Wall clock time and date at job start Tue Mar 31 2020 11:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21571 * 120.00452 * 0.02562 * 16 15 14 18 18 C 1.47690 * 119.99641 * 180.02562 * 16 15 14 19 19 C 1.39992 * 120.38208 * 0.02562 * 18 16 15 20 20 N 1.31381 * 121.15506 * 179.97438 * 19 18 16 21 21 C 1.32548 * 121.80062 * 359.97438 * 20 19 18 22 22 N 1.37575 * 133.57142 * 179.97438 * 21 20 19 23 23 H 0.97001 * 126.23656 * 0.02562 * 22 21 20 24 24 C 1.36173 * 107.52329 * 180.02562 * 22 21 20 25 25 N 1.30056 * 110.11593 * 0.02562 * 24 22 21 26 26 C 1.35778 * 109.43367 * 359.97438 * 25 24 22 27 27 C 1.39485 * 133.74768 * 180.28501 * 26 25 24 28 28 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 29 29 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 30 30 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 31 31 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 32 32 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 33 33 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 34 34 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 35 35 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 36 36 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 37 37 H 1.07997 * 119.42161 * 359.95367 * 19 18 16 38 38 H 1.08001 * 124.93968 * 180.02562 * 24 22 21 39 39 H 1.07998 * 120.97345 * 359.93845 * 27 26 25 40 40 H 1.08998 * 109.88206 * 59.48273 * 28 9 7 41 41 H 1.09007 * 109.88177 * 298.32145 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1755 -8.1700 2.0146 18 6 3.6583 -8.6860 0.2856 19 6 4.1721 -8.3336 -0.9681 20 7 5.0994 -9.0591 -1.5510 21 6 5.5903 -10.1520 -0.9841 22 7 6.5401 -11.0722 -1.3634 23 1 7.0501 -11.0630 -2.1884 24 6 6.6337 -11.9983 -0.3695 25 7 5.8064 -11.7085 0.5913 26 6 5.1274 -10.5756 0.2765 27 6 4.1468 -9.8266 0.9268 28 6 1.9319 -3.7274 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5290 -2.4860 -1.0162 31 1 -0.5991 -1.7588 0.6182 32 1 -1.3585 -4.3328 0.2810 33 1 -0.3505 -3.8984 1.7017 34 1 1.4902 -5.5610 1.8930 35 1 0.2283 -6.5362 1.1025 36 1 2.5066 -6.5062 -0.5666 37 1 3.7994 -7.4500 -1.4648 38 1 7.2982 -12.8496 -0.3779 39 1 3.7732 -10.1223 1.8960 40 1 2.5596 -3.8509 0.8809 41 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028570607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:40 Heat of formation + Delta-G solvation = 79.046813 kcal Electronic energy + Delta-G solvation = -24865.285211 eV Core-core repulsion = 21167.857105 eV Total energy + Delta-G solvation = -3697.428107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.78488 -40.07868 -38.31532 -37.55627 -34.78270 -34.07115 -32.61645 -31.71289 -30.51691 -29.60033 -28.20388 -25.80524 -24.64427 -24.21406 -23.17903 -22.18717 -20.92507 -20.05834 -19.72059 -19.09255 -18.18147 -17.32561 -16.85252 -16.40849 -16.16286 -15.75040 -15.26298 -14.82653 -14.63650 -14.50402 -14.12667 -13.68186 -13.56929 -13.39379 -13.15198 -12.70689 -12.50588 -11.78431 -11.74032 -11.59114 -11.50781 -11.49741 -10.96146 -10.79045 -10.48992 -10.24700 -10.11692 -10.00312 -9.80950 -9.60802 -9.49700 -9.34785 -9.07563 -8.95161 -8.64724 -6.83583 -5.65437 -3.07129 0.34282 0.44481 2.05840 2.28988 2.72277 3.01046 3.40661 3.44866 3.46151 3.55346 3.66167 3.94569 4.25617 4.44365 4.48647 4.56267 4.62217 4.91752 5.12610 5.24251 5.30342 5.39034 5.52361 5.62005 5.67920 5.70721 5.87747 6.00454 6.06136 6.10575 6.34430 6.37503 6.54846 6.57656 6.58469 6.71034 6.90187 7.18082 7.35676 7.44519 7.51205 7.62357 7.85748 8.12216 8.36505 9.22107 9.83120 10.47729 11.38508 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002406 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.628772 B =11632.647989 C =12412.779417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.132 3.868 15 N -0.718 5.718 16 C 0.566 3.434 17 O -0.536 6.536 18 C -0.196 4.196 19 C 0.177 3.823 20 N -0.484 5.484 21 C 0.256 3.744 22 N -0.588 5.588 23 H 0.431 0.569 24 C 0.276 3.724 25 N -0.480 5.480 26 C -0.009 4.009 27 C 0.048 3.952 28 C 0.141 3.859 29 H 0.253 0.747 30 H 0.012 0.988 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.400 0.600 37 H 0.172 0.828 38 H 0.228 0.772 39 H 0.157 0.843 40 H 0.025 0.975 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.135 -23.496 -3.901 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.369 5.369 16 C 0.352 3.648 17 O -0.414 6.414 18 C -0.204 4.204 19 C 0.007 3.993 20 N -0.196 5.196 21 C 0.019 3.981 22 N -0.203 5.203 23 H 0.271 0.729 24 C -0.013 4.013 25 N -0.199 5.199 26 C -0.129 4.129 27 C 0.020 3.980 28 C 0.014 3.986 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.189 0.811 38 H 0.244 0.756 39 H 0.175 0.825 40 H 0.043 0.957 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.969 -23.726 -3.121 25.924 hybrid contribution 0.880 1.098 -0.999 1.726 sum 10.849 -22.628 -4.120 25.431 Atomic orbital electron populations 1.69786 1.04877 1.24899 1.57570 1.24788 0.95737 0.97727 1.02438 0.86151 0.78402 0.83048 0.77884 1.21239 1.21567 1.21161 1.19028 0.90465 0.82510 1.43157 0.90592 1.44504 1.01987 0.99713 1.86867 1.21947 0.84654 0.92512 0.98212 1.23007 0.95500 0.98561 1.00366 1.22458 0.98392 0.93955 0.98667 0.90474 1.21530 0.89969 0.90950 0.96610 1.45984 1.41738 1.26022 1.23142 1.17770 0.81413 0.80637 0.84959 1.90797 1.59171 1.71063 1.20369 1.20721 1.02640 0.99136 0.97937 1.22798 0.89443 0.96418 0.90597 1.66408 1.12673 1.04597 1.35934 1.19162 0.93587 0.92143 0.93210 1.42895 1.34106 1.21955 1.21330 0.72903 1.25559 0.98374 0.94299 0.83027 1.70510 1.09081 1.13654 1.26628 1.19571 1.01666 0.96632 0.94981 1.20870 0.89048 0.89268 0.98770 1.21346 0.93457 0.85981 0.97779 0.93671 0.96982 0.87538 0.92082 0.91780 0.90874 0.91268 0.76446 0.81102 0.75613 0.82548 0.95724 0.96357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.09 55.49 0.56 -26.17 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.60 -15.21 3.40 -170.04 -0.58 -15.78 16 10 C 0.15 3.59 5.89 -2.50 -0.01 3.58 16 11 C -0.14 -2.43 6.53 -24.58 -0.16 -2.59 16 12 C -0.12 -1.83 2.95 -88.79 -0.26 -2.09 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.13 1.85 5.02 -4.04 -0.02 1.83 16 15 N -0.72 -8.67 5.42 -61.29 -0.33 -9.01 16 16 C 0.57 7.55 7.77 -12.40 -0.10 7.46 16 17 O -0.54 -8.98 16.40 5.30 0.09 -8.90 16 18 C -0.20 -2.24 5.89 -104.85 -0.62 -2.86 16 19 C 0.18 1.77 10.69 -17.09 -0.18 1.59 16 20 N -0.48 -5.25 10.36 -11.96 -0.12 -5.37 16 21 C 0.26 2.63 8.45 -155.63 -1.31 1.31 16 22 N -0.59 -3.59 6.20 -13.22 -0.08 -3.67 16 23 H 0.43 1.19 8.96 -40.82 -0.37 0.83 16 24 C 0.28 1.54 12.97 -89.70 -1.16 0.37 16 25 N -0.48 -4.85 11.29 -12.02 -0.14 -4.98 16 26 C -0.01 -0.10 7.23 -84.69 -0.61 -0.71 16 27 C 0.05 0.57 9.75 -38.58 -0.38 0.19 16 28 C 0.14 2.77 6.76 -3.07 -0.02 2.75 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.11 2.86 5.88 -51.93 -0.31 2.56 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 3.90 6.51 -40.82 -0.27 3.64 16 37 H 0.17 1.25 6.39 -52.49 -0.34 0.91 16 38 H 0.23 0.02 8.06 -52.49 -0.42 -0.40 16 39 H 0.16 1.82 7.72 -52.49 -0.41 1.41 16 40 H 0.02 0.50 7.70 -51.93 -0.40 0.10 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -36.02 343.75 -10.53 -46.55 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.99 Total: 1.11 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -5.09 Total: 4.07 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.69 Total: -64.99 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.02 -10.53 -46.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028570607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.599 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds