117
0.94366 0.91469 0.92563 0.91834 0.93043 0.93222 0.92432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.07 10.22 59.85 0.61 1.68 16
2 N -1.00 -13.37 3.10 -123.06 -0.38 -13.75 16
3 C 0.19 2.20 6.12 -5.20 -0.03 2.17 16
4 C -0.27 -3.23 5.68 -105.05 -0.60 -3.83 16
5 C 0.06 0.70 11.96 -17.36 -0.21 0.49 16
6 N -0.30 -4.13 12.58 30.62 0.39 -3.74 16
7 N -0.37 -4.74 4.01 -68.16 -0.27 -5.01 16
8 C 0.10 0.95 11.47 59.85 0.69 1.63 16
9 C 0.07 0.90 9.96 -17.22 -0.17 0.73 16
10 S 2.59 45.15 4.42 -107.50 -0.47 44.67 16
11 O -0.96 -18.14 14.38 -57.54 -0.83 -18.97 16
12 O -0.96 -18.95 14.71 -57.54 -0.85 -19.80 16
13 C -0.57 -10.64 5.10 37.16 0.19 -10.45 16
14 C 0.05 1.22 0.52 -155.65 -0.08 1.14 16
15 C -0.17 -3.69 6.95 37.16 0.26 -3.44 16
16 C -0.18 -4.07 7.22 37.16 0.27 -3.81 16
17 C -0.51 -13.38 8.62 -34.44 -0.30 -13.67 16
18 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16
19 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16
20 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16
21 Si 0.87 21.32 22.79 -169.99 -3.87 17.45 16
22 H -0.28 -6.81 7.10 56.52 0.40 -6.41 16
23 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16
24 H -0.25 -5.62 4.67 56.52 0.26 -5.36 16
25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
26 H 0.07 0.58 8.07 -51.93 -0.42 0.17 16
27 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16
28 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16
29 H 0.10 1.18 6.81 -51.93 -0.35 0.82 16
30 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16
31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.18 2.04 7.77 -52.48 -0.41 1.63 16
35 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16
36 H 0.12 2.07 6.29 -51.93 -0.33 1.75 16
37 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16
38 H 0.07 1.52 4.32 -51.93 -0.22 1.30 16
39 H 0.06 1.13 8.11 -51.93 -0.42 0.70 16
40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16
41 H 0.05 1.19 2.28 -51.93 -0.12 1.07 16
42 H 0.05 1.05 5.46 -51.93 -0.28 0.77 16
43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
LS Contribution 342.37 15.07 5.16 5.16
Total: -1.00 -34.05 342.37 -6.18 -40.23
By element:
Atomic # 1 Polarization: 10.65 SS G_CDS: -6.35 Total: 4.30 kcal
Atomic # 6 Polarization: -25.83 SS G_CDS: 0.53 Total: -25.29 kcal
Atomic # 7 Polarization: -48.25 SS G_CDS: 0.50 Total: -47.75 kcal
Atomic # 8 Polarization: -37.09 SS G_CDS: -1.67 Total: -38.77 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -3.87 Total: 17.45 kcal
Atomic # 16 Polarization: 45.15 SS G_CDS: -0.47 Total: 44.67 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -34.05 -6.18 -40.23 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364775417.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.771 kcal
(2) G-P(sol) polarization free energy of solvation -34.053 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.719 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.539 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds