Wall clock time and date at job start Tue Mar 31 2020 11:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47390 * 325.75085 * 3 2 1 5 5 C 1.46905 * 110.99924 * 67.77694 * 4 3 2 6 6 C 1.52994 * 109.47245 * 69.78105 * 5 4 3 7 7 C 1.53000 * 109.47053 * 174.45620 * 6 5 4 8 8 S 1.81002 * 109.47208 * 180.02562 * 7 6 5 9 9 C 1.76193 * 100.00274 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99881 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00164 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99946 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99763 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47156 * 59.99954 * 13 11 9 15 15 H 1.48500 * 109.46837 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46867 * 299.99711 * 13 11 9 17 17 C 1.46901 * 111.00000 * 303.82189 * 4 3 2 18 18 H 1.09002 * 110.34169 * 61.14355 * 17 4 3 19 19 C 1.54345 * 110.30369 * 299.01591 * 17 4 3 20 20 C 1.54346 * 102.39100 * 267.42706 * 19 17 4 21 21 C 1.51368 * 105.16713 * 333.64682 * 20 19 17 22 22 C 1.38498 * 130.39037 * 197.17527 * 21 20 19 23 23 C 1.38102 * 120.21582 * 179.97438 * 22 21 20 24 24 C 1.38256 * 119.93657 * 0.03164 * 23 22 21 25 25 C 1.38106 * 119.93250 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.76281 * 17.19811 * 21 20 19 27 27 H 4.40882 * 5.52208 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47091 * 205.74987 * 3 2 1 29 29 H 1.09007 * 109.46949 * 85.75400 * 3 2 1 30 30 H 1.08995 * 109.47101 * 189.78486 * 5 4 3 31 31 H 1.09002 * 109.47085 * 309.78263 * 5 4 3 32 32 H 1.08997 * 109.47313 * 294.45856 * 6 5 4 33 33 H 1.09000 * 109.47327 * 54.45627 * 6 5 4 34 34 H 1.08997 * 109.47254 * 300.00272 * 7 6 5 35 35 H 1.08996 * 109.47329 * 60.00233 * 7 6 5 36 36 H 0.96996 * 119.99685 * 180.02562 * 12 11 9 37 37 H 1.08999 * 110.82029 * 149.19428 * 19 17 4 38 38 H 1.09006 * 110.99008 * 25.72520 * 19 17 4 39 39 H 1.09000 * 110.30277 * 214.73196 * 20 19 17 40 40 H 1.08991 * 110.39184 * 92.61517 * 20 19 17 41 41 H 1.07999 * 119.89053 * 0.02562 * 22 21 20 42 42 H 1.08000 * 120.03341 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.03260 * 180.25468 * 24 23 22 44 44 H 1.07996 * 119.88989 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.1439 0.7794 5 6 2.8232 -2.4118 0.1066 6 6 3.6769 -2.5433 -1.1562 7 6 3.4532 -3.9216 -1.7817 8 16 4.4638 -4.0776 -3.2752 9 6 4.0237 -5.7093 -3.7735 10 1 3.3170 -6.2801 -3.1894 11 6 4.5851 -6.2611 -4.9167 12 7 5.4467 -5.5655 -5.6283 13 14 4.1179 -7.9908 -5.4452 14 1 2.6558 -8.0534 -5.6975 15 1 4.8506 -8.3435 -6.6878 16 1 4.4764 -8.9507 -4.3703 17 6 2.5920 -1.1236 2.1438 18 1 1.5043 -1.1897 2.1189 19 6 3.0339 0.1604 2.8776 20 6 4.3249 -0.2938 3.5913 21 6 4.1646 -1.7860 3.7882 22 6 4.8371 -2.6577 4.6284 23 6 4.5153 -4.0007 4.6383 24 6 3.5192 -4.4776 3.8065 25 6 2.8475 -3.6099 2.9679 26 6 3.1690 -2.2629 2.9564 27 1 -1.0498 -0.0002 0.0004 28 1 3.0089 0.9264 0.4465 29 1 3.0093 -0.0753 -1.0249 30 1 3.0382 -3.2425 0.7787 31 1 1.7677 -2.4281 -0.1650 32 1 3.3920 -1.7700 -1.8695 33 1 4.7294 -2.4285 -0.8969 34 1 3.7381 -4.6949 -1.0683 35 1 2.4008 -4.0365 -2.0410 36 1 5.8387 -5.9510 -6.4274 37 1 2.2804 0.4722 3.6007 38 1 3.2442 0.9620 2.1695 39 1 4.4203 0.2067 4.5550 40 1 5.1958 -0.0857 2.9699 41 1 5.6151 -2.2859 5.2787 42 1 5.0413 -4.6778 5.2950 43 1 3.2634 -5.5268 3.8159 44 1 2.0693 -3.9831 2.3187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072515016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:51 Heat of formation + Delta-G solvation = 77.722649 kcal Electronic energy + Delta-G solvation = -23213.818601 eV Core-core repulsion = 20030.333538 eV Total energy + Delta-G solvation = -3183.485064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63907 -37.97826 -35.24276 -33.43734 -32.40537 -32.00808 -31.00403 -29.11422 -27.43514 -26.72437 -25.52364 -23.77137 -22.69498 -21.29900 -20.52856 -20.39879 -17.97414 -17.44218 -16.68999 -16.50024 -15.67083 -15.49096 -14.87388 -14.78092 -14.67838 -14.32313 -13.98632 -13.84324 -13.34690 -13.25486 -12.99712 -12.78617 -12.67145 -12.13482 -11.82948 -11.66582 -11.49511 -11.39192 -11.15089 -11.13577 -11.02736 -10.84506 -10.78260 -10.59806 -10.48874 -10.31105 -10.04020 -9.50694 -9.02053 -8.92954 -8.71223 -8.41606 -8.25969 -6.48419 -6.19483 -3.89154 1.25961 1.32632 2.65658 2.74805 3.23630 3.25118 3.29557 3.52938 3.66768 4.03069 4.23709 4.25971 4.35271 4.38179 4.85850 4.90133 4.96669 4.99523 5.12176 5.16407 5.22372 5.35089 5.39202 5.41949 5.45868 5.53818 5.57294 5.65437 5.69727 5.79985 5.81210 5.84167 5.88521 5.96355 5.98137 6.08453 6.16676 6.36344 6.38759 6.44589 6.58956 6.63069 6.78178 6.90637 6.99308 7.03042 7.50639 7.63325 8.39632 9.26647 10.88708 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.003243 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.416503 B = 8631.560074 C = 9862.531895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.211 4.211 3 C 0.150 3.850 4 N -0.510 5.510 5 C 0.048 3.952 6 C -0.091 4.091 7 C -0.111 4.111 8 S -0.131 6.131 9 C -0.516 4.516 10 H 0.071 0.929 11 C 0.071 3.929 12 N -0.870 5.870 13 Si 0.917 3.083 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.121 3.879 18 H 0.053 0.947 19 C -0.115 4.115 20 C -0.075 4.075 21 C -0.081 4.081 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.099 4.099 26 C -0.088 4.088 27 H 0.213 0.787 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.267 0.733 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 11.227 20.763 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.213 4.213 3 C 0.023 3.977 4 N -0.232 5.232 5 C -0.081 4.081 6 C -0.129 4.129 7 C -0.260 4.260 8 S 0.098 5.902 9 C -0.665 4.665 10 H 0.089 0.911 11 C -0.137 4.137 12 N -0.506 5.506 13 Si 0.743 3.257 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.013 3.987 18 H 0.071 0.929 19 C -0.153 4.153 20 C -0.112 4.112 21 C -0.081 4.081 22 C -0.131 4.131 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.118 4.118 26 C -0.088 4.088 27 H 0.230 0.770 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.461 12.001 20.143 23.868 hybrid contribution -2.278 -2.258 0.031 3.208 sum -6.739 9.742 20.174 23.395 Atomic orbital electron populations 1.24989 0.96044 1.00210 1.01152 1.24370 0.95887 1.00758 1.00243 1.19674 0.82178 0.95367 1.00507 1.62467 1.57173 1.02810 1.00732 1.22418 0.97992 0.91128 0.96530 1.21245 1.00696 0.96390 0.94605 1.23210 1.02726 0.98289 1.01793 1.84598 1.57770 1.22533 1.25344 1.22654 1.30728 0.99641 1.13453 0.91095 1.24999 0.94669 0.98581 0.95469 1.70013 1.27518 1.37095 1.15941 0.86246 0.78680 0.82730 0.78001 1.19975 1.20813 1.19937 1.21070 0.96732 0.92808 0.88081 0.92934 1.22392 0.97178 0.96674 0.99019 1.20987 0.98854 0.90864 1.00495 1.20557 0.95595 0.96036 0.95916 1.20598 1.00032 0.93065 0.99390 1.21035 0.97787 0.95227 0.99314 1.21031 0.96813 0.99537 0.96654 1.20706 1.00125 0.92222 0.98733 1.20331 0.97703 0.93648 0.97129 0.76994 0.88218 0.87513 0.89893 0.94555 0.91882 0.90652 0.92217 0.92491 0.92291 0.90895 0.89736 0.91101 0.89547 0.86379 0.86006 0.85904 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.24 19.25 29.55 0.57 -1.67 16 2 C -0.21 -2.50 10.71 -37.13 -0.40 -2.89 16 3 C 0.15 1.67 5.45 -6.62 -0.04 1.63 16 4 N -0.51 -6.32 4.56 -230.28 -1.05 -7.37 16 5 C 0.05 0.69 4.69 -3.82 -0.02 0.67 16 6 C -0.09 -1.54 5.11 -26.73 -0.14 -1.68 16 7 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 8 S -0.13 -3.49 21.44 -107.50 -2.30 -5.79 16 9 C -0.52 -15.08 9.50 30.94 0.29 -14.79 16 10 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 13 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.12 1.37 2.20 -67.83 -0.15 1.22 16 18 H 0.05 0.64 7.10 -51.93 -0.37 0.27 16 19 C -0.12 -1.04 6.56 -25.32 -0.17 -1.20 16 20 C -0.08 -0.69 6.77 -26.85 -0.18 -0.87 16 21 C -0.08 -0.90 6.14 -104.20 -0.64 -1.54 16 22 C -0.11 -1.18 10.04 -39.54 -0.40 -1.58 16 23 C -0.12 -1.20 10.05 -39.62 -0.40 -1.60 16 24 C -0.12 -1.36 10.05 -39.62 -0.40 -1.76 16 25 C -0.10 -1.21 8.30 -39.54 -0.33 -1.54 16 26 C -0.09 -1.06 5.10 -104.21 -0.53 -1.60 16 27 H 0.21 1.64 7.80 -54.10 -0.42 1.22 16 28 H 0.10 0.90 6.17 -51.93 -0.32 0.58 16 29 H 0.11 1.25 6.44 -51.92 -0.33 0.91 16 30 H 0.08 1.23 4.72 -51.93 -0.24 0.98 16 31 H 0.04 0.54 7.09 -51.93 -0.37 0.17 16 32 H 0.06 1.07 6.77 -51.93 -0.35 0.71 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.69 5.88 -51.93 -0.31 0.38 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.37 7.45 -52.49 -0.39 0.98 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -32.48 369.71 -11.33 -43.81 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.46 Total: 1.90 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: -2.80 Total: -29.33 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: -0.32 Total: -32.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.48 -11.33 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072515016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.533 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds