Wall clock time and date at job start Tue Mar 31 2020 12:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00340 * 2 1 4 4 N 1.46902 * 109.47015 * 124.14204 * 3 2 1 5 5 C 1.46900 * 111.00187 * 300.26476 * 4 3 2 6 6 C 1.50699 * 109.47070 * 288.16171 * 5 4 3 7 7 H 1.08001 * 119.99977 * 354.74861 * 6 5 4 8 8 C 1.37873 * 120.00222 * 174.74043 * 6 5 4 9 9 N 1.31517 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00537 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46892 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47028 * 120.00218 * 10 8 6 13 13 H 1.48497 * 109.47102 * 240.00437 * 10 8 6 14 14 C 1.46901 * 110.99682 * 64.22122 * 4 3 2 15 15 N 1.46497 * 109.47301 * 66.04679 * 14 4 3 16 16 N 1.28389 * 124.36312 * 270.76367 * 15 14 4 17 17 C 1.31636 * 111.95641 * 179.97438 * 16 15 14 18 18 C 1.47240 * 126.83039 * 179.44302 * 17 16 15 19 19 O 1.21529 * 119.99775 * 180.02562 * 18 17 16 20 20 O 1.34783 * 120.00289 * 0.03873 * 18 17 16 21 21 C 1.46915 * 106.33775 * 359.47488 * 17 16 15 22 22 C 1.39180 * 135.55388 * 180.02562 * 21 17 16 23 23 C 1.36721 * 119.51080 * 179.72504 * 22 21 17 24 24 C 1.38896 * 120.52022 * 0.25026 * 23 22 21 25 25 C 1.36688 * 120.89436 * 0.02562 * 24 23 22 26 26 C 1.37058 * 124.36849 * 89.99642 * 15 14 4 27 27 H 1.07997 * 119.99874 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00318 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99276 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47160 * 4.14499 * 3 2 1 31 31 H 1.09000 * 109.47053 * 244.14669 * 3 2 1 32 32 H 1.08997 * 109.47071 * 48.16126 * 5 4 3 33 33 H 1.08994 * 109.46653 * 168.16864 * 5 4 3 34 34 H 0.96996 * 120.00398 * 179.97438 * 9 8 6 35 35 H 1.08989 * 109.47156 * 306.03933 * 14 4 3 36 36 H 1.09001 * 109.46596 * 186.04416 * 14 4 3 37 37 H 0.96698 * 117.00499 * 180.02562 * 20 18 17 38 38 H 1.08002 * 120.24340 * 359.97438 * 22 21 17 39 39 H 1.07997 * 119.73908 * 180.22732 * 23 22 21 40 40 H 1.08000 * 119.55346 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.10526 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9816 1.3403 1.1463 5 6 2.2477 1.2142 2.4126 6 6 1.4886 2.4878 2.6822 7 1 1.6117 3.3386 2.0284 8 6 0.6367 2.5669 3.7634 9 7 0.4870 1.5310 4.5597 10 14 -0.3049 4.1453 4.0972 11 1 0.0365 5.1537 3.0620 12 1 -1.7635 3.8694 4.0569 13 1 0.0633 4.6672 5.4378 14 6 4.0111 0.2991 1.0285 15 7 4.8740 0.5931 -0.1183 16 7 4.6516 0.1866 -1.3157 17 6 5.5818 0.5924 -2.1540 18 6 5.6557 0.3062 -3.5964 19 8 6.5762 0.7462 -4.2568 20 8 4.7024 -0.4435 -4.1845 21 6 6.5321 1.3869 -1.3639 22 6 7.7075 2.0831 -1.6301 23 6 8.3478 2.7368 -0.6142 24 6 7.8370 2.7058 0.6770 25 6 6.6872 2.0232 0.9607 26 6 6.0148 1.3500 -0.0542 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3576 2.1322 0.0743 31 1 2.6333 1.3955 -0.9248 32 1 1.5479 0.3813 2.3455 33 1 2.9522 1.0325 3.2242 34 1 -0.1120 1.5867 5.3206 35 1 3.5331 -0.6698 0.8846 36 1 4.6110 0.2768 1.9383 37 1 4.7939 -0.6047 -5.1336 38 1 8.1086 2.1102 -2.6325 39 1 9.2581 3.2813 -0.8174 40 1 8.3557 3.2273 1.4678 41 1 6.3016 2.0072 1.9694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:49 Heat of formation + Delta-G solvation = 20.969254 kcal Electronic energy + Delta-G solvation = -26049.389665 eV Core-core repulsion = 22317.150376 eV Total energy + Delta-G solvation = -3732.239290 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.61431 -40.93323 -39.32010 -38.50214 -37.10407 -34.90494 -34.59697 -33.15997 -31.36067 -31.12244 -29.30413 -28.13581 -26.25212 -25.04116 -23.97857 -23.24492 -22.68338 -21.52425 -20.44575 -19.41050 -18.65007 -18.33014 -17.90616 -17.69394 -17.08361 -16.72959 -16.58287 -16.21258 -16.15886 -15.75498 -15.29025 -15.03498 -14.80730 -14.46151 -14.30594 -14.07879 -13.40605 -13.26073 -13.03674 -12.89024 -12.84106 -12.67422 -12.59127 -12.47215 -12.26425 -12.21212 -12.10862 -12.06276 -11.75271 -11.42899 -11.11532 -10.60350 -10.25518 -9.77048 -9.33978 -9.02937 -8.19221 -6.27173 -0.30932 0.33172 0.69728 1.16215 1.39116 1.40301 1.42937 1.53968 1.94856 1.97978 2.40608 2.80795 3.13870 3.14894 3.22285 3.40537 3.91497 3.94908 3.98917 4.06349 4.09832 4.26302 4.33563 4.43877 4.46764 4.54086 4.78259 4.90082 4.97780 5.03248 5.12257 5.19613 5.25105 5.40794 5.48211 5.53562 5.57978 5.67062 5.67532 5.83809 5.95709 5.96752 6.17501 6.41026 6.69193 6.85581 6.98972 7.41479 8.90682 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.004065 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.462389 B = 6886.608212 C = 8183.375721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.188 4.188 3 C 0.098 3.902 4 N -0.547 5.547 5 C 0.214 3.786 6 C -0.515 4.515 7 H 0.053 0.947 8 C 0.015 3.985 9 N -0.926 5.926 10 Si 0.956 3.044 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.286 3.714 15 N -0.293 5.293 16 N -0.184 5.184 17 C -0.031 4.031 18 C 0.588 3.412 19 O -0.527 6.527 20 O -0.498 6.498 21 C -0.126 4.126 22 C -0.070 4.070 23 C -0.123 4.123 24 C -0.080 4.080 25 C -0.116 4.116 26 C 0.059 3.941 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.066 0.934 32 H -0.003 1.003 33 H 0.015 0.985 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.437 0.563 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 -2.207 -11.191 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.207 4.207 3 C -0.030 4.030 4 N -0.272 5.272 5 C 0.089 3.911 6 C -0.554 4.554 7 H 0.071 0.929 8 C -0.184 4.184 9 N -0.566 5.566 10 Si 0.782 3.218 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.204 1.204 14 C 0.077 3.923 15 N -0.088 5.088 16 N -0.017 5.017 17 C -0.197 4.197 18 C 0.431 3.569 19 O -0.415 6.415 20 O -0.311 6.311 21 C -0.133 4.133 22 C -0.090 4.090 23 C -0.142 4.142 24 C -0.101 4.101 25 C -0.137 4.137 26 C -0.052 4.052 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.014 0.986 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.299 0.701 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.873 -2.277 -10.640 16.105 hybrid contribution -0.711 0.072 -0.184 0.738 sum 11.163 -2.205 -10.824 15.704 Atomic orbital electron populations 1.23870 0.95878 1.01986 0.99154 1.23368 0.96945 0.99019 1.01378 1.21094 0.94207 0.95038 0.92665 1.62234 1.14812 1.45563 1.04589 1.19388 0.91490 0.96336 0.83929 1.21284 1.24350 0.98929 1.10802 0.92863 1.25640 0.97571 0.99342 0.95846 1.70038 1.38623 1.31344 1.16643 0.85526 0.78260 0.79908 0.78086 1.19446 1.20670 1.20404 1.22483 0.89962 0.94834 0.85034 1.45706 1.18767 1.38599 1.05769 1.72950 1.21647 1.15958 0.91170 1.21578 0.97220 1.08623 0.92236 1.18797 0.78783 0.74408 0.84959 1.90876 1.35005 1.51320 1.64304 1.84629 1.48924 1.65088 1.32456 1.19581 0.98855 1.03574 0.91284 1.20482 0.92168 0.95294 1.01032 1.21235 1.01337 0.99714 0.91918 1.21176 0.94025 0.96733 0.98132 1.20197 0.96606 0.98995 0.97868 1.19466 0.90044 0.98865 0.96785 0.89255 0.87231 0.87416 0.91584 0.91598 0.98555 0.96692 0.92710 0.90288 0.86003 0.70063 0.84357 0.81852 0.81776 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 14.32 67.78 0.97 -4.90 16 2 C -0.19 -6.71 7.42 25.64 0.19 -6.52 16 3 C 0.10 3.81 5.51 85.55 0.47 4.28 16 4 N -0.55 -22.03 4.80 -917.78 -4.40 -26.43 16 5 C 0.21 10.22 4.59 85.56 0.39 10.61 16 6 C -0.52 -27.37 8.53 25.60 0.22 -27.15 16 7 H 0.05 2.89 7.66 -2.91 -0.02 2.87 16 8 C 0.01 0.80 5.46 84.65 0.46 1.26 16 9 N -0.93 -52.18 13.29 21.45 0.28 -51.89 16 10 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.29 9.58 5.75 170.81 0.98 10.56 16 15 N -0.29 -9.65 3.18 -349.23 -1.11 -10.76 16 16 N -0.18 -6.16 10.50 -44.94 -0.47 -6.63 16 17 C -0.03 -0.98 7.36 43.81 0.32 -0.66 16 18 C 0.59 16.37 8.33 70.19 0.58 16.96 16 19 O -0.53 -15.71 17.18 19.74 0.34 -15.37 16 20 O -0.50 -10.72 13.44 -56.94 -0.77 -11.48 16 21 C -0.13 -3.85 6.34 -20.14 -0.13 -3.98 16 22 C -0.07 -1.73 9.87 22.14 0.22 -1.51 16 23 C -0.12 -2.35 9.98 22.07 0.22 -2.13 16 24 C -0.08 -1.59 9.96 22.06 0.22 -1.37 16 25 C -0.12 -3.00 9.94 22.12 0.22 -2.78 16 26 C 0.06 1.84 6.85 39.18 0.27 2.11 16 27 H 0.09 3.19 7.84 -2.91 -0.02 3.17 16 28 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.11 3.61 6.80 -2.91 -0.02 3.59 16 30 H 0.07 2.83 7.04 -2.39 -0.02 2.82 16 31 H 0.07 2.54 6.53 -2.39 -0.02 2.53 16 32 H 0.00 -0.17 6.71 -2.39 -0.02 -0.19 16 33 H 0.02 0.75 7.81 -2.39 -0.02 0.73 16 34 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.08 2.54 6.34 -2.39 -0.02 2.53 16 36 H 0.12 3.70 7.81 -2.39 -0.02 3.68 16 37 H 0.44 4.24 9.11 -74.06 -0.67 3.56 16 38 H 0.14 3.21 7.65 -2.91 -0.02 3.19 16 39 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 41 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -66.82 355.28 1.91 -64.91 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.39 Total: 18.11 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.61 Total: -5.20 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -5.70 Total: -95.72 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.43 Total: -26.86 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -66.82 1.91 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.876 kcal (2) G-P(sol) polarization free energy of solvation -66.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds