Wall clock time and date at job start Tue Mar 31 2020 11:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48496 * 109.47384 * 240.00021 * 3 2 1 5 5 H 1.48498 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46806 * 120.00321 * 3 2 1 7 7 C 1.37877 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99486 * 359.71819 * 7 2 1 10 10 H 1.09004 * 109.49437 * 60.34400 * 9 7 2 11 11 C 1.53042 * 109.49591 * 180.44071 * 9 7 2 12 12 C 1.53038 * 109.53782 * 181.32160 * 11 9 7 13 13 C 1.53192 * 109.31177 * 298.63396 * 12 11 9 14 14 N 1.46924 * 108.77683 * 54.63448 * 13 12 11 15 15 C 1.34774 * 120.63220 * 126.41250 * 14 13 12 16 16 O 1.21594 * 120.00117 * 175.44067 * 15 14 13 17 17 N 1.34788 * 119.99750 * 355.44238 * 15 14 13 18 18 C 1.40386 * 119.99945 * 187.41512 * 17 15 14 19 19 C 1.40684 * 120.40628 * 31.74185 * 18 17 15 20 20 N 1.31183 * 120.31905 * 179.74815 * 19 18 17 21 21 C 1.34060 * 121.03495 * 0.54146 * 20 19 18 22 22 N 1.32618 * 131.84080 * 179.74265 * 21 20 19 23 23 C 1.33586 * 109.24972 * 179.97438 * 22 21 20 24 24 C 1.35052 * 108.61060 * 0.02562 * 23 22 21 25 25 N 1.36813 * 107.09894 * 0.02562 * 24 23 22 26 26 C 1.36082 * 120.40441 * 212.02513 * 18 17 15 27 27 C 1.46928 * 118.73809 * 306.39624 * 14 13 12 28 28 H 0.97000 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46071 * 301.33951 * 11 9 7 30 30 H 1.08997 * 109.45824 * 61.29666 * 11 9 7 31 31 H 1.09007 * 109.49725 * 178.68250 * 12 11 9 32 32 H 1.08999 * 109.50048 * 58.58319 * 12 11 9 33 33 H 1.09004 * 109.58676 * 294.84792 * 13 12 11 34 34 H 1.09001 * 109.58465 * 174.42694 * 13 12 11 35 35 H 0.96991 * 119.99762 * 7.41490 * 17 15 14 36 36 H 1.08004 * 119.84388 * 0.02909 * 19 18 17 37 37 H 1.08001 * 125.69681 * 180.02562 * 23 22 21 38 38 H 1.07999 * 126.44907 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.50700 * 359.95746 * 26 18 17 40 40 H 1.08996 * 109.58274 * 293.81464 * 27 14 13 41 41 H 1.09000 * 109.69914 * 173.46328 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 0.0053 10 1 0.6251 -2.5617 -0.8849 11 6 2.2451 -3.6628 0.0145 12 6 1.4812 -4.9886 -0.0128 13 6 0.6028 -5.0931 1.2379 14 7 -0.2559 -3.9034 1.3135 15 6 -1.5925 -4.0277 1.4334 16 8 -2.2846 -3.0385 1.5783 17 7 -2.1621 -5.2487 1.3928 18 6 -3.5603 -5.3703 1.3608 19 6 -4.3461 -4.3892 0.7289 20 7 -5.6522 -4.5071 0.6957 21 6 -6.2666 -5.5520 1.2683 22 7 -7.5480 -5.8795 1.3669 23 6 -7.6583 -7.0291 2.0382 24 6 -6.4210 -7.4496 2.3791 25 7 -5.5351 -6.5242 1.8989 26 6 -4.1725 -6.4357 1.9456 27 6 0.3702 -2.5754 1.2562 28 1 -0.4850 0.8401 0.0004 29 1 2.8895 -3.5969 -0.8622 30 1 2.8540 -3.6130 0.9171 31 1 2.1900 -5.8166 -0.0299 32 1 0.8531 -5.0284 -0.9028 33 1 1.2345 -5.1447 2.1248 34 1 -0.0168 -5.9877 1.1756 35 1 -1.6059 -6.0432 1.3856 36 1 -3.8715 -3.5372 0.2649 37 1 -8.5826 -7.5375 2.2697 38 1 -6.1769 -8.3470 2.9282 39 1 -3.5903 -7.1992 2.4398 40 1 0.9828 -2.4217 2.1445 41 1 -0.4015 -1.8072 1.2071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888990237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:15 Heat of formation + Delta-G solvation = 94.853258 kcal Electronic energy + Delta-G solvation = -25958.487511 eV Core-core repulsion = 22261.744823 eV Total energy + Delta-G solvation = -3696.742688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.05512 -40.51732 -38.43300 -36.96915 -35.15005 -34.28876 -33.43041 -32.00165 -30.07242 -29.36218 -29.23327 -25.23722 -25.00936 -24.83477 -23.06472 -22.01353 -21.86412 -20.62726 -19.48332 -18.50911 -18.09712 -17.50779 -16.60502 -16.38843 -16.19010 -15.72421 -15.04535 -14.75241 -14.43966 -14.23404 -14.04509 -13.97185 -13.64215 -13.52462 -13.17478 -12.76432 -12.62564 -12.29932 -12.08251 -12.02286 -11.12707 -11.00195 -10.74699 -10.62887 -10.55602 -10.42401 -10.31679 -10.03946 -9.91826 -9.83936 -9.24259 -9.10462 -8.57120 -8.50142 -8.21911 -7.91498 -6.07361 -4.16338 0.41319 0.96022 2.09601 2.59672 2.76797 3.28201 3.32391 3.35321 3.35768 3.59551 3.63360 3.87321 4.15220 4.29992 4.37834 4.67241 4.92482 4.99165 5.11417 5.22752 5.24263 5.28421 5.41806 5.67739 5.77690 5.94335 5.96928 6.12730 6.15248 6.32008 6.41270 6.48309 6.55490 6.60883 6.80836 6.84423 7.07231 7.14557 7.46545 7.57681 7.76701 7.88854 7.91160 8.13247 8.28933 8.72748 8.87421 9.49981 10.97955 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.003164 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.293818 B = 8847.544818 C = 9864.856841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.111 3.889 14 N -0.609 5.609 15 C 0.699 3.301 16 O -0.560 6.560 17 N -0.682 5.682 18 C 0.121 3.879 19 C 0.190 3.810 20 N -0.421 5.421 21 C 0.365 3.635 22 N -0.475 5.475 23 C 0.042 3.958 24 C -0.102 4.102 25 N -0.379 5.379 26 C 0.039 3.961 27 C 0.125 3.875 28 H 0.266 0.734 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.407 0.593 36 H 0.199 0.801 37 H 0.186 0.814 38 H 0.184 0.816 39 H 0.174 0.826 40 H 0.045 0.955 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 -18.589 4.828 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.013 4.013 14 N -0.345 5.345 15 C 0.401 3.599 16 O -0.436 6.436 17 N -0.335 5.335 18 C 0.019 3.981 19 C 0.000 4.000 20 N -0.132 5.132 21 C 0.016 3.984 22 N -0.197 5.197 23 C -0.112 4.112 24 C -0.234 4.234 25 N -0.056 5.056 26 C -0.097 4.097 27 C 0.006 3.994 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.215 0.785 37 H 0.203 0.797 38 H 0.201 0.799 39 H 0.191 0.809 40 H 0.063 0.937 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.737 -16.686 4.248 18.149 hybrid contribution 2.087 -0.806 0.844 2.392 sum -3.650 -17.493 5.092 18.581 Atomic orbital electron populations 1.69838 1.05716 1.27200 1.48874 1.25045 0.94914 0.99304 0.94671 0.86640 0.79588 0.83107 0.78581 1.20269 1.21184 1.20257 1.21010 0.92898 0.89991 1.52333 0.92342 1.18991 0.92589 0.92389 0.93930 0.95156 1.21632 0.98605 0.93853 1.00809 1.21955 0.98650 0.99442 0.97169 1.21616 0.93457 0.86873 0.99325 1.47909 1.02812 1.09715 1.74034 1.15916 0.83188 0.82194 0.78601 1.90984 1.61223 1.35759 1.55599 1.42880 1.02832 1.09453 1.78327 1.17782 0.85111 0.96246 0.98990 1.23839 0.86932 0.97499 0.91723 1.68062 1.10425 1.17306 1.17422 1.22133 0.88526 0.88607 0.99092 1.70726 1.12102 1.15091 1.21772 1.22566 0.97235 0.93150 0.98252 1.22561 0.89133 0.99100 1.12648 1.43698 1.05736 1.19650 1.36523 1.21380 0.82179 1.02796 1.03320 1.22390 0.98591 0.79726 0.98732 0.92409 0.92807 0.93055 0.92035 0.91966 0.91443 0.92233 0.75405 0.78459 0.79699 0.79911 0.80928 0.93699 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.43 11.38 55.43 0.63 -23.80 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.37 8.57 -34.44 -0.30 -13.67 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.91 2.25 -91.65 -0.21 0.70 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -1.97 5.11 -26.69 -0.14 -2.11 16 12 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 13 C 0.11 1.38 6.42 -3.71 -0.02 1.36 16 14 N -0.61 -10.50 2.97 -178.50 -0.53 -11.03 16 15 C 0.70 12.09 8.04 -86.91 -0.70 11.39 16 16 O -0.56 -12.13 13.49 5.28 0.07 -12.06 16 17 N -0.68 -8.34 5.27 -14.32 -0.08 -8.42 16 18 C 0.12 1.56 6.28 -83.79 -0.53 1.03 16 19 C 0.19 3.01 9.90 -16.91 -0.17 2.84 16 20 N -0.42 -7.31 10.47 -13.59 -0.14 -7.46 16 21 C 0.36 5.94 8.92 -322.56 -2.88 3.06 16 22 N -0.47 -7.59 11.32 -14.46 -0.16 -7.75 16 23 C 0.04 0.47 11.83 -17.92 -0.21 0.26 16 24 C -0.10 -1.00 11.77 -16.46 -0.19 -1.19 16 25 N -0.38 -4.75 2.95 -64.22 -0.19 -4.94 16 26 C 0.04 0.41 10.98 -16.19 -0.18 0.23 16 27 C 0.13 2.75 5.38 -3.71 -0.02 2.73 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.51 5.58 -51.93 -0.29 0.22 16 35 H 0.41 3.44 6.29 -40.82 -0.26 3.19 16 36 H 0.20 3.39 6.44 -52.48 -0.34 3.06 16 37 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.13 3.30 5.14 -51.93 -0.27 3.03 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -33.10 336.19 -11.06 -44.16 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.92 Total: 4.44 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -5.79 Total: 6.27 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.47 Total: -63.40 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.10 -11.06 -44.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888990237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.014 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds