Wall clock time and date at job start Tue Mar 31 2020 11:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47318 * 2 1 4 4 C 1.53009 * 109.46951 * 119.99779 * 2 1 3 5 5 H 1.08998 * 109.47090 * 294.92616 * 4 2 1 6 6 C 1.50703 * 109.46493 * 174.92397 * 4 2 1 7 7 O 1.21286 * 120.00559 * 322.52854 * 6 4 2 8 8 N 1.34780 * 119.99398 * 142.52991 * 6 4 2 9 9 C 1.37105 * 119.99593 * 184.97026 * 8 6 4 10 10 H 1.07994 * 120.00240 * 0.02562 * 9 8 6 11 11 C 1.38948 * 119.99335 * 179.97438 * 9 8 6 12 12 N 1.31401 * 120.00532 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99344 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47537 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47169 * 120.00096 * 13 11 9 16 16 H 1.48506 * 109.46784 * 239.99927 * 13 11 9 17 17 N 1.46500 * 109.47079 * 54.92646 * 4 2 1 18 18 N 1.28735 * 125.33878 * 59.97516 * 17 4 2 19 19 N 1.28987 * 108.94053 * 180.02562 * 18 17 4 20 20 C 1.34042 * 107.26877 * 359.97438 * 19 18 17 21 21 C 1.48468 * 126.67532 * 180.02562 * 20 19 18 22 22 C 1.39301 * 120.11416 * 0.02670 * 21 20 19 23 23 C 1.38032 * 119.88096 * 179.97438 * 22 21 20 24 24 C 1.38317 * 120.11286 * 359.97438 * 23 22 21 25 25 C 1.38312 * 120.23900 * 0.30123 * 24 23 22 26 26 C 1.38030 * 120.11840 * 359.44324 * 25 24 23 27 27 N 1.28867 * 125.34059 * 240.30963 * 17 4 2 28 28 H 1.09007 * 109.46790 * 299.99987 * 1 2 3 29 29 H 1.09000 * 109.47365 * 59.99875 * 1 2 3 30 30 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47038 * 239.99452 * 2 1 3 32 32 H 1.08998 * 109.47621 * 176.78086 * 3 2 1 33 33 H 1.09001 * 109.47138 * 296.78321 * 3 2 1 34 34 H 1.08998 * 109.47449 * 56.77750 * 3 2 1 35 35 H 0.96992 * 120.00015 * 4.97244 * 8 6 4 36 36 H 0.97001 * 120.00334 * 179.97438 * 12 11 9 37 37 H 1.07997 * 120.05702 * 0.02562 * 22 21 20 38 38 H 1.07992 * 119.94074 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.87757 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.94065 * 179.69710 * 25 24 23 41 41 H 1.07992 * 120.05993 * 180.29384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7527 -0.1576 2.1370 6 6 3.5418 -0.8310 1.1880 7 8 4.0918 -1.0405 0.1275 8 7 4.2736 -0.6963 2.3117 9 6 5.6429 -0.6942 2.2418 10 1 6.1350 -0.8000 1.2863 11 6 6.3974 -0.5549 3.4003 12 7 5.7986 -0.4256 4.5628 13 14 8.2630 -0.5513 3.3049 14 1 8.6868 -0.7115 1.8907 15 1 8.7833 0.7344 3.8354 16 1 8.8020 -1.6746 4.1130 17 7 1.4544 -2.0627 1.3120 18 7 1.5984 -2.9804 0.4207 19 7 0.9503 -4.0314 0.7935 20 6 0.3788 -3.7491 1.9727 21 6 -0.4676 -4.6566 2.7877 22 6 -0.7366 -5.9489 2.3427 23 6 -1.5237 -6.7887 3.1046 24 6 -2.0445 -6.3492 4.3082 25 6 -1.7852 -5.0652 4.7520 26 6 -0.9950 -4.2189 4.0005 27 7 0.7095 -2.5071 2.2650 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1285 1.4430 0.0577 33 1 1.7246 1.9394 -0.9174 34 1 1.6304 1.9727 0.8597 35 1 3.8317 -0.6010 3.1698 36 1 6.3254 -0.3287 5.3715 37 1 -0.3294 -6.2933 1.4036 38 1 -1.7332 -7.7906 2.7603 39 1 -2.6595 -7.0097 4.9015 40 1 -2.1983 -4.7254 5.6903 41 1 -0.7893 -3.2181 4.3502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060336288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:08 Heat of formation + Delta-G solvation = 87.967095 kcal Electronic energy + Delta-G solvation = -25849.109060 eV Core-core repulsion = 22152.067766 eV Total energy + Delta-G solvation = -3697.041294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -45.45412 -40.82864 -39.96776 -37.63551 -36.14759 -35.05082 -34.54696 -33.50487 -31.91853 -31.63387 -29.58341 -28.21662 -26.97707 -25.54159 -24.78175 -23.11336 -22.55860 -22.34977 -20.96358 -20.21040 -18.86493 -18.64277 -18.03134 -17.85592 -16.81578 -16.61316 -16.02790 -15.82299 -15.66190 -15.24822 -15.08361 -14.76166 -14.67592 -14.32739 -14.25260 -13.93057 -13.78065 -13.64238 -13.22091 -13.10426 -13.00526 -12.72425 -12.56663 -12.38995 -12.24499 -12.22206 -12.18235 -12.13665 -11.91494 -11.86998 -11.78312 -11.67881 -10.59733 -10.22857 -9.90118 -9.62220 -8.63510 -6.13430 -0.24472 0.17172 0.45847 0.46726 1.33113 1.37763 1.38155 1.51949 1.91463 2.16532 2.54096 2.73515 2.89714 3.05546 3.14169 3.36580 3.54446 3.90071 3.98230 4.05310 4.07141 4.11243 4.20701 4.36833 4.40564 4.55452 4.59389 4.65651 4.66601 4.67758 4.84040 4.93214 4.99987 5.02381 5.12966 5.20361 5.26857 5.29229 5.51583 5.52327 5.56619 5.76199 6.00508 6.32269 6.90725 7.19594 7.24538 7.76505 8.52923 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003919 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.198583 B = 7143.647275 C = 8573.242128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.137 4.137 4 C 0.155 3.845 5 H 0.147 0.853 6 C 0.424 3.576 7 O -0.598 6.598 8 N -0.545 5.545 9 C -0.338 4.338 10 H 0.087 0.913 11 C -0.003 4.003 12 N -0.907 5.907 13 Si 0.997 3.003 14 H -0.271 1.271 15 H -0.263 1.263 16 H -0.272 1.272 17 N -0.112 5.112 18 N -0.064 5.064 19 N -0.302 5.302 20 C 0.197 3.803 21 C -0.038 4.038 22 C -0.093 4.093 23 C -0.120 4.120 24 C -0.096 4.096 25 C -0.121 4.121 26 C -0.094 4.094 27 N -0.305 5.305 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.284 0.716 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 -4.024 2.165 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.195 4.195 4 C 0.052 3.948 5 H 0.165 0.835 6 C 0.209 3.791 7 O -0.482 6.482 8 N -0.181 5.181 9 C -0.467 4.467 10 H 0.105 0.895 11 C -0.205 4.205 12 N -0.546 5.546 13 Si 0.819 3.181 14 H -0.195 1.195 15 H -0.187 1.187 16 H -0.197 1.197 17 N -0.025 5.025 18 N -0.056 5.056 19 N -0.173 5.173 20 C -0.083 4.083 21 C -0.041 4.041 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.114 4.114 25 C -0.138 4.138 26 C -0.114 4.114 27 N -0.156 5.156 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.511 -3.835 1.116 16.987 hybrid contribution 0.894 -0.045 0.678 1.123 sum -15.617 -3.880 1.794 16.192 Atomic orbital electron populations 1.21818 0.92041 1.00842 1.04732 1.21335 0.97488 0.97665 0.94038 1.21758 1.00695 0.92415 1.04622 1.22362 0.91001 0.75615 1.05818 0.83493 1.19860 0.87957 0.86395 0.84907 1.90560 1.72582 1.54763 1.30342 1.42030 1.07025 1.61261 1.07762 1.19819 0.81474 1.49839 0.95603 0.89487 1.26160 1.05501 0.95114 0.93767 1.69664 1.38800 1.47253 0.98903 0.84823 0.75957 0.78691 0.78623 1.19489 1.18717 1.19731 1.50153 1.28892 1.13595 1.09879 1.79035 1.16493 0.93560 1.16542 1.75974 1.11154 1.17879 1.12273 1.24268 1.00502 0.90322 0.93165 1.17519 0.99147 0.92649 0.94782 1.21325 0.97708 0.91799 1.00528 1.21444 0.96830 1.00588 0.94893 1.21770 0.98002 0.95929 0.95701 1.21451 0.97765 0.94004 1.00611 1.21341 0.96487 1.00953 0.92610 1.74830 1.12337 1.12982 1.15412 0.90274 0.88921 0.95690 0.90673 0.94210 0.88941 0.90024 0.76942 0.90656 0.85514 0.82503 0.82013 0.82550 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.98 71.98 0.65 -2.77 16 2 C -0.08 -2.66 2.32 -10.79 -0.03 -2.69 16 3 C -0.14 -3.69 9.06 71.98 0.65 -3.04 16 4 C 0.16 5.82 2.61 44.25 0.12 5.94 16 5 H 0.15 4.72 8.11 -2.39 -0.02 4.71 16 6 C 0.42 20.37 5.88 87.66 0.52 20.89 16 7 O -0.60 -32.95 15.75 -3.05 -0.05 -32.99 16 8 N -0.55 -27.95 5.28 -306.98 -1.62 -29.58 16 9 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16 10 H 0.09 5.15 7.17 -2.91 -0.02 5.13 16 11 C 0.00 -0.17 5.50 84.93 0.47 0.30 16 12 N -0.91 -47.60 13.05 21.66 0.28 -47.31 16 13 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 17 N -0.11 -4.48 2.74 -172.57 -0.47 -4.95 16 18 N -0.06 -2.78 12.91 37.02 0.48 -2.31 16 19 N -0.30 -12.35 12.23 -52.18 -0.64 -12.99 16 20 C 0.20 7.24 7.94 137.38 1.09 8.33 16 21 C -0.04 -1.10 5.88 -20.04 -0.12 -1.22 16 22 C -0.09 -2.29 9.70 22.48 0.22 -2.07 16 23 C -0.12 -2.03 10.04 22.24 0.22 -1.81 16 24 C -0.10 -1.36 10.04 22.31 0.22 -1.13 16 25 C -0.12 -2.04 10.03 22.24 0.22 -1.82 16 26 C -0.09 -2.27 9.70 22.48 0.22 -2.05 16 27 N -0.31 -11.51 11.85 -52.13 -0.62 -12.12 16 28 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.02 0.72 7.47 -2.39 -0.02 0.70 16 31 H 0.07 2.77 7.69 -2.39 -0.02 2.75 16 32 H 0.04 1.33 7.23 -2.39 -0.02 1.31 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.40 19.57 7.88 -92.71 -0.73 18.84 16 36 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 37 H 0.13 3.20 7.89 -2.91 -0.02 3.18 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.13 3.12 7.88 -2.91 -0.02 3.09 16 Total: -1.00 -70.93 358.40 4.99 -65.94 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.33 Total: 33.76 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.26 Total: -1.14 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -2.59 Total: -109.26 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -70.93 4.99 -65.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.911 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds