Wall clock time and date at job start Tue Mar 31 2020 10:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39734 * 125.78235 * 2 1 4 4 C 1.36153 * 107.85694 * 180.13489 * 3 2 1 5 5 N 1.39357 * 126.26021 * 179.88539 * 4 3 2 6 6 C 1.34777 * 120.00004 * 359.40748 * 5 4 3 7 7 O 1.21763 * 120.00058 * 0.28105 * 6 5 4 8 8 C 1.41780 * 120.00043 * 180.27703 * 6 5 4 9 9 C 1.35068 * 120.00002 * 180.02562 * 8 6 5 10 10 C 1.46960 * 119.99945 * 180.02562 * 9 8 6 11 11 C 1.41434 * 126.44140 * 0.02562 * 10 9 8 12 12 N 1.30445 * 108.03797 * 179.97438 * 11 10 9 13 13 N 1.39917 * 108.96962 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.74595 * 179.97438 * 13 12 11 15 15 C 1.34406 * 108.51128 * 359.72786 * 13 12 11 16 16 N 1.35803 * 107.47592 * 359.61878 * 4 3 2 17 17 C 1.46494 * 126.09567 * 180.21980 * 16 4 3 18 18 C 1.50703 * 109.47107 * 90.00157 * 17 16 4 19 19 H 1.07995 * 119.99827 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00053 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99874 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00054 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47450 * 89.99543 * 22 20 18 24 24 H 1.48498 * 109.47029 * 209.99925 * 22 20 18 25 25 H 1.48509 * 109.46930 * 329.99898 * 22 20 18 26 26 N 1.30835 * 125.77605 * 179.70573 * 2 1 3 27 27 H 1.09002 * 109.47070 * 270.27252 * 1 2 3 28 28 H 1.09000 * 109.46793 * 30.26892 * 1 2 3 29 29 H 1.08993 * 109.47145 * 150.27599 * 1 2 3 30 30 H 1.08000 * 126.06653 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00208 * 179.69277 * 5 4 3 32 32 H 1.07991 * 119.99722 * 0.02562 * 8 6 5 33 33 H 1.08002 * 119.99757 * 0.02562 * 9 8 6 34 34 H 1.08001 * 125.97872 * 0.02562 * 11 10 9 35 35 H 1.09004 * 109.46907 * 89.97625 * 14 13 12 36 36 H 1.08996 * 109.47366 * 209.97618 * 14 13 12 37 37 H 1.09004 * 109.47164 * 329.97578 * 14 13 12 38 38 H 1.08001 * 126.32201 * 180.30470 * 15 13 12 39 39 H 1.09001 * 109.47436 * 209.99907 * 17 16 4 40 40 H 1.09001 * 109.47495 * 330.00160 * 17 16 4 41 41 H 0.97008 * 119.99780 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7145 -0.0031 5 7 4.7496 1.5300 -0.0063 6 6 4.6130 2.8708 -0.0188 7 8 3.5023 3.3696 -0.0220 8 6 5.7627 3.7004 -0.0280 9 6 5.6259 5.0441 -0.0400 10 6 6.8176 5.9039 -0.0502 11 6 8.1647 5.4729 -0.0494 12 7 8.9274 6.5310 -0.0609 13 7 8.1199 7.6737 -0.0689 14 6 8.5970 9.0587 -0.0820 15 6 6.8328 7.2866 -0.0679 16 7 3.6089 -0.6434 0.0037 17 6 4.7858 -1.5157 0.0079 18 6 5.1895 -1.8078 1.4302 19 1 4.6255 -1.3862 2.2490 20 6 6.2783 -2.6141 1.6860 21 7 6.6309 -2.8686 2.9272 22 14 7.2534 -3.3440 0.2698 23 1 8.3457 -2.4129 -0.1109 24 1 7.8349 -4.6449 0.6877 25 1 6.3545 -3.5544 -0.8935 26 7 2.2719 -1.0615 0.0055 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3633 -0.8924 -0.5095 30 1 1.9876 2.1598 -0.0004 31 1 5.6344 1.1326 -0.0039 32 1 6.7478 3.2579 -0.0256 33 1 4.6407 5.4865 -0.0420 34 1 8.5026 4.4471 -0.0416 35 1 8.7133 9.3932 -1.1129 36 1 7.8750 9.6966 0.4277 37 1 9.5579 9.1169 0.4295 38 1 5.9696 7.9356 -0.0775 39 1 4.5478 -2.4496 -0.5012 40 1 5.6076 -1.0197 -0.5085 41 1 7.3967 -3.4362 3.1072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068219446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:55 Heat of formation + Delta-G solvation = 118.169404 kcal Electronic energy + Delta-G solvation = -24608.547165 eV Core-core repulsion = 20912.815541 eV Total energy + Delta-G solvation = -3695.731624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38576 -42.11964 -40.58654 -36.24309 -35.60513 -35.33211 -33.94922 -33.56984 -31.28611 -30.83099 -29.70725 -27.98309 -27.62831 -25.19912 -24.22683 -22.64270 -22.02523 -21.29741 -20.94864 -19.90978 -19.25145 -18.36326 -18.17012 -17.39477 -16.69462 -16.52095 -16.41375 -16.06860 -15.52474 -15.40460 -15.35591 -14.87408 -14.62293 -14.39382 -14.12849 -13.98256 -13.77224 -13.66213 -13.47940 -13.24175 -13.11648 -13.01182 -12.89221 -12.53457 -12.12131 -11.85605 -11.73170 -11.63567 -11.45718 -11.36452 -10.91331 -10.89358 -10.52526 -9.57833 -9.15210 -8.83526 -8.41919 -6.54255 -0.15584 0.89855 1.09483 1.33457 1.34724 1.44392 1.49487 1.58526 1.80335 2.05244 2.25461 2.33072 2.62706 2.89542 3.47453 3.80900 3.87207 3.92876 4.16534 4.22275 4.28647 4.42021 4.44951 4.47416 4.61444 4.66581 4.70339 4.72440 4.74035 4.90890 4.96109 4.98169 5.14211 5.20899 5.23421 5.38764 5.48579 5.54672 5.90094 5.99328 6.02665 6.27372 6.41325 6.50466 6.61368 6.99888 7.09168 7.12593 8.74716 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.003253 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.627762 B = 8605.210512 C =10789.622047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 C -0.306 4.306 4 C 0.302 3.698 5 N -0.640 5.640 6 C 0.562 3.438 7 O -0.557 6.557 8 C -0.265 4.265 9 C 0.080 3.920 10 C -0.265 4.265 11 C 0.070 3.930 12 N -0.339 5.339 13 N -0.368 5.368 14 C 0.087 3.913 15 C 0.111 3.889 16 N -0.371 5.371 17 C 0.240 3.760 18 C -0.553 4.553 19 H 0.021 0.979 20 C 0.024 3.976 21 N -0.935 5.935 22 Si 0.950 3.050 23 H -0.245 1.245 24 H -0.279 1.279 25 H -0.247 1.247 26 N -0.329 5.329 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.170 0.830 31 H 0.421 0.579 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.199 0.801 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.226 0.774 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 24.864 -9.964 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.337 4.337 4 C 0.080 3.920 5 N -0.287 5.287 6 C 0.357 3.643 7 O -0.438 6.438 8 C -0.287 4.287 9 C 0.059 3.941 10 C -0.277 4.277 11 C -0.116 4.116 12 N -0.159 5.159 13 N -0.146 5.146 14 C -0.052 4.052 15 C -0.040 4.040 16 N -0.157 5.157 17 C 0.120 3.880 18 C -0.591 4.591 19 H 0.039 0.961 20 C -0.176 4.176 21 N -0.573 5.573 22 Si 0.771 3.229 23 H -0.169 1.169 24 H -0.204 1.204 25 H -0.171 1.171 26 N -0.154 5.154 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.188 0.812 31 H 0.258 0.742 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.216 0.784 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.243 0.757 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.197 24.434 -9.848 26.538 hybrid contribution 0.372 -0.678 0.261 0.817 sum 3.570 23.756 -9.586 25.865 Atomic orbital electron populations 1.20230 0.83846 1.04198 1.03608 1.22904 0.98797 0.90079 0.98881 1.21515 0.89087 1.00886 1.22250 1.18470 0.89832 0.82653 1.01037 1.42921 1.07321 1.06218 1.72230 1.17590 0.90922 0.80358 0.75458 1.90699 1.28241 1.73986 1.50831 1.21390 0.97430 0.94435 1.15470 1.21670 0.96775 0.91603 0.84067 1.19505 0.93103 0.92987 1.22058 1.24518 0.91378 0.99127 0.96584 1.77147 1.20052 0.92370 1.26336 1.48813 1.04316 1.07739 1.53707 1.22352 1.03338 0.74399 1.05158 1.23845 0.89332 0.95496 0.95336 1.48953 1.06022 1.02684 1.58059 1.19718 0.80633 0.90631 0.97044 1.21229 1.14113 1.32785 0.90976 0.96057 1.25842 0.97558 0.95192 0.99037 1.70040 1.27902 1.37848 1.21518 0.85686 0.79490 0.78880 0.78834 1.16861 1.20404 1.17083 1.77255 0.86297 1.23583 1.28265 0.89969 0.88386 0.90485 0.81240 0.74190 0.83694 0.84087 0.78396 0.88982 0.85957 0.89119 0.75716 0.93069 0.91684 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -0.99 16 2 C 0.06 2.42 7.20 43.07 0.31 2.73 16 3 C -0.31 -12.90 9.58 22.15 0.21 -12.68 16 4 C 0.30 13.25 7.68 131.20 1.01 14.26 16 5 N -0.64 -23.28 5.40 -316.14 -1.71 -24.98 16 6 C 0.56 18.26 7.53 85.12 0.64 18.90 16 7 O -0.56 -20.52 13.23 -4.55 -0.06 -20.58 16 8 C -0.27 -6.29 9.33 22.42 0.21 -6.09 16 9 C 0.08 1.57 9.64 23.83 0.23 1.80 16 10 C -0.27 -4.54 6.08 -20.19 -0.12 -4.67 16 11 C 0.07 1.35 11.39 85.69 0.98 2.32 16 12 N -0.34 -6.93 12.49 -56.18 -0.70 -7.63 16 13 N -0.37 -4.96 3.98 -367.45 -1.46 -6.42 16 14 C 0.09 0.36 11.44 127.77 1.46 1.82 16 15 C 0.11 1.28 11.52 84.31 0.97 2.25 16 16 N -0.37 -17.94 3.62 -348.35 -1.26 -19.20 16 17 C 0.24 11.60 5.09 85.64 0.44 12.04 16 18 C -0.55 -31.96 9.94 25.60 0.25 -31.70 16 19 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 20 C 0.02 1.34 5.47 84.66 0.46 1.80 16 21 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 22 Si 0.95 40.48 27.47 68.60 1.88 42.36 16 23 H -0.24 -9.41 7.11 99.48 0.71 -8.70 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.25 -9.86 6.54 99.48 0.65 -9.21 16 26 N -0.33 -15.85 12.56 -47.47 -0.60 -16.44 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.17 6.87 5.82 -2.91 -0.02 6.85 16 31 H 0.42 13.78 7.95 -92.71 -0.74 13.04 16 32 H 0.15 2.82 6.93 -2.91 -0.02 2.80 16 33 H 0.14 2.61 7.45 -2.91 -0.02 2.59 16 34 H 0.20 3.12 7.31 -2.91 -0.02 3.10 16 35 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.23 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.05 2.48 7.20 -2.39 -0.02 2.47 16 40 H 0.07 2.72 6.95 -2.39 -0.02 2.71 16 41 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -84.42 358.69 4.46 -79.95 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.28 Total: 27.71 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 7.79 Total: 1.78 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.43 Total: -131.23 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.06 Total: -20.58 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.88 Total: 42.36 kcal Total: -84.42 4.46 -79.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.122 kcal (2) G-P(sol) polarization free energy of solvation -84.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds