Wall clock time and date at job start Tue Mar 31 2020 11:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00369 * 2 1 4 4 C 1.50700 * 109.47077 * 274.99842 * 3 2 1 5 5 C 1.39874 * 126.03743 * 90.02181 * 4 3 2 6 6 N 1.30833 * 108.20312 * 179.97438 * 5 4 3 7 7 N 1.40081 * 108.20662 * 0.02562 * 6 5 4 8 8 C 1.46499 * 126.04143 * 179.97438 * 7 6 5 9 9 C 1.34953 * 107.92300 * 359.75460 * 7 6 5 10 10 S 1.65604 * 119.99676 * 179.97438 * 2 1 3 11 11 O 1.42104 * 104.27530 * 206.07057 * 10 2 1 12 12 O 1.42101 * 104.27662 * 333.92588 * 10 2 1 13 13 C 1.81397 * 104.44849 * 90.00088 * 10 2 1 14 14 C 1.53006 * 109.47109 * 180.02562 * 13 10 2 15 15 C 1.53000 * 109.46930 * 300.00014 * 14 13 10 16 16 C 1.53001 * 109.46962 * 59.99791 * 14 13 10 17 17 C 1.50704 * 109.47062 * 179.97438 * 14 13 10 18 18 H 1.07994 * 119.99990 * 0.83950 * 17 14 13 19 19 C 1.37874 * 119.99658 * 180.83650 * 17 14 13 20 20 N 1.31521 * 119.99742 * 194.57976 * 19 17 14 21 21 Si 1.86803 * 120.00312 * 14.57915 * 19 17 14 22 22 H 1.48495 * 109.47074 * 84.45297 * 21 19 17 23 23 H 1.48499 * 109.47110 * 204.45483 * 21 19 17 24 24 H 1.48501 * 109.46939 * 324.45136 * 21 19 17 25 25 H 1.09002 * 109.46796 * 270.00071 * 1 2 3 26 26 H 1.09002 * 109.46814 * 29.99977 * 1 2 3 27 27 H 1.08993 * 109.47436 * 149.99920 * 1 2 3 28 28 H 1.09003 * 109.46882 * 34.99852 * 3 2 1 29 29 H 1.08996 * 109.47201 * 154.99989 * 3 2 1 30 30 H 1.07999 * 125.89855 * 0.02562 * 5 4 3 31 31 H 1.09000 * 109.47260 * 89.97149 * 8 7 6 32 32 H 1.09007 * 109.47212 * 209.97841 * 8 7 6 33 33 H 1.09006 * 109.47040 * 329.97033 * 8 7 6 34 34 H 1.08007 * 126.12614 * 180.23685 * 9 7 6 35 35 H 1.09004 * 109.47445 * 299.99713 * 13 10 2 36 36 H 1.08998 * 109.47737 * 60.00014 * 13 10 2 37 37 H 1.09002 * 109.47397 * 70.23166 * 15 14 13 38 38 H 1.09002 * 109.46855 * 190.23550 * 15 14 13 39 39 H 1.08999 * 109.47059 * 310.22875 * 15 14 13 40 40 H 1.08994 * 109.47128 * 60.00358 * 16 14 13 41 41 H 1.09001 * 109.47053 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.47414 * 300.00251 * 16 14 13 43 43 H 0.97000 * 119.99591 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 6 1.4446 2.6007 -2.0896 6 7 1.9095 2.8121 -3.2942 7 7 3.1184 2.1167 -3.4250 8 6 3.9689 2.0832 -4.6174 9 6 3.3638 1.4869 -2.2569 10 16 2.2929 -1.4342 0.0006 11 8 3.5395 -1.1190 0.6057 12 8 1.3969 -2.3559 0.6063 13 6 2.5192 -1.8270 -1.7558 14 6 3.2807 -3.1474 -1.8891 15 6 4.6481 -3.0178 -1.2152 16 6 2.4838 -4.2660 -1.2149 17 6 3.4682 -3.4740 -3.3484 18 1 3.0947 -2.7998 -4.1049 19 6 4.1165 -4.6334 -3.7175 20 7 4.5352 -4.7874 -4.9547 21 14 4.4004 -5.9857 -2.4603 22 1 3.1915 -6.8438 -2.3749 23 1 5.5643 -6.8098 -2.8741 24 1 4.6710 -5.3782 -1.1325 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6502 2.0042 0.5894 29 1 3.1858 1.1176 0.4343 30 1 0.5272 3.0024 -1.6854 31 1 4.6903 2.8991 -4.5721 32 1 4.4987 1.1315 -4.6593 33 1 3.3504 2.1941 -5.5081 34 1 4.2214 0.8691 -2.0345 35 1 1.5450 -1.9198 -2.2359 36 1 3.0866 -1.0299 -2.2363 37 1 4.5169 -2.9632 -0.1345 38 1 5.2593 -3.8854 -1.4637 39 1 5.1424 -2.1124 -1.5674 40 1 1.5096 -4.3583 -1.6950 41 1 3.0260 -5.2067 -1.3103 42 1 2.3478 -4.0300 -0.1595 43 1 4.9917 -5.6030 -5.2143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364775417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:20 Heat of formation + Delta-G solvation = 7.639030 kcal Electronic energy + Delta-G solvation = -26228.185065 eV Core-core repulsion = 22630.811685 eV Total energy + Delta-G solvation = -3597.373380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12394 -38.52186 -38.18065 -37.36971 -36.84085 -34.07108 -34.02923 -31.75448 -29.10280 -28.69677 -28.16190 -27.25201 -27.06636 -25.02299 -22.03502 -21.59875 -21.22921 -19.74898 -18.83070 -18.14752 -17.72326 -17.33376 -17.23046 -16.90193 -16.31214 -15.63312 -15.42216 -15.12077 -15.05819 -14.98966 -14.77707 -14.35966 -14.16945 -14.06351 -13.76047 -13.57769 -13.49794 -13.31427 -13.19511 -13.06910 -12.77430 -12.74151 -12.60102 -12.43308 -12.38469 -12.01720 -11.86698 -11.81198 -11.52645 -10.97136 -10.70049 -10.51875 -10.36971 -9.92060 -9.40965 -8.36460 -6.35494 -0.64802 0.91649 1.28814 1.34204 1.41746 1.59859 1.68463 2.08190 2.28042 2.84126 2.98378 3.22098 3.65130 3.71750 3.92449 3.99265 4.05967 4.23603 4.32155 4.34496 4.41782 4.48991 4.53761 4.58375 4.68324 4.68630 4.73094 4.79122 4.82810 4.92659 4.93468 5.02067 5.07947 5.13005 5.29097 5.36481 5.52068 5.61551 5.69610 5.77459 6.06870 6.25179 6.66468 6.75648 7.28797 8.79331 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.005997 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.072414 B = 4667.714693 C = 6050.215823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.995 5.995 3 C 0.191 3.809 4 C -0.270 4.270 5 C 0.064 3.936 6 N -0.332 5.332 7 N -0.378 5.378 8 C 0.091 3.909 9 C 0.053 3.947 10 S 2.609 3.391 11 O -0.976 6.976 12 O -0.984 6.984 13 C -0.582 4.582 14 C 0.046 3.954 15 C -0.173 4.173 16 C -0.187 4.187 17 C -0.500 4.500 18 H 0.045 0.955 19 C 0.029 3.971 20 N -0.935 5.935 21 Si 0.914 3.086 22 H -0.278 1.278 23 H -0.304 1.304 24 H -0.220 1.220 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.213 0.787 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.181 0.819 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 15.494 8.641 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.834 5.834 3 C 0.065 3.935 4 C -0.283 4.283 5 C -0.122 4.122 6 N -0.154 5.154 7 N -0.159 5.159 8 C -0.050 4.050 9 C -0.096 4.096 10 S 2.705 3.295 11 O -0.967 6.967 12 O -0.974 6.974 13 C -0.713 4.713 14 C 0.044 3.956 15 C -0.230 4.230 16 C -0.243 4.243 17 C -0.539 4.539 18 H 0.063 0.937 19 C -0.170 4.170 20 N -0.574 5.574 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.233 1.233 24 H -0.144 1.144 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.113 0.887 30 H 0.229 0.771 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.198 0.802 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.937 15.534 8.044 18.177 hybrid contribution 0.366 -1.398 -0.363 1.490 sum -4.571 14.136 7.682 16.725 Atomic orbital electron populations 1.21691 0.77099 1.04055 1.03127 1.57416 1.15945 1.20453 1.89541 1.19769 0.98252 0.84426 0.91026 1.20662 0.98036 1.09502 1.00120 1.24247 1.00341 0.97063 0.90517 1.77294 0.97279 1.19655 1.21160 1.48735 1.17772 1.37481 1.11959 1.22139 0.93557 1.04723 0.84558 1.22867 1.01394 0.98494 0.86816 1.04955 0.73484 0.73234 0.77827 1.93505 1.44810 1.83429 1.74914 1.93506 1.65430 1.63428 1.75076 1.30474 1.09707 1.06751 1.24319 1.18207 0.91784 0.89516 0.96107 1.22663 0.98657 1.02907 0.98774 1.22847 1.01364 0.99750 1.00388 1.20864 1.36552 1.06322 0.90146 0.93667 1.25634 0.94370 1.00437 0.96578 1.70049 1.39383 1.27840 1.20081 0.86757 0.76907 0.79780 0.82207 1.20500 1.23289 1.14435 0.91248 0.88220 0.92010 0.85803 0.88730 0.77062 0.88709 0.88728 0.89084 0.80218 0.85594 0.85310 0.93043 0.92508 0.91415 0.91481 0.93736 0.91816 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 10.22 127.77 1.31 2.86 16 2 N -1.00 -23.35 3.10 -543.24 -1.68 -25.04 16 3 C 0.19 3.68 6.12 85.63 0.52 4.20 16 4 C -0.27 -5.80 5.68 -20.14 -0.11 -5.91 16 5 C 0.06 1.32 11.96 85.24 1.02 2.34 16 6 N -0.33 -8.62 12.58 -57.02 -0.72 -9.34 16 7 N -0.38 -9.41 4.01 -369.55 -1.48 -10.89 16 8 C 0.09 1.74 11.47 127.77 1.47 3.21 16 9 C 0.05 1.28 9.96 83.54 0.83 2.11 16 10 S 2.61 85.16 4.42 -56.49 -0.25 84.91 16 11 O -0.98 -34.58 14.38 -127.65 -1.84 -36.42 16 12 O -0.98 -36.51 14.71 -127.65 -1.88 -38.38 16 13 C -0.58 -20.96 5.10 71.98 0.37 -20.59 16 14 C 0.05 2.05 0.52 -52.92 -0.03 2.02 16 15 C -0.17 -7.31 6.95 71.98 0.50 -6.81 16 16 C -0.19 -8.12 7.22 71.98 0.52 -7.60 16 17 C -0.50 -26.75 8.62 25.60 0.22 -26.53 16 18 H 0.05 2.63 7.99 -2.91 -0.02 2.61 16 19 C 0.03 1.60 5.31 84.65 0.45 2.05 16 20 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 21 Si 0.91 43.57 22.79 68.60 1.56 45.14 16 22 H -0.28 -13.02 7.10 99.48 0.71 -12.32 16 23 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 24 H -0.22 -9.53 4.67 99.48 0.46 -9.07 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.23 8.07 -2.39 -0.02 1.21 16 27 H 0.06 1.24 7.79 -2.39 -0.02 1.22 16 28 H 0.12 1.55 8.11 -2.39 -0.02 1.53 16 29 H 0.09 1.97 6.81 -2.39 -0.02 1.95 16 30 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.18 4.04 7.77 -2.91 -0.02 4.02 16 35 H 0.13 4.34 8.14 -2.39 -0.02 4.33 16 36 H 0.13 4.34 6.29 -2.39 -0.02 4.33 16 37 H 0.05 2.02 6.21 -2.39 -0.01 2.01 16 38 H 0.06 2.49 4.32 -2.39 -0.01 2.48 16 39 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 40 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.04 1.98 2.28 -2.39 -0.01 1.97 16 42 H 0.06 2.58 5.46 -2.39 -0.01 2.56 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.04 342.37 1.85 -71.19 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.77 Total: 23.29 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 7.06 Total: -48.65 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -3.58 Total: -101.07 kcal Atomic # 8 Polarization: -71.09 SS G_CDS: -3.71 Total: -74.80 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.56 Total: 45.14 kcal Atomic # 16 Polarization: 85.16 SS G_CDS: -0.25 Total: 84.91 kcal Total: -73.04 1.85 -71.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364775417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.828 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds