Wall clock time and date at job start Tue Mar 31 2020 11:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47050 * 2 1 4 4 H 1.08995 * 109.47638 * 54.99609 * 3 2 1 5 5 N 1.46505 * 109.46957 * 294.99800 * 3 2 1 6 6 C 1.34778 * 119.99915 * 85.00347 * 5 3 2 7 7 O 1.21556 * 119.99781 * 359.97438 * 6 5 3 8 8 C 1.47876 * 120.00384 * 180.02562 * 6 5 3 9 9 C 1.39929 * 120.02340 * 359.72292 * 8 6 5 10 10 C 1.38323 * 120.35934 * 179.72033 * 9 8 6 11 11 C 1.37760 * 120.41127 * 0.55353 * 10 9 8 12 12 C 1.40747 * 120.03786 * 359.72830 * 11 10 9 13 13 C 1.41435 * 120.17846 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00286 * 24.42350 * 13 12 11 15 15 C 1.39944 * 120.00171 * 204.43020 * 13 12 11 16 16 N 1.30821 * 119.99644 * 17.89084 * 15 13 12 17 17 Si 1.86795 * 119.99897 * 197.88790 * 15 13 12 18 18 H 1.48502 * 109.47361 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47093 * 120.00170 * 17 15 13 20 20 H 1.48498 * 109.47183 * 240.00031 * 17 15 13 21 21 C 1.38994 * 120.03030 * 180.02562 * 8 6 5 22 22 C 1.50698 * 109.47248 * 175.00142 * 3 2 1 23 23 N 1.29946 * 126.28778 * 74.97602 * 22 3 2 24 24 O 1.21303 * 110.24956 * 180.02562 * 23 22 3 25 25 C 1.33641 * 109.81285 * 359.97438 * 24 23 22 26 26 C 1.50701 * 126.54929 * 180.02562 * 25 24 23 27 27 N 1.31127 * 106.89631 * 0.02562 * 25 24 23 28 28 H 1.09000 * 109.47142 * 299.99675 * 1 2 3 29 29 H 1.08999 * 109.47563 * 60.00471 * 1 2 3 30 30 H 1.09010 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47203 * 239.99779 * 2 1 3 32 32 H 1.09001 * 109.47321 * 120.00265 * 2 1 3 33 33 H 0.96992 * 120.00198 * 264.99552 * 5 3 2 34 34 H 1.07997 * 119.81701 * 359.97438 * 9 8 6 35 35 H 1.07995 * 119.80176 * 180.25784 * 10 9 8 36 36 H 1.07995 * 119.98024 * 179.74185 * 11 10 9 37 37 H 0.97006 * 119.99556 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.20295 * 359.96961 * 21 8 6 39 39 H 1.09000 * 109.47293 * 269.96343 * 26 25 24 40 40 H 1.09000 * 109.47559 * 29.96506 * 26 25 24 41 41 H 1.09008 * 109.46825 * 149.96332 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4350 2.6643 -1.3670 7 8 -0.3414 2.6318 -0.4323 8 6 0.0435 3.3250 -2.6308 9 6 0.9387 3.3668 -3.7055 10 6 0.5776 3.9779 -4.8927 11 6 -0.6627 4.5621 -5.0272 12 6 -1.5743 4.5351 -3.9552 13 6 -2.8487 5.1335 -4.0902 14 1 -3.2868 5.2557 -5.0698 15 6 -3.5419 5.5673 -2.9546 16 7 -2.9026 5.7492 -1.8278 17 14 -5.3800 5.8868 -3.0478 18 1 -5.8615 5.6091 -4.4248 19 1 -6.0857 5.0003 -2.0878 20 1 -5.6539 7.3054 -2.7049 21 6 -1.2115 3.9103 -2.7500 22 6 3.5418 1.4443 0.1238 23 7 4.3911 1.1445 -0.8129 24 8 5.5264 1.2417 -0.3971 25 6 5.5087 1.6249 0.8831 26 6 6.7071 1.8608 1.7659 27 7 4.2494 1.7564 1.2241 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2718 2.1231 -1.9978 34 1 1.9153 2.9160 -3.6088 35 1 1.2740 4.0014 -5.7178 36 1 -0.9359 5.0410 -5.9559 37 1 -3.3830 6.0503 -1.0408 38 1 -1.9041 3.8842 -1.9216 39 1 6.9725 0.9335 2.2736 40 1 7.5470 2.1948 1.1569 41 1 6.4684 2.6247 2.5059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457449057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:37 Heat of formation + Delta-G solvation = 23.718922 kcal Electronic energy + Delta-G solvation = -25601.515465 eV Core-core repulsion = 21869.395410 eV Total energy + Delta-G solvation = -3732.120055 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.76719 -41.27224 -39.09803 -37.77399 -36.34309 -35.65108 -34.21656 -33.66821 -31.80272 -31.29531 -29.78739 -28.66483 -27.18362 -24.89106 -24.47602 -23.49957 -22.86383 -21.72630 -21.28809 -19.70427 -19.29198 -18.64467 -17.95231 -17.47702 -16.94419 -16.61298 -16.45794 -15.79194 -15.54079 -15.46430 -15.02052 -14.64455 -14.42788 -14.30875 -14.17825 -14.13137 -13.90228 -13.48633 -13.10481 -13.02476 -12.95751 -12.80997 -12.67220 -12.53565 -12.46636 -12.21977 -12.20558 -12.00207 -11.87928 -11.53879 -11.09789 -11.04797 -10.80065 -10.31090 -9.53178 -9.42787 -8.68812 -6.40084 0.06822 0.32377 0.97092 0.97773 1.36285 1.45278 1.52594 1.85189 1.93897 2.03253 2.18322 2.45320 2.75305 2.98838 3.65060 3.66210 3.76993 3.94430 4.00733 4.27429 4.35606 4.41604 4.48122 4.53275 4.59914 4.67184 4.71076 4.85902 4.86373 4.93488 5.00355 5.06024 5.13990 5.14152 5.24031 5.30406 5.34982 5.48597 5.81318 5.88489 6.02028 6.23974 6.38158 6.58911 6.85572 6.91086 7.04965 7.18032 8.28123 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.003140 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.466343 B = 8915.577699 C = 9438.238228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.240 3.760 4 H 0.097 0.903 5 N -0.713 5.713 6 C 0.570 3.430 7 O -0.563 6.563 8 C -0.138 4.138 9 C -0.204 4.204 10 C -0.094 4.094 11 C -0.217 4.217 12 C 0.068 3.932 13 C -0.494 4.494 14 H 0.085 0.915 15 C 0.030 3.970 16 N -0.822 5.822 17 Si 0.983 3.017 18 H -0.251 1.251 19 H -0.270 1.270 20 H -0.264 1.264 21 C -0.125 4.125 22 C 0.156 3.844 23 N -0.387 5.387 24 O 0.085 5.915 25 C 0.193 3.807 26 C -0.061 4.061 27 N -0.506 5.506 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.409 0.591 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.287 0.713 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.653 -9.106 6.070 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.133 3.867 4 H 0.115 0.885 5 N -0.367 5.367 6 C 0.361 3.639 7 O -0.443 6.443 8 C -0.141 4.141 9 C -0.224 4.224 10 C -0.112 4.112 11 C -0.237 4.237 12 C 0.066 3.934 13 C -0.523 4.523 14 H 0.103 0.897 15 C -0.185 4.185 16 N -0.448 5.448 17 Si 0.803 3.197 18 H -0.175 1.175 19 H -0.194 1.194 20 H -0.189 1.189 21 C -0.145 4.145 22 C -0.117 4.117 23 N -0.094 5.094 24 O 0.024 5.976 25 C -0.026 4.026 26 C -0.118 4.118 27 N -0.241 5.241 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.247 0.753 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.504 -9.184 6.462 19.962 hybrid contribution -0.649 0.484 -0.157 0.825 sum 15.855 -8.699 6.304 19.152 Atomic orbital electron populations 1.21721 0.94588 1.01623 1.01760 1.21859 0.96801 0.93040 1.03680 1.19056 0.82779 0.96121 0.88722 0.88458 1.45762 1.16733 1.58202 1.16049 1.18571 0.80966 0.76675 0.87717 1.90699 1.52245 1.60118 1.41230 1.19709 0.96854 1.03737 0.93809 1.20770 0.99195 1.08597 0.93823 1.20881 0.96007 0.97169 0.97135 1.21403 0.94973 1.07452 0.99840 1.17958 0.93574 0.90257 0.91654 1.19888 1.01765 1.35821 0.94824 0.89716 1.26865 1.05357 0.92347 0.93971 1.69889 1.39681 1.32652 1.02562 0.85144 0.75896 0.78708 0.79911 1.17457 1.19450 1.18866 1.21439 0.95433 0.98491 0.99156 1.25621 0.99219 1.00635 0.86258 1.74576 0.90443 1.21198 1.23145 1.85266 1.23278 1.62174 1.26916 1.29965 0.96575 0.91950 0.84084 1.20827 0.88123 1.06524 0.96364 1.71884 1.02757 1.22321 1.27091 0.93174 0.94737 0.90895 0.90673 0.89039 0.75344 0.85843 0.84602 0.87188 0.90214 0.87826 0.85439 0.85649 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.51 71.98 0.61 -3.80 16 2 C -0.11 -3.15 5.59 30.59 0.17 -2.98 16 3 C 0.24 7.58 2.80 44.24 0.12 7.70 16 4 H 0.10 3.47 7.58 -2.39 -0.02 3.45 16 5 N -0.71 -25.37 4.97 -448.94 -2.23 -27.60 16 6 C 0.57 25.59 6.34 86.80 0.55 26.14 16 7 O -0.56 -28.39 13.47 -3.89 -0.05 -28.44 16 8 C -0.14 -6.70 5.87 -20.13 -0.12 -6.82 16 9 C -0.20 -8.53 9.55 22.70 0.22 -8.31 16 10 C -0.09 -3.88 10.01 22.18 0.22 -3.66 16 11 C -0.22 -10.33 9.78 22.77 0.22 -10.11 16 12 C 0.07 3.72 5.57 -21.32 -0.12 3.61 16 13 C -0.49 -26.98 9.05 23.47 0.21 -26.76 16 14 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 15 C 0.03 1.56 5.14 85.26 0.44 2.00 16 16 N -0.82 -45.85 10.95 21.83 0.24 -45.61 16 17 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 18 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 C -0.12 -6.97 8.24 23.01 0.19 -6.79 16 22 C 0.16 4.41 7.01 138.46 0.97 5.38 16 23 N -0.39 -10.21 11.86 -60.32 -0.72 -10.93 16 24 O 0.09 1.77 11.31 74.85 0.85 2.61 16 25 C 0.19 3.33 8.51 88.38 0.75 4.08 16 26 C -0.06 -0.26 10.51 71.24 0.75 0.48 16 27 N -0.51 -12.81 11.55 -303.20 -3.50 -16.32 16 28 H 0.05 1.70 7.84 -2.39 -0.02 1.68 16 29 H 0.03 1.31 5.64 -2.39 -0.01 1.29 16 30 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.41 13.32 6.37 -92.71 -0.59 12.73 16 34 H 0.12 4.24 6.38 -2.91 -0.02 4.22 16 35 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.29 14.70 8.30 -92.70 -0.77 13.93 16 38 H 0.10 6.39 5.74 -2.91 -0.02 6.37 16 39 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -71.58 348.23 2.30 -69.29 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.49 Total: 35.12 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 5.19 Total: -19.83 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -6.21 Total: -100.46 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: 0.79 Total: -25.83 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -71.58 2.30 -69.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457449057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.007 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds