Wall clock time and date at job start Tue Mar 31 2020 10:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47039 * 2 1 4 4 C 1.50702 * 109.46805 * 180.02562 * 3 2 1 5 5 N 1.31066 * 126.66590 * 269.68647 * 4 3 2 6 6 N 1.28841 * 107.99256 * 179.89729 * 5 4 3 7 7 N 1.28735 * 109.39790 * 0.37841 * 6 5 4 8 8 N 1.29015 * 108.80937 * 359.76879 * 7 6 5 9 9 C 1.46498 * 126.44330 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47247 * 270.02624 * 9 8 7 11 11 O 1.21284 * 119.99368 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00431 * 179.97438 * 10 9 8 13 13 C 1.39236 * 120.00199 * 175.70561 * 12 10 9 14 14 C 1.39479 * 119.83178 * 215.01941 * 13 12 10 15 15 C 1.36383 * 120.16744 * 179.71526 * 14 13 12 16 16 C 1.40868 * 119.82330 * 0.57837 * 15 14 13 17 17 C 1.41156 * 120.15891 * 179.67822 * 16 15 14 18 18 H 1.07999 * 119.99371 * 214.79407 * 17 16 15 19 19 C 1.39899 * 120.00203 * 34.79686 * 17 16 15 20 20 N 1.30869 * 120.00181 * 355.56101 * 19 17 16 21 21 Si 1.86802 * 119.99735 * 175.56159 * 19 17 16 22 22 H 1.48494 * 109.47430 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47240 * 119.99866 * 21 19 17 24 24 H 1.48501 * 109.47023 * 239.99685 * 21 19 17 25 25 C 1.40869 * 119.67660 * 359.68942 * 16 15 14 26 26 C 1.36373 * 119.82756 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47232 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46273 * 299.99565 * 1 2 3 29 29 H 1.08996 * 109.47357 * 59.99176 * 1 2 3 30 30 H 1.08996 * 109.47357 * 120.00824 * 2 1 3 31 31 H 1.09008 * 109.46361 * 240.00263 * 2 1 3 32 32 H 1.08996 * 109.47719 * 300.00602 * 3 2 1 33 33 H 1.08999 * 109.47233 * 60.01023 * 3 2 1 34 34 H 1.09006 * 109.46955 * 30.01654 * 9 8 7 35 35 H 1.08999 * 109.47637 * 150.01908 * 9 8 7 36 36 H 0.97000 * 119.99800 * 355.71385 * 12 10 9 37 37 H 1.07997 * 119.91814 * 359.97438 * 14 13 12 38 38 H 1.07993 * 120.08679 * 180.24898 * 15 14 13 39 39 H 0.96998 * 119.99899 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.08733 * 179.97438 * 25 16 15 41 41 H 1.07999 * 119.91714 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3302 1.4480 1.0503 6 7 5.5506 1.4435 0.6373 7 7 5.5663 1.4433 -0.6499 8 7 4.3502 1.4427 -1.0808 9 6 3.9236 1.4427 -2.4823 10 6 3.7770 2.8636 -2.9627 11 8 4.0060 3.7854 -2.2085 12 7 3.3916 3.1100 -4.2305 13 6 3.1697 4.4194 -4.6486 14 6 2.1578 4.6917 -5.5692 15 6 1.9307 5.9725 -5.9791 16 6 2.7291 7.0200 -5.4795 17 6 2.5046 8.3473 -5.9041 18 1 3.3373 9.0255 -6.0192 19 6 1.2037 8.7844 -6.1758 20 7 0.2050 7.9405 -6.1206 21 14 0.8923 10.5725 -6.6173 22 1 2.1781 11.3152 -6.6108 23 1 0.2824 10.6496 -7.9691 24 1 -0.0314 11.1744 -5.6224 25 6 3.7528 6.7364 -4.5543 26 6 3.9642 5.4514 -4.1493 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.6767 1.9564 -0.8899 33 1 1.6769 1.9562 0.8901 34 1 4.6694 0.9292 -3.0891 35 1 2.9665 0.9287 -2.5708 36 1 3.2687 2.3751 -4.8515 37 1 1.5499 3.8869 -5.9552 38 1 1.1442 6.1824 -6.6889 39 1 -0.6970 8.2436 -6.3086 40 1 4.3692 7.5343 -4.1673 41 1 4.7489 5.2322 -3.4404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068069047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:20 Heat of formation + Delta-G solvation = 74.779098 kcal Electronic energy + Delta-G solvation = -25288.401825 eV Core-core repulsion = 21590.788656 eV Total energy + Delta-G solvation = -3697.613169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.30207 -41.40629 -39.22456 -36.97786 -36.37711 -36.12025 -34.81803 -33.17563 -31.60587 -31.30633 -29.97951 -28.39462 -26.80379 -24.81433 -24.02705 -23.36822 -22.69724 -22.17032 -21.46724 -19.38189 -19.13976 -18.75694 -17.77216 -17.43226 -17.01049 -16.78622 -16.44004 -16.02439 -15.74121 -15.34263 -15.03441 -14.56288 -14.51587 -14.30677 -14.05237 -13.70005 -13.65310 -13.39543 -13.27152 -12.95918 -12.89773 -12.80481 -12.70743 -12.57855 -12.42959 -12.26728 -12.22503 -11.80917 -11.63912 -11.41983 -11.29697 -11.11857 -10.88331 -10.69648 -9.49606 -8.79217 -8.53967 -6.36603 0.06698 0.69948 0.84945 1.10395 1.10877 1.35723 1.39146 1.52456 1.60516 2.10940 2.22831 2.76942 2.90741 3.15097 3.46650 3.66124 3.69165 3.89334 3.97432 4.13584 4.16574 4.38594 4.46218 4.47858 4.58756 4.68739 4.71518 4.89916 4.92860 5.03346 5.08605 5.11531 5.22967 5.26288 5.27760 5.38611 5.47526 5.66353 5.85498 5.96508 6.09730 6.36614 6.52641 6.65811 6.93894 6.95574 7.20276 7.46202 8.38701 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.002845 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.964528 B = 9840.520326 C =10405.528174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.043 4.043 4 C 0.209 3.791 5 N -0.336 5.336 6 N -0.107 5.107 7 N -0.101 5.101 8 N -0.290 5.290 9 C 0.097 3.903 10 C 0.485 3.515 11 O -0.569 6.569 12 N -0.623 5.623 13 C 0.019 3.981 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.071 3.929 17 C -0.499 4.499 18 H 0.068 0.932 19 C 0.031 3.969 20 N -0.835 5.835 21 Si 0.985 3.015 22 H -0.264 1.264 23 H -0.260 1.260 24 H -0.269 1.269 25 C -0.227 4.227 26 C -0.096 4.096 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.181 0.819 35 H 0.194 0.806 36 H 0.428 0.572 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.286 0.714 40 H 0.087 0.913 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -18.436 2.254 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.083 4.083 4 C -0.069 4.069 5 N -0.185 5.185 6 N -0.100 5.100 7 N -0.087 5.087 8 N -0.091 5.091 9 C -0.027 4.027 10 C 0.271 3.729 11 O -0.447 6.447 12 N -0.270 5.270 13 C -0.075 4.075 14 C -0.127 4.127 15 C -0.180 4.180 16 C 0.069 3.931 17 C -0.529 4.529 18 H 0.086 0.914 19 C -0.181 4.181 20 N -0.463 5.463 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.185 1.185 24 H -0.194 1.194 25 C -0.247 4.247 26 C -0.116 4.116 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.198 0.802 35 H 0.211 0.789 36 H 0.268 0.732 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.652 -17.838 3.416 18.354 hybrid contribution -0.543 1.149 -0.728 1.464 sum -3.194 -16.689 2.687 17.203 Atomic orbital electron populations 1.21761 0.93381 1.02979 1.02740 1.21509 0.97466 0.92421 1.03568 1.20594 0.79665 1.01455 1.06599 1.26673 0.99629 0.98729 0.81835 1.74900 0.96933 1.20750 1.25901 1.78535 1.13920 1.16277 1.01289 1.78762 1.03693 1.18250 1.08025 1.48061 1.03823 1.46996 1.10225 1.22472 1.09298 0.95022 0.75882 1.21083 0.77888 0.91550 0.82363 1.90826 1.50382 1.47284 1.56247 1.42582 1.66092 1.07252 1.11045 1.17165 1.00793 0.84052 1.05451 1.20584 0.96086 0.97085 0.98923 1.21205 1.02459 0.91420 1.02867 1.18034 0.91275 0.94230 0.89599 1.19754 0.94044 0.97159 1.41964 0.91366 1.26655 0.95147 1.04161 0.92165 1.69792 1.01169 1.37435 1.37905 0.85106 0.78941 0.76521 0.78802 1.18821 1.18484 1.19416 1.20895 1.04762 0.95895 1.03141 1.20457 0.98628 0.92920 0.99558 0.91132 0.92496 0.91618 0.91634 0.89915 0.87794 0.87480 0.80206 0.78880 0.73249 0.84535 0.86102 0.90327 0.89456 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.11 -1.08 5.92 30.59 0.18 -0.90 16 3 C -0.04 -0.66 5.36 29.85 0.16 -0.50 16 4 C 0.21 5.04 7.39 138.13 1.02 6.06 16 5 N -0.34 -10.56 12.36 -50.45 -0.62 -11.18 16 6 N -0.11 -3.67 13.43 37.01 0.50 -3.18 16 7 N -0.10 -3.11 13.29 37.02 0.49 -2.62 16 8 N -0.29 -6.79 2.83 -341.96 -0.97 -7.76 16 9 C 0.10 1.29 6.54 85.64 0.56 1.85 16 10 C 0.49 12.42 7.73 87.66 0.68 13.09 16 11 O -0.57 -22.16 13.85 -3.04 -0.04 -22.20 16 12 N -0.62 -15.27 5.30 -303.11 -1.61 -16.88 16 13 C 0.02 0.72 6.31 38.57 0.24 0.96 16 14 C -0.11 -4.17 9.90 22.14 0.22 -3.95 16 15 C -0.16 -7.72 8.61 22.48 0.19 -7.53 16 16 C 0.07 3.78 5.55 -21.28 -0.12 3.66 16 17 C -0.50 -26.87 9.02 23.39 0.21 -26.66 16 18 H 0.07 3.62 7.85 -2.91 -0.02 3.60 16 19 C 0.03 1.55 5.42 85.24 0.46 2.02 16 20 N -0.84 -42.11 10.60 21.82 0.23 -41.88 16 21 Si 0.98 38.23 29.56 68.60 2.03 40.26 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 25 C -0.23 -11.58 9.74 22.48 0.22 -11.36 16 26 C -0.10 -4.39 8.61 22.13 0.19 -4.20 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.10 1.40 7.81 -2.39 -0.02 1.38 16 33 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.18 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.19 0.45 7.75 -2.39 -0.02 0.43 16 36 H 0.43 5.74 8.82 -92.71 -0.82 4.92 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.12 6.12 6.13 -2.91 -0.02 6.10 16 39 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 40 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.10 4.66 6.22 -2.91 -0.02 4.64 16 Total: -1.00 -79.17 354.54 5.19 -73.97 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.26 Total: 19.41 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.93 Total: -27.94 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.98 Total: -83.51 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.04 Total: -22.20 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -79.17 5.19 -73.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068069047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.750 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds