Wall clock time and date at job start Tue Mar 31 2020 11:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 120.00116 * 2 1 4 4 C 1.50699 * 109.46710 * 85.00109 * 3 2 1 5 5 C 1.39869 * 125.89740 * 95.02430 * 4 3 2 6 6 C 1.35319 * 107.92200 * 179.97438 * 5 4 3 7 7 N 1.34947 * 107.74175 * 359.97438 * 6 5 4 8 8 C 1.46501 * 126.03435 * 180.02562 * 7 6 5 9 9 N 1.30832 * 125.89840 * 274.96923 * 4 3 2 10 10 S 1.65607 * 119.99976 * 180.02562 * 2 1 3 11 11 O 1.42102 * 104.27264 * 26.07065 * 10 2 1 12 12 O 1.42095 * 104.27549 * 153.92659 * 10 2 1 13 13 C 1.81395 * 104.44805 * 269.99891 * 10 2 1 14 14 C 1.53001 * 109.47097 * 179.97438 * 13 10 2 15 15 C 1.52994 * 109.47274 * 300.00118 * 14 13 10 16 16 C 1.53003 * 109.46883 * 60.00108 * 14 13 10 17 17 C 1.50702 * 109.47200 * 180.02562 * 14 13 10 18 18 H 1.07998 * 119.99760 * 357.69323 * 17 14 13 19 19 C 1.37878 * 120.00090 * 177.69584 * 17 14 13 20 20 N 1.31510 * 119.99905 * 6.58110 * 19 17 14 21 21 Si 1.86793 * 120.00032 * 186.57943 * 19 17 14 22 22 H 1.48506 * 109.47104 * 84.99576 * 21 19 17 23 23 H 1.48506 * 109.47279 * 204.99422 * 21 19 17 24 24 H 1.48500 * 109.47497 * 324.99439 * 21 19 17 25 25 H 1.09002 * 109.47269 * 89.99910 * 1 2 3 26 26 H 1.09003 * 109.46829 * 209.99967 * 1 2 3 27 27 H 1.08999 * 109.46849 * 329.99813 * 1 2 3 28 28 H 1.09001 * 109.47156 * 325.00000 * 3 2 1 29 29 H 1.08998 * 109.46916 * 204.99980 * 3 2 1 30 30 H 1.08004 * 126.04377 * 359.97208 * 5 4 3 31 31 H 1.07995 * 126.12719 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47206 * 270.01984 * 8 7 6 33 33 H 1.08999 * 109.47432 * 30.02146 * 8 7 6 34 34 H 1.09005 * 109.47225 * 150.02244 * 8 7 6 35 35 H 1.08997 * 109.47372 * 299.99792 * 13 10 2 36 36 H 1.09003 * 109.47257 * 59.99884 * 13 10 2 37 37 H 1.09008 * 109.47237 * 66.66441 * 15 14 13 38 38 H 1.08996 * 109.47311 * 186.66927 * 15 14 13 39 39 H 1.09006 * 109.47084 * 306.67341 * 15 14 13 40 40 H 1.08997 * 109.47252 * 60.00263 * 16 14 13 41 41 H 1.09003 * 109.46712 * 179.97438 * 16 14 13 42 42 H 1.09005 * 109.47126 * 299.99891 * 16 14 13 43 43 H 0.96998 * 120.00460 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 3.4428 1.5533 2.2511 6 6 3.1889 2.1561 3.4358 7 7 1.9703 2.7299 3.3524 8 6 1.3012 3.4896 4.4113 9 7 1.4582 2.4708 2.0744 10 16 2.2930 -1.4342 -0.0006 11 8 1.3969 -2.3558 -0.6063 12 8 3.5394 -1.1189 -0.6058 13 6 2.5194 -1.8269 1.7558 14 6 3.2809 -3.1472 1.8891 15 6 2.4841 -4.2659 1.2150 16 6 4.6483 -3.0176 1.2152 17 6 3.4683 -3.4738 3.3483 18 1 3.1159 -2.7883 4.1047 19 6 4.0899 -4.6479 3.7177 20 7 4.6338 -5.4200 2.8026 21 14 4.1595 -5.1415 5.5179 22 1 2.9094 -5.8545 5.8843 23 1 5.3234 -6.0365 5.7411 24 1 4.3010 -3.9262 6.3594 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6502 2.0043 -0.5894 29 1 3.1858 1.1177 -0.4343 30 1 4.3378 1.0052 1.9961 31 1 3.8444 2.1752 4.2938 32 1 0.7042 2.8127 5.0225 33 1 2.0489 3.9788 5.0355 34 1 0.6525 4.2427 3.9638 35 1 3.0867 -1.0298 2.2362 36 1 1.5451 -1.9197 2.2358 37 1 2.4494 -4.0901 0.1397 38 1 2.9654 -5.2239 1.4112 39 1 1.4696 -4.2805 1.6136 40 1 5.2160 -2.2206 1.6955 41 1 5.1910 -3.9581 1.3106 42 1 4.5123 -2.7815 0.1597 43 1 5.0714 -6.2458 3.0624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364976450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:13 Heat of formation + Delta-G solvation = -7.683588 kcal Electronic energy + Delta-G solvation = -25992.928297 eV Core-core repulsion = 22394.890478 eV Total energy + Delta-G solvation = -3598.037819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08903 -38.17914 -38.13368 -37.50159 -36.83778 -34.07583 -33.61725 -31.07145 -29.77574 -28.37643 -27.68372 -27.25236 -27.01022 -25.29495 -22.04945 -21.38679 -20.89121 -19.71981 -18.74485 -17.89267 -17.86498 -17.34918 -16.99131 -16.65475 -16.32265 -15.62033 -15.49151 -15.13776 -14.76256 -14.56046 -14.52635 -14.41358 -13.99620 -13.84051 -13.55580 -13.43884 -13.20819 -13.13646 -13.10542 -12.88763 -12.79845 -12.67075 -12.48842 -12.45107 -12.19375 -12.12674 -11.94474 -11.60490 -11.55983 -11.37366 -10.69689 -10.38619 -10.25643 -10.07015 -9.48959 -8.02267 -6.19961 -0.64113 0.90750 1.43717 1.45533 1.53361 1.54847 1.69092 2.05378 2.44619 2.87673 3.18766 3.23982 3.55902 3.74825 3.93036 4.09781 4.14795 4.20875 4.35613 4.47043 4.57406 4.60088 4.71755 4.72514 4.75490 4.85605 4.86326 4.90658 4.93878 4.98341 5.00793 5.08904 5.16993 5.39251 5.48258 5.56051 5.65015 5.66982 5.97965 6.12967 6.16522 6.36346 6.73210 6.83415 7.47403 8.97588 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.005632 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.425344 B = 4969.984762 C = 6454.998883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.996 5.996 3 C 0.192 3.808 4 C 0.039 3.961 5 C -0.294 4.294 6 C 0.063 3.937 7 N -0.378 5.378 8 C 0.093 3.907 9 N -0.304 5.304 10 S 2.609 3.391 11 O -0.987 6.987 12 O -0.979 6.979 13 C -0.581 4.581 14 C 0.072 3.928 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.514 4.514 18 H 0.058 0.942 19 C 0.020 3.980 20 N -0.906 5.906 21 Si 0.951 3.049 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.267 1.267 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.207 0.793 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 18.273 2.011 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.834 5.834 3 C 0.065 3.935 4 C -0.128 4.128 5 C -0.324 4.324 6 C -0.083 4.083 7 N -0.160 5.160 8 C -0.047 4.047 9 N -0.129 5.129 10 S 2.706 3.294 11 O -0.977 6.977 12 O -0.969 6.969 13 C -0.713 4.713 14 C 0.070 3.930 15 C -0.215 4.215 16 C -0.215 4.215 17 C -0.553 4.553 18 H 0.077 0.923 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.777 3.223 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.192 1.192 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.224 0.776 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.079 18.321 1.266 19.681 hybrid contribution 0.881 -0.902 1.684 2.104 sum -6.198 17.418 2.950 18.722 Atomic orbital electron populations 1.21647 0.77157 1.03660 1.03169 1.57399 1.15953 1.20269 1.89730 1.19831 0.99283 0.85012 0.89406 1.22883 0.93174 0.98532 0.98228 1.21759 1.02851 1.12354 0.95440 1.23036 0.88712 0.96097 1.00458 1.48907 1.13934 1.41973 1.11229 1.22204 0.99520 0.95928 0.87027 1.77148 1.22504 1.21370 0.91852 1.05026 0.73143 0.72688 0.78521 1.93502 1.65548 1.63059 1.75589 1.93480 1.44629 1.83291 1.75546 1.30496 1.09730 1.08443 1.22654 1.17907 0.90987 0.87189 0.96903 1.22146 0.99053 1.03485 0.96768 1.22208 0.99740 1.02762 0.96793 1.21207 1.38166 1.04972 0.90987 0.92330 1.25637 0.94684 0.96580 1.01032 1.69942 1.36744 1.13611 1.34133 0.85675 0.77401 0.78260 0.80916 1.20445 1.21132 1.19185 0.91005 0.91593 0.89280 0.86343 0.86953 0.83516 0.77595 0.90120 0.86562 0.88778 0.85018 0.86025 0.95372 0.90936 0.94261 0.93975 0.90767 0.95083 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.18 10.22 127.77 1.31 3.49 16 2 N -1.00 -29.45 3.10 -543.21 -1.68 -31.14 16 3 C 0.19 4.96 6.20 85.63 0.53 5.49 16 4 C 0.04 1.06 6.80 43.10 0.29 1.35 16 5 C -0.29 -7.84 9.47 21.99 0.21 -7.63 16 6 C 0.06 1.36 11.49 83.54 0.96 2.32 16 7 N -0.38 -8.02 4.01 -369.56 -1.48 -9.50 16 8 C 0.09 1.05 11.47 127.77 1.47 2.51 16 9 N -0.30 -8.00 12.58 -47.39 -0.60 -8.59 16 10 S 2.61 100.60 4.41 -56.49 -0.25 100.35 16 11 O -0.99 -42.72 14.85 -127.65 -1.90 -44.62 16 12 O -0.98 -41.04 14.15 -127.65 -1.81 -42.84 16 13 C -0.58 -23.55 5.11 71.98 0.37 -23.18 16 14 C 0.07 3.55 0.52 -52.93 -0.03 3.53 16 15 C -0.16 -7.95 7.58 71.98 0.55 -7.40 16 16 C -0.16 -7.88 7.80 71.98 0.56 -7.31 16 17 C -0.51 -27.02 8.01 25.60 0.20 -26.82 16 18 H 0.06 2.99 7.75 -2.91 -0.02 2.97 16 19 C 0.02 1.07 5.09 84.66 0.43 1.50 16 20 N -0.91 -50.14 9.39 21.45 0.20 -49.94 16 21 Si 0.95 42.00 29.54 68.60 2.03 44.02 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.67 7.79 -2.39 -0.02 1.65 16 27 H 0.09 1.89 8.07 -2.39 -0.02 1.87 16 28 H 0.12 2.42 8.11 -2.39 -0.02 2.40 16 29 H 0.11 2.96 6.81 -2.39 -0.02 2.94 16 30 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 31 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.13 5.00 6.83 -2.39 -0.02 4.98 16 36 H 0.12 4.63 8.14 -2.39 -0.02 4.61 16 37 H 0.03 1.37 5.96 -2.38 -0.01 1.35 16 38 H 0.07 3.97 5.99 -2.39 -0.01 3.96 16 39 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 4.05 6.01 -2.39 -0.01 4.03 16 42 H 0.03 1.48 5.47 -2.38 -0.01 1.47 16 43 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -70.84 353.31 2.36 -68.48 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 1.00 Total: 25.93 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 6.85 Total: -52.15 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.56 Total: -99.17 kcal Atomic # 8 Polarization: -83.76 SS G_CDS: -3.70 Total: -87.46 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 100.60 SS G_CDS: -0.25 Total: 100.35 kcal Total: -70.84 2.36 -68.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364976450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.794 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds