Wall clock time and date at job start Tue Mar 31 2020 11:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21571 * 120.00452 * 0.02562 * 16 15 14 18 18 C 1.47690 * 119.99641 * 180.02562 * 16 15 14 19 19 C 1.39992 * 120.38208 * 0.02562 * 18 16 15 20 20 N 1.31381 * 121.15506 * 179.97438 * 19 18 16 21 21 C 1.32548 * 121.80062 * 359.97438 * 20 19 18 22 22 N 1.37575 * 133.57142 * 179.97438 * 21 20 19 23 23 H 0.97001 * 126.23656 * 0.02562 * 22 21 20 24 24 C 1.36173 * 107.52329 * 180.02562 * 22 21 20 25 25 N 1.30056 * 110.11593 * 0.02562 * 24 22 21 26 26 C 1.35778 * 109.43367 * 359.97438 * 25 24 22 27 27 C 1.39485 * 133.74768 * 180.28501 * 26 25 24 28 28 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 29 29 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 30 30 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 31 31 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 32 32 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 33 33 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 34 34 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 35 35 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 36 36 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 37 37 H 1.07997 * 119.42161 * 359.95367 * 19 18 16 38 38 H 1.08001 * 124.93968 * 180.02562 * 24 22 21 39 39 H 1.07998 * 120.97345 * 359.93845 * 27 26 25 40 40 H 1.08998 * 109.88206 * 59.48273 * 28 9 7 41 41 H 1.09007 * 109.88177 * 298.32145 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1755 -8.1700 2.0146 18 6 3.6583 -8.6860 0.2856 19 6 4.1721 -8.3336 -0.9681 20 7 5.0994 -9.0591 -1.5510 21 6 5.5903 -10.1520 -0.9841 22 7 6.5401 -11.0722 -1.3634 23 1 7.0501 -11.0630 -2.1884 24 6 6.6337 -11.9983 -0.3695 25 7 5.8064 -11.7085 0.5913 26 6 5.1274 -10.5756 0.2765 27 6 4.1468 -9.8266 0.9268 28 6 1.9319 -3.7274 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5290 -2.4860 -1.0162 31 1 -0.5991 -1.7588 0.6182 32 1 -1.3585 -4.3328 0.2810 33 1 -0.3505 -3.8984 1.7017 34 1 1.4902 -5.5610 1.8930 35 1 0.2283 -6.5362 1.1025 36 1 2.5066 -6.5062 -0.5666 37 1 3.7994 -7.4500 -1.4648 38 1 7.2982 -12.8496 -0.3779 39 1 3.7732 -10.1223 1.8960 40 1 2.5596 -3.8509 0.8809 41 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028570607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:39 Heat of formation + Delta-G solvation = 53.907618 kcal Electronic energy + Delta-G solvation = -24866.375329 eV Core-core repulsion = 21167.857105 eV Total energy + Delta-G solvation = -3698.518224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.43974 -41.09017 -39.41820 -38.84089 -36.12546 -34.77954 -34.35339 -32.56090 -31.73760 -30.93212 -29.69075 -27.36912 -25.93685 -24.95480 -24.45681 -22.84741 -22.20656 -21.56779 -21.08293 -19.76486 -19.16533 -18.71547 -18.10846 -17.29333 -17.08620 -16.83582 -16.61007 -16.29413 -15.88814 -15.60292 -15.22357 -14.88927 -14.52646 -14.35477 -14.24703 -14.19170 -13.69055 -13.49936 -13.34752 -13.10303 -12.80296 -12.63446 -12.30854 -12.22336 -12.03805 -11.86330 -11.79134 -11.55674 -11.38217 -11.16617 -10.70744 -10.39607 -10.25790 -9.95118 -9.72884 -8.84435 -7.75040 -5.18662 -0.46485 -0.28490 1.47541 1.50442 1.50995 1.56745 1.66312 1.81551 2.02067 2.51519 2.70948 3.03333 3.32454 3.34397 3.56595 3.63597 3.68432 3.72397 3.85252 4.02716 4.10230 4.16145 4.25978 4.50508 4.66636 4.70096 4.74008 4.81131 4.88779 4.91993 4.96667 5.09574 5.18062 5.29283 5.34675 5.45037 5.51255 5.70682 5.86638 6.11417 6.35172 6.45713 6.58723 6.68617 7.11651 7.14139 7.82609 8.45697 9.26619 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002406 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.628772 B =11632.647989 C =12412.779417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.123 4.123 12 C -0.094 4.094 13 H 0.101 0.899 14 C 0.144 3.856 15 N -0.707 5.707 16 C 0.571 3.429 17 O -0.576 6.576 18 C -0.201 4.201 19 C 0.177 3.823 20 N -0.492 5.492 21 C 0.243 3.757 22 N -0.574 5.574 23 H 0.448 0.552 24 C 0.306 3.694 25 N -0.527 5.527 26 C -0.025 4.025 27 C 0.032 3.968 28 C 0.135 3.865 29 H 0.246 0.754 30 H -0.009 1.009 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.197 0.803 38 H 0.283 0.717 39 H 0.146 0.854 40 H 0.021 0.979 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -25.433 -5.291 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.113 4.113 13 H 0.119 0.881 14 C 0.020 3.980 15 N -0.358 5.358 16 C 0.358 3.642 17 O -0.456 6.456 18 C -0.209 4.209 19 C 0.008 3.992 20 N -0.204 5.204 21 C 0.005 3.995 22 N -0.190 5.190 23 H 0.292 0.708 24 C 0.019 3.981 25 N -0.247 5.247 26 C -0.145 4.145 27 C 0.004 3.996 28 C 0.010 3.990 29 H 0.056 0.944 30 H 0.009 0.991 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.214 0.786 38 H 0.298 0.702 39 H 0.164 0.836 40 H 0.039 0.961 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.852 -25.690 -4.562 28.657 hybrid contribution 0.424 1.576 -0.591 1.735 sum 12.276 -24.114 -5.153 27.545 Atomic orbital electron populations 1.70051 1.06132 1.25008 1.58699 1.25618 0.96645 1.00939 1.02928 0.85152 0.77127 0.78923 0.78131 1.20353 1.22018 1.20523 1.19412 0.90987 0.83943 1.42375 0.90273 1.44830 1.02847 1.01016 1.86820 1.21746 0.84052 0.94932 0.96668 1.22845 0.97874 0.95422 1.00026 1.22298 0.95643 0.93190 1.00165 0.88102 1.21280 0.90830 0.90490 0.95407 1.45809 1.41155 1.25354 1.23514 1.17984 0.81259 0.80605 0.84366 1.90777 1.60611 1.72102 1.22158 1.20520 1.02658 0.99048 0.98639 1.23123 0.89123 0.96992 0.89990 1.66494 1.12947 1.04954 1.36028 1.19449 0.94387 0.92532 0.93125 1.42991 1.33043 1.20845 1.22146 0.70827 1.26708 0.96413 0.94051 0.80967 1.70519 1.11130 1.14048 1.28973 1.19725 1.01852 0.97318 0.95573 1.20890 0.89918 0.90006 0.98756 1.21551 0.94825 0.84605 0.98010 0.94395 0.99068 0.91272 0.89159 0.91952 0.92521 0.90141 0.74853 0.78634 0.70177 0.83637 0.96108 0.94976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.57 10.09 21.65 0.22 -56.36 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.75 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.24 -13.30 10.27 84.03 0.86 -12.44 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -31.81 3.40 -691.89 -2.35 -34.16 16 10 C 0.15 7.27 5.89 86.85 0.51 7.78 16 11 C -0.12 -4.26 6.53 31.98 0.21 -4.05 16 12 C -0.09 -2.77 2.95 -9.61 -0.03 -2.80 16 13 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 14 C 0.14 3.76 5.02 86.38 0.43 4.19 16 15 N -0.71 -15.85 5.42 -466.11 -2.53 -18.38 16 16 C 0.57 14.91 7.77 86.74 0.67 15.58 16 17 O -0.58 -19.48 16.40 -3.94 -0.06 -19.55 16 18 C -0.20 -4.50 5.89 -20.01 -0.12 -4.62 16 19 C 0.18 3.29 10.69 85.19 0.91 4.20 16 20 N -0.49 -9.85 10.36 -191.75 -1.99 -11.83 16 21 C 0.24 4.59 8.45 133.91 1.13 5.72 16 22 N -0.57 -5.31 6.20 -195.73 -1.21 -6.53 16 23 H 0.45 0.93 8.96 -92.71 -0.83 0.10 16 24 C 0.31 2.40 12.97 180.03 2.33 4.73 16 25 N -0.53 -9.88 11.29 -191.93 -2.17 -12.05 16 26 C -0.03 -0.56 7.23 39.46 0.29 -0.28 16 27 C 0.03 0.77 9.75 22.92 0.22 0.99 16 28 C 0.14 5.16 6.76 86.73 0.59 5.75 16 29 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 30 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 31 H 0.07 3.86 5.88 -2.39 -0.01 3.85 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 34 H 0.06 1.71 7.95 -2.38 -0.02 1.69 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 7.01 6.51 -92.71 -0.60 6.40 16 37 H 0.20 2.39 6.39 -2.91 -0.02 2.37 16 38 H 0.28 -1.42 8.06 -2.91 -0.02 -1.45 16 39 H 0.15 3.65 7.72 -2.91 -0.02 3.62 16 40 H 0.02 0.82 7.70 -2.39 -0.02 0.80 16 41 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -81.55 343.75 0.08 -81.47 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -0.34 Total: 8.32 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 8.48 Total: 21.31 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -10.03 Total: -139.30 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -81.55 0.08 -81.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028570607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.376 kcal (2) G-P(sol) polarization free energy of solvation -81.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds