Wall clock time and date at job start Tue Mar 31 2020 10:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39734 * 125.78235 * 2 1 4 4 C 1.36153 * 107.85694 * 180.13489 * 3 2 1 5 5 N 1.39357 * 126.26021 * 179.88539 * 4 3 2 6 6 C 1.34777 * 120.00004 * 359.40748 * 5 4 3 7 7 O 1.21763 * 120.00058 * 0.28105 * 6 5 4 8 8 C 1.41780 * 120.00043 * 180.27703 * 6 5 4 9 9 C 1.35068 * 120.00002 * 180.02562 * 8 6 5 10 10 C 1.46960 * 119.99945 * 180.02562 * 9 8 6 11 11 C 1.41434 * 126.44140 * 0.02562 * 10 9 8 12 12 N 1.30445 * 108.03797 * 179.97438 * 11 10 9 13 13 N 1.39917 * 108.96962 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.74595 * 179.97438 * 13 12 11 15 15 C 1.34406 * 108.51128 * 359.72786 * 13 12 11 16 16 N 1.35803 * 107.47592 * 359.61878 * 4 3 2 17 17 C 1.46494 * 126.09567 * 180.21980 * 16 4 3 18 18 C 1.50703 * 109.47107 * 90.00157 * 17 16 4 19 19 H 1.07995 * 119.99827 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00053 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99874 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00054 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47450 * 89.99543 * 22 20 18 24 24 H 1.48498 * 109.47029 * 209.99925 * 22 20 18 25 25 H 1.48509 * 109.46930 * 329.99898 * 22 20 18 26 26 N 1.30835 * 125.77605 * 179.70573 * 2 1 3 27 27 H 1.09002 * 109.47070 * 270.27252 * 1 2 3 28 28 H 1.09000 * 109.46793 * 30.26892 * 1 2 3 29 29 H 1.08993 * 109.47145 * 150.27599 * 1 2 3 30 30 H 1.08000 * 126.06653 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00208 * 179.69277 * 5 4 3 32 32 H 1.07991 * 119.99722 * 0.02562 * 8 6 5 33 33 H 1.08002 * 119.99757 * 0.02562 * 9 8 6 34 34 H 1.08001 * 125.97872 * 0.02562 * 11 10 9 35 35 H 1.09004 * 109.46907 * 89.97625 * 14 13 12 36 36 H 1.08996 * 109.47366 * 209.97618 * 14 13 12 37 37 H 1.09004 * 109.47164 * 329.97578 * 14 13 12 38 38 H 1.08001 * 126.32201 * 180.30470 * 15 13 12 39 39 H 1.09001 * 109.47436 * 209.99907 * 17 16 4 40 40 H 1.09001 * 109.47495 * 330.00160 * 17 16 4 41 41 H 0.97008 * 119.99780 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7145 -0.0031 5 7 4.7496 1.5300 -0.0063 6 6 4.6130 2.8708 -0.0188 7 8 3.5023 3.3696 -0.0220 8 6 5.7627 3.7004 -0.0280 9 6 5.6259 5.0441 -0.0400 10 6 6.8176 5.9039 -0.0502 11 6 8.1647 5.4729 -0.0494 12 7 8.9274 6.5310 -0.0609 13 7 8.1199 7.6737 -0.0689 14 6 8.5970 9.0587 -0.0820 15 6 6.8328 7.2866 -0.0679 16 7 3.6089 -0.6434 0.0037 17 6 4.7858 -1.5157 0.0079 18 6 5.1895 -1.8078 1.4302 19 1 4.6255 -1.3862 2.2490 20 6 6.2783 -2.6141 1.6860 21 7 6.6309 -2.8686 2.9272 22 14 7.2534 -3.3440 0.2698 23 1 8.3457 -2.4129 -0.1109 24 1 7.8349 -4.6449 0.6877 25 1 6.3545 -3.5544 -0.8935 26 7 2.2719 -1.0615 0.0055 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3633 -0.8924 -0.5095 30 1 1.9876 2.1598 -0.0004 31 1 5.6344 1.1326 -0.0039 32 1 6.7478 3.2579 -0.0256 33 1 4.6407 5.4865 -0.0420 34 1 8.5026 4.4471 -0.0416 35 1 8.7133 9.3932 -1.1129 36 1 7.8750 9.6966 0.4277 37 1 9.5579 9.1169 0.4295 38 1 5.9696 7.9356 -0.0775 39 1 4.5478 -2.4496 -0.5012 40 1 5.6076 -1.0197 -0.5085 41 1 7.3967 -3.4362 3.1072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068219446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:56 Heat of formation + Delta-G solvation = 143.738702 kcal Electronic energy + Delta-G solvation = -24607.438397 eV Core-core repulsion = 20912.815541 eV Total energy + Delta-G solvation = -3694.622856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48564 -40.80562 -39.21633 -34.85171 -34.52289 -33.67555 -32.86924 -32.09528 -30.22925 -29.41764 -28.32711 -26.98107 -26.24044 -24.14396 -22.41784 -21.68408 -21.18410 -19.98439 -19.57202 -18.76444 -17.30307 -17.15337 -16.86663 -16.31004 -15.89350 -15.10741 -15.06967 -14.78052 -14.43305 -14.13432 -13.86346 -13.77646 -13.44286 -13.25297 -13.06970 -12.74741 -12.65238 -12.55770 -12.28737 -12.18955 -11.83099 -11.76778 -11.10428 -10.92979 -10.79614 -10.59916 -10.36417 -10.16413 -9.91123 -9.89286 -9.71380 -9.46663 -8.82211 -8.24400 -7.85728 -7.36906 -6.29300 -4.33285 0.72734 1.65094 2.06004 2.49065 2.86660 2.98049 3.10650 3.20885 3.21972 3.46130 3.81914 3.83439 4.07871 4.18171 4.37044 4.61887 4.66153 4.86334 4.92136 4.97194 4.99931 5.19329 5.28271 5.36292 5.49852 5.65660 6.05186 6.06627 6.11500 6.21010 6.22264 6.29146 6.36160 6.44523 6.46284 6.52695 6.74744 6.82602 7.25082 7.28379 7.53330 7.67282 7.86875 8.25563 8.43519 8.64605 8.77824 9.25611 10.83026 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.003253 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.627762 B = 8605.210512 C =10789.622047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.053 3.947 3 C -0.291 4.291 4 C 0.306 3.694 5 N -0.638 5.638 6 C 0.561 3.439 7 O -0.530 6.530 8 C -0.235 4.235 9 C 0.043 3.957 10 C -0.233 4.233 11 C 0.078 3.922 12 N -0.301 5.301 13 N -0.368 5.368 14 C 0.098 3.902 15 C 0.087 3.913 16 N -0.348 5.348 17 C 0.231 3.769 18 C -0.544 4.544 19 H 0.081 0.919 20 C 0.080 3.920 21 N -0.884 5.884 22 Si 0.871 3.129 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.263 1.263 26 N -0.284 5.284 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.164 0.836 31 H 0.415 0.585 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.192 0.808 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.185 0.815 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 22.517 -8.061 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.323 4.323 4 C 0.084 3.916 5 N -0.284 5.284 6 C 0.352 3.648 7 O -0.408 6.408 8 C -0.257 4.257 9 C 0.022 3.978 10 C -0.245 4.245 11 C -0.109 4.109 12 N -0.120 5.120 13 N -0.147 5.147 14 C -0.044 4.044 15 C -0.062 4.062 16 N -0.133 5.133 17 C 0.111 3.889 18 C -0.582 4.582 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.521 5.521 22 Si 0.697 3.303 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.109 5.109 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.181 0.819 31 H 0.251 0.749 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.208 0.792 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.201 0.799 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.630 22.043 -7.940 23.576 hybrid contribution 0.574 -0.256 -0.429 0.761 sum 3.204 21.787 -8.369 23.558 Atomic orbital electron populations 1.20025 0.87522 1.02292 1.02248 1.22043 0.96542 0.91047 1.01631 1.21289 0.89008 1.00470 1.21510 1.18048 0.88304 0.82960 1.02251 1.42725 1.07987 1.05833 1.71823 1.16971 0.90083 0.80947 0.76752 1.90738 1.26938 1.73882 1.49220 1.21525 0.98263 0.94305 1.11563 1.21563 0.96113 0.92143 0.88021 1.19463 0.93802 0.91933 1.19299 1.24249 0.90956 0.98590 0.97131 1.77192 1.18671 0.91295 1.24882 1.48394 1.04177 1.06937 1.55170 1.21959 1.02388 0.76254 1.03753 1.23179 0.88440 0.95789 0.98836 1.49021 1.06054 1.01997 1.56251 1.19911 0.79362 0.89988 0.99597 1.21210 1.14213 1.32419 0.90376 0.90069 1.24824 0.96628 0.95265 0.95769 1.69878 1.26876 1.36762 1.18549 0.86921 0.80786 0.79713 0.82851 1.19628 1.20417 1.18753 1.77320 0.85882 1.21825 1.25826 0.91218 0.91113 0.91583 0.81884 0.74863 0.85434 0.84558 0.79168 0.90357 0.89118 0.88947 0.79850 0.92826 0.94740 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.08 7.20 -82.46 -0.59 0.48 16 3 C -0.29 -6.07 9.58 -39.77 -0.38 -6.45 16 4 C 0.31 6.57 7.68 -152.77 -1.17 5.40 16 5 N -0.64 -11.42 5.40 -13.92 -0.08 -11.49 16 6 C 0.56 9.09 7.53 -14.91 -0.11 8.97 16 7 O -0.53 -9.74 13.23 5.13 0.07 -9.68 16 8 C -0.23 -2.85 9.33 -39.36 -0.37 -3.22 16 9 C 0.04 0.45 9.64 -37.18 -0.36 0.10 16 10 C -0.23 -2.24 6.08 -105.13 -0.64 -2.88 16 11 C 0.08 0.79 11.39 -16.92 -0.19 0.60 16 12 N -0.30 -3.28 12.49 30.89 0.39 -2.89 16 13 N -0.37 -2.98 3.98 -67.49 -0.27 -3.25 16 14 C 0.10 0.35 11.44 59.85 0.68 1.04 16 15 C 0.09 0.65 11.52 -16.41 -0.19 0.46 16 16 N -0.35 -8.19 3.62 -61.46 -0.22 -8.41 16 17 C 0.23 5.52 5.09 -5.19 -0.03 5.50 16 18 C -0.54 -15.12 9.94 -34.44 -0.34 -15.46 16 19 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.88 -26.04 13.96 55.43 0.77 -25.27 16 22 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 26 N -0.28 -6.67 12.56 33.64 0.42 -6.25 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.16 3.29 5.82 -52.49 -0.31 2.99 16 31 H 0.42 6.71 7.95 -40.82 -0.32 6.38 16 32 H 0.13 1.27 6.93 -52.49 -0.36 0.91 16 33 H 0.14 1.39 7.45 -52.49 -0.39 1.00 16 34 H 0.19 1.55 7.31 -52.49 -0.38 1.16 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 40 H 0.03 0.74 6.95 -51.93 -0.36 0.38 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -36.74 358.69 -6.64 -43.38 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.05 Total: 7.26 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.41 Total: -3.94 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 1.02 Total: -57.56 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.74 -6.64 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.121 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds