Wall clock time and date at job start Tue Mar 31 2020 11:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47318 * 2 1 4 4 C 1.53009 * 109.46951 * 119.99779 * 2 1 3 5 5 H 1.08998 * 109.47090 * 294.92616 * 4 2 1 6 6 C 1.50703 * 109.46493 * 174.92397 * 4 2 1 7 7 O 1.21286 * 120.00559 * 322.52854 * 6 4 2 8 8 N 1.34780 * 119.99398 * 142.52991 * 6 4 2 9 9 C 1.37105 * 119.99593 * 184.97026 * 8 6 4 10 10 H 1.07994 * 120.00240 * 0.02562 * 9 8 6 11 11 C 1.38948 * 119.99335 * 179.97438 * 9 8 6 12 12 N 1.31401 * 120.00532 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99344 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47537 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47169 * 120.00096 * 13 11 9 16 16 H 1.48506 * 109.46784 * 239.99927 * 13 11 9 17 17 N 1.46500 * 109.47079 * 54.92646 * 4 2 1 18 18 N 1.28735 * 125.33878 * 59.97516 * 17 4 2 19 19 N 1.28987 * 108.94053 * 180.02562 * 18 17 4 20 20 C 1.34042 * 107.26877 * 359.97438 * 19 18 17 21 21 C 1.48468 * 126.67532 * 180.02562 * 20 19 18 22 22 C 1.39301 * 120.11416 * 0.02670 * 21 20 19 23 23 C 1.38032 * 119.88096 * 179.97438 * 22 21 20 24 24 C 1.38317 * 120.11286 * 359.97438 * 23 22 21 25 25 C 1.38312 * 120.23900 * 0.30123 * 24 23 22 26 26 C 1.38030 * 120.11840 * 359.44324 * 25 24 23 27 27 N 1.28867 * 125.34059 * 240.30963 * 17 4 2 28 28 H 1.09007 * 109.46790 * 299.99987 * 1 2 3 29 29 H 1.09000 * 109.47365 * 59.99875 * 1 2 3 30 30 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47038 * 239.99452 * 2 1 3 32 32 H 1.08998 * 109.47621 * 176.78086 * 3 2 1 33 33 H 1.09001 * 109.47138 * 296.78321 * 3 2 1 34 34 H 1.08998 * 109.47449 * 56.77750 * 3 2 1 35 35 H 0.96992 * 120.00015 * 4.97244 * 8 6 4 36 36 H 0.97001 * 120.00334 * 179.97438 * 12 11 9 37 37 H 1.07997 * 120.05702 * 0.02562 * 22 21 20 38 38 H 1.07992 * 119.94074 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.87757 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.94065 * 179.69710 * 25 24 23 41 41 H 1.07992 * 120.05993 * 180.29384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7527 -0.1576 2.1370 6 6 3.5418 -0.8310 1.1880 7 8 4.0918 -1.0405 0.1275 8 7 4.2736 -0.6963 2.3117 9 6 5.6429 -0.6942 2.2418 10 1 6.1350 -0.8000 1.2863 11 6 6.3974 -0.5549 3.4003 12 7 5.7986 -0.4256 4.5628 13 14 8.2630 -0.5513 3.3049 14 1 8.6868 -0.7115 1.8907 15 1 8.7833 0.7344 3.8354 16 1 8.8020 -1.6746 4.1130 17 7 1.4544 -2.0627 1.3120 18 7 1.5984 -2.9804 0.4207 19 7 0.9503 -4.0314 0.7935 20 6 0.3788 -3.7491 1.9727 21 6 -0.4676 -4.6566 2.7877 22 6 -0.7366 -5.9489 2.3427 23 6 -1.5237 -6.7887 3.1046 24 6 -2.0445 -6.3492 4.3082 25 6 -1.7852 -5.0652 4.7520 26 6 -0.9950 -4.2189 4.0005 27 7 0.7095 -2.5071 2.2650 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1285 1.4430 0.0577 33 1 1.7246 1.9394 -0.9174 34 1 1.6304 1.9727 0.8597 35 1 3.8317 -0.6010 3.1698 36 1 6.3254 -0.3287 5.3715 37 1 -0.3294 -6.2933 1.4036 38 1 -1.7332 -7.7906 2.7603 39 1 -2.6595 -7.0097 4.9015 40 1 -2.1983 -4.7254 5.6903 41 1 -0.7893 -3.2181 4.3502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:09 Heat of formation + Delta-G solvation = 107.429476 kcal Electronic energy + Delta-G solvation = -25848.265108 eV Core-core repulsion = 22152.067766 eV Total energy + Delta-G solvation = -3696.197342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.97320 -39.23174 -38.89822 -36.10444 -34.19358 -33.66223 -33.23272 -31.53687 -31.04322 -30.53450 -28.09257 -27.09387 -25.09383 -24.29337 -23.45420 -22.09227 -21.41526 -20.81357 -19.41818 -18.31146 -17.50622 -17.08851 -16.81836 -16.22711 -15.67992 -14.93583 -14.86815 -14.34872 -14.10665 -14.04225 -13.62903 -13.50808 -13.39241 -13.02087 -13.01393 -12.80211 -12.41884 -12.13210 -11.85396 -11.80535 -11.45896 -11.40106 -11.23959 -11.17922 -11.03307 -10.73411 -10.64440 -10.57620 -10.52547 -10.49371 -10.39688 -9.76460 -9.04919 -8.79712 -8.49753 -8.24970 -6.67273 -4.07302 0.83100 1.30640 1.65604 1.97956 2.63298 3.04872 3.15654 3.22408 3.66723 3.80637 3.91431 3.95915 4.26721 4.57171 4.67636 4.84569 4.85635 5.00741 5.02081 5.07118 5.19739 5.26454 5.33004 5.51657 5.55957 5.60453 5.69081 5.77699 5.85109 5.85710 5.94179 5.96580 6.04394 6.11107 6.33539 6.37419 6.40235 6.43117 6.46332 6.55197 6.81997 7.32180 7.75098 8.28321 8.69985 8.89703 9.19138 9.68642 10.48672 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003919 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.198583 B = 7143.647275 C = 8573.242128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.142 4.142 4 C 0.150 3.850 5 H 0.123 0.877 6 C 0.419 3.581 7 O -0.563 6.563 8 N -0.536 5.536 9 C -0.303 4.303 10 H 0.110 0.890 11 C 0.029 3.971 12 N -0.886 5.886 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.278 1.278 17 N -0.111 5.111 18 N -0.032 5.032 19 N -0.288 5.288 20 C 0.191 3.809 21 C -0.001 4.001 22 C -0.082 4.082 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.084 4.084 27 N -0.301 5.301 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 -3.583 0.479 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.200 4.200 4 C 0.047 3.953 5 H 0.141 0.859 6 C 0.202 3.798 7 O -0.446 6.446 8 N -0.171 5.171 9 C -0.432 4.432 10 H 0.128 0.872 11 C -0.175 4.175 12 N -0.525 5.525 13 Si 0.761 3.239 14 H -0.189 1.189 15 H -0.203 1.203 16 H -0.204 1.204 17 N -0.023 5.023 18 N -0.025 5.025 19 N -0.159 5.159 20 C -0.088 4.088 21 C -0.004 4.004 22 C -0.102 4.102 23 C -0.142 4.142 24 C -0.128 4.128 25 C -0.141 4.141 26 C -0.104 4.104 27 N -0.151 5.151 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.228 0.772 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.451 -3.396 -0.581 14.856 hybrid contribution 0.409 -0.054 1.165 1.235 sum -14.042 -3.450 0.584 14.471 Atomic orbital electron populations 1.21883 0.94576 1.01546 1.02519 1.21296 0.95560 0.97332 0.96730 1.21763 1.02881 0.93288 1.02079 1.22328 0.94449 0.75423 1.03145 0.85877 1.19162 0.85981 0.88704 0.85990 1.90593 1.70929 1.53962 1.29089 1.41995 1.07363 1.60440 1.07261 1.19877 0.80218 1.47246 0.95879 0.87198 1.25396 1.01457 0.96206 0.94460 1.69615 1.37233 1.47245 0.98441 0.85719 0.81192 0.78013 0.79025 1.18855 1.20344 1.20422 1.50207 1.28633 1.13647 1.09862 1.79069 1.15313 0.92726 1.15406 1.76017 1.10612 1.18085 1.11182 1.23547 1.01312 0.90249 0.93699 1.17302 0.97378 0.92035 0.93667 1.21223 0.96789 0.92018 1.00146 1.21077 0.98234 0.99827 0.95030 1.21280 0.99308 0.96015 0.96243 1.21079 0.98992 0.94007 1.00067 1.21239 0.95759 1.00469 0.92913 1.74841 1.11954 1.12521 1.15795 0.92183 0.91472 0.93603 0.88009 0.90897 0.91594 0.92410 0.77174 0.91316 0.84729 0.85457 0.85832 0.85468 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.98 37.16 0.33 -1.61 16 2 C -0.09 -1.39 2.32 -90.62 -0.21 -1.60 16 3 C -0.14 -1.97 9.06 37.15 0.34 -1.63 16 4 C 0.15 2.76 2.61 -69.08 -0.18 2.58 16 5 H 0.12 1.99 8.11 -51.93 -0.42 1.57 16 6 C 0.42 9.63 5.88 -10.98 -0.06 9.56 16 7 O -0.56 -14.71 15.75 5.55 0.09 -14.62 16 8 N -0.54 -13.20 5.28 -10.96 -0.06 -13.26 16 9 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 10 H 0.11 3.07 7.17 -52.49 -0.38 2.70 16 11 C 0.03 0.75 5.50 -17.47 -0.10 0.65 16 12 N -0.89 -23.11 13.05 55.50 0.72 -22.39 16 13 Si 0.93 20.18 29.55 -169.99 -5.02 15.15 16 14 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 N -0.11 -2.15 2.74 -5.90 -0.02 -2.16 16 18 N -0.03 -0.68 12.91 60.35 0.78 0.10 16 19 N -0.29 -5.64 12.23 32.16 0.39 -5.25 16 20 C 0.19 3.43 7.94 -156.30 -1.24 2.19 16 21 C 0.00 -0.01 5.88 -104.89 -0.62 -0.63 16 22 C -0.08 -1.03 9.70 -39.26 -0.38 -1.41 16 23 C -0.12 -1.23 10.04 -39.63 -0.40 -1.63 16 24 C -0.11 -1.01 10.04 -39.52 -0.40 -1.40 16 25 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 26 C -0.08 -1.06 9.70 -39.26 -0.38 -1.44 16 27 N -0.30 -5.55 11.85 32.17 0.38 -5.16 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.68 7.47 -51.93 -0.39 0.29 16 31 H 0.10 1.81 7.69 -51.93 -0.40 1.41 16 32 H 0.07 1.20 7.23 -51.93 -0.38 0.83 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.39 9.42 7.88 -40.82 -0.32 9.10 16 36 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.13 1.67 7.89 -52.49 -0.41 1.25 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.65 7.88 -52.49 -0.41 1.23 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -30.93 358.40 -6.37 -37.30 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.20 Total: 11.14 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.84 Total: -6.25 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 2.20 Total: -48.13 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.93 -6.37 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.734 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds