Wall clock time and date at job start Tue Mar 31 2020 11:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47390 * 325.75085 * 3 2 1 5 5 C 1.46905 * 110.99924 * 67.77694 * 4 3 2 6 6 C 1.52994 * 109.47245 * 69.78105 * 5 4 3 7 7 C 1.53000 * 109.47053 * 174.45620 * 6 5 4 8 8 S 1.81002 * 109.47208 * 180.02562 * 7 6 5 9 9 C 1.76193 * 100.00274 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99881 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00164 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99946 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99763 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47156 * 59.99954 * 13 11 9 15 15 H 1.48500 * 109.46837 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46867 * 299.99711 * 13 11 9 17 17 C 1.46901 * 111.00000 * 303.82189 * 4 3 2 18 18 H 1.09002 * 110.34169 * 61.14355 * 17 4 3 19 19 C 1.54345 * 110.30369 * 299.01591 * 17 4 3 20 20 C 1.54346 * 102.39100 * 267.42706 * 19 17 4 21 21 C 1.51368 * 105.16713 * 333.64682 * 20 19 17 22 22 C 1.38498 * 130.39037 * 197.17527 * 21 20 19 23 23 C 1.38102 * 120.21582 * 179.97438 * 22 21 20 24 24 C 1.38256 * 119.93657 * 0.03164 * 23 22 21 25 25 C 1.38106 * 119.93250 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.76281 * 17.19811 * 21 20 19 27 27 H 4.40882 * 5.52208 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47091 * 205.74987 * 3 2 1 29 29 H 1.09007 * 109.46949 * 85.75400 * 3 2 1 30 30 H 1.08995 * 109.47101 * 189.78486 * 5 4 3 31 31 H 1.09002 * 109.47085 * 309.78263 * 5 4 3 32 32 H 1.08997 * 109.47313 * 294.45856 * 6 5 4 33 33 H 1.09000 * 109.47327 * 54.45627 * 6 5 4 34 34 H 1.08997 * 109.47254 * 300.00272 * 7 6 5 35 35 H 1.08996 * 109.47329 * 60.00233 * 7 6 5 36 36 H 0.96996 * 119.99685 * 180.02562 * 12 11 9 37 37 H 1.08999 * 110.82029 * 149.19428 * 19 17 4 38 38 H 1.09006 * 110.99008 * 25.72520 * 19 17 4 39 39 H 1.09000 * 110.30277 * 214.73196 * 20 19 17 40 40 H 1.08991 * 110.39184 * 92.61517 * 20 19 17 41 41 H 1.07999 * 119.89053 * 0.02562 * 22 21 20 42 42 H 1.08000 * 120.03341 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.03260 * 180.25468 * 24 23 22 44 44 H 1.07996 * 119.88989 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.1439 0.7794 5 6 2.8232 -2.4118 0.1066 6 6 3.6769 -2.5433 -1.1562 7 6 3.4532 -3.9216 -1.7817 8 16 4.4638 -4.0776 -3.2752 9 6 4.0237 -5.7093 -3.7735 10 1 3.3170 -6.2801 -3.1894 11 6 4.5851 -6.2611 -4.9167 12 7 5.4467 -5.5655 -5.6283 13 14 4.1179 -7.9908 -5.4452 14 1 2.6558 -8.0534 -5.6975 15 1 4.8506 -8.3435 -6.6878 16 1 4.4764 -8.9507 -4.3703 17 6 2.5920 -1.1236 2.1438 18 1 1.5043 -1.1897 2.1189 19 6 3.0339 0.1604 2.8776 20 6 4.3249 -0.2938 3.5913 21 6 4.1646 -1.7860 3.7882 22 6 4.8371 -2.6577 4.6284 23 6 4.5153 -4.0007 4.6383 24 6 3.5192 -4.4776 3.8065 25 6 2.8475 -3.6099 2.9679 26 6 3.1690 -2.2629 2.9564 27 1 -1.0498 -0.0002 0.0004 28 1 3.0089 0.9264 0.4465 29 1 3.0093 -0.0753 -1.0249 30 1 3.0382 -3.2425 0.7787 31 1 1.7677 -2.4281 -0.1650 32 1 3.3920 -1.7700 -1.8695 33 1 4.7294 -2.4285 -0.8969 34 1 3.7381 -4.6949 -1.0683 35 1 2.4008 -4.0365 -2.0410 36 1 5.8387 -5.9510 -6.4274 37 1 2.2804 0.4722 3.6007 38 1 3.2442 0.9620 2.1695 39 1 4.4203 0.2067 4.5550 40 1 5.1958 -0.0857 2.9699 41 1 5.6151 -2.2859 5.2787 42 1 5.0413 -4.6778 5.2950 43 1 3.2634 -5.5268 3.8159 44 1 2.0693 -3.9831 2.3187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072515016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:50 Heat of formation + Delta-G solvation = 60.980831 kcal Electronic energy + Delta-G solvation = -23214.544581 eV Core-core repulsion = 20030.333538 eV Total energy + Delta-G solvation = -3184.211043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.48247 -38.91230 -36.15546 -34.66140 -34.51928 -33.04144 -31.88132 -29.94518 -28.29408 -28.08101 -27.49648 -24.93507 -23.54111 -22.42023 -21.51265 -21.28264 -19.56369 -18.80293 -17.66294 -17.37886 -16.90326 -16.69373 -16.34749 -16.10995 -15.92694 -15.44253 -15.22852 -14.81883 -14.72000 -14.18615 -14.12472 -13.85468 -13.61640 -13.45889 -13.32084 -13.06938 -12.89986 -12.65341 -12.56363 -12.37795 -12.21259 -12.06440 -11.87903 -11.79050 -11.62684 -11.34705 -11.28363 -11.14666 -10.97962 -10.34099 -9.80805 -9.58067 -9.33693 -8.67288 -8.37878 -6.14252 0.41826 0.49088 1.29977 1.39755 1.46369 1.70847 1.79625 1.88155 2.27327 2.73339 2.96118 3.07703 3.32249 3.43961 3.55846 3.57540 3.93527 4.05990 4.13997 4.15427 4.18180 4.23350 4.30144 4.41511 4.48482 4.53166 4.60706 4.63267 4.69263 4.77085 4.82684 4.85998 4.92000 5.03223 5.09263 5.14065 5.17234 5.23732 5.28483 5.31372 5.38245 5.54647 5.62048 5.75259 5.95360 6.02086 6.13678 6.16994 6.65702 7.03962 8.71415 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.003243 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.416503 B = 8631.560074 C = 9862.531895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.240 4.240 3 C 0.148 3.852 4 N -0.511 5.511 5 C 0.062 3.938 6 C -0.077 4.077 7 C -0.086 4.086 8 S -0.190 6.190 9 C -0.542 4.542 10 H 0.071 0.929 11 C 0.017 3.983 12 N -0.907 5.907 13 Si 0.992 3.008 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.265 1.265 17 C 0.123 3.877 18 H 0.043 0.957 19 C -0.110 4.110 20 C -0.072 4.072 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.136 4.136 25 C -0.119 4.119 26 C -0.108 4.108 27 H 0.238 0.762 28 H 0.123 0.877 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.355 11.343 22.161 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.241 4.241 3 C 0.022 3.978 4 N -0.233 5.233 5 C -0.067 4.067 6 C -0.116 4.116 7 C -0.235 4.235 8 S 0.039 5.961 9 C -0.690 4.690 10 H 0.089 0.911 11 C -0.188 4.188 12 N -0.543 5.543 13 Si 0.814 3.186 14 H -0.189 1.189 15 H -0.198 1.198 16 H -0.189 1.189 17 C 0.015 3.985 18 H 0.061 0.939 19 C -0.147 4.147 20 C -0.109 4.109 21 C -0.092 4.092 22 C -0.138 4.138 23 C -0.138 4.138 24 C -0.154 4.154 25 C -0.137 4.137 26 C -0.109 4.109 27 H 0.255 0.745 28 H 0.141 0.859 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.968 12.134 21.552 25.228 hybrid contribution -2.148 -2.247 -0.330 3.126 sum -7.116 9.888 21.222 24.470 Atomic orbital electron populations 1.25723 0.96945 0.99165 1.00072 1.24623 0.96470 1.01770 1.01267 1.19733 0.82232 0.95746 1.00097 1.62426 1.57499 1.02032 1.01358 1.22131 0.96841 0.92562 0.95164 1.21106 1.00820 0.93962 0.95689 1.23116 1.01158 1.00578 0.98682 1.84581 1.59975 1.22421 1.29147 1.23011 1.31212 1.00518 1.14224 0.91123 1.26051 0.94244 1.03295 0.95187 1.70143 1.28472 1.39229 1.16434 0.85093 0.78779 0.76795 0.77920 1.18946 1.19770 1.18932 1.21110 0.96063 0.93972 0.87325 0.93944 1.22419 0.97447 0.95646 0.99185 1.21017 0.98659 0.89657 1.01541 1.20910 0.95281 0.97318 0.95692 1.20941 1.00321 0.93110 0.99427 1.21370 0.97429 0.95814 0.99188 1.21282 0.97140 1.00149 0.96785 1.20841 1.00639 0.92826 0.99404 1.20539 0.98576 0.93828 0.97926 0.74509 0.85898 0.88413 0.90274 0.95043 0.91752 0.91386 0.92352 0.92470 0.91902 0.89674 0.88722 0.89014 0.89736 0.84194 0.83786 0.84764 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.09 19.25 74.32 1.43 -2.66 16 2 C -0.24 -5.44 10.71 31.12 0.33 -5.11 16 3 C 0.15 3.18 5.45 84.50 0.46 3.64 16 4 N -0.51 -12.35 4.56 -882.47 -4.02 -16.37 16 5 C 0.06 1.80 4.69 86.30 0.40 2.20 16 6 C -0.08 -2.65 5.11 30.59 0.16 -2.49 16 7 C -0.09 -3.64 5.67 71.98 0.41 -3.24 16 8 S -0.19 -10.40 21.44 -56.49 -1.21 -11.61 16 9 C -0.54 -32.09 9.50 67.95 0.65 -31.45 16 10 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 11 C 0.02 1.00 5.49 84.86 0.47 1.47 16 12 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 13 Si 0.99 44.56 29.55 68.60 2.03 46.59 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 C 0.12 2.67 2.20 44.84 0.10 2.77 16 18 H 0.04 1.00 7.10 -2.39 -0.02 0.99 16 19 C -0.11 -1.75 6.56 31.51 0.21 -1.54 16 20 C -0.07 -1.16 6.77 30.52 0.21 -0.95 16 21 C -0.09 -1.93 6.14 -19.59 -0.12 -2.05 16 22 C -0.12 -2.32 10.04 22.30 0.22 -2.09 16 23 C -0.12 -2.33 10.05 22.24 0.22 -2.10 16 24 C -0.14 -2.96 10.05 22.24 0.22 -2.74 16 25 C -0.12 -2.90 8.30 22.30 0.19 -2.71 16 26 C -0.11 -2.57 5.10 -19.59 -0.10 -2.67 16 27 H 0.24 3.18 7.80 -4.43 -0.03 3.15 16 28 H 0.12 2.00 6.17 -2.39 -0.01 1.99 16 29 H 0.10 2.25 6.44 -2.38 -0.02 2.24 16 30 H 0.08 2.36 4.72 -2.39 -0.01 2.35 16 31 H 0.03 0.94 7.09 -2.39 -0.02 0.92 16 32 H 0.06 2.20 6.77 -2.39 -0.02 2.18 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 35 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.31 5.88 -2.38 -0.01 1.30 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.11 2.72 7.45 -2.91 -0.02 2.70 16 Total: -1.00 -70.42 369.71 3.51 -66.91 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.98 Total: 21.41 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 5.45 Total: -51.72 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -3.74 Total: -71.57 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -10.40 SS G_CDS: -1.21 Total: -11.61 kcal Total: -70.42 3.51 -66.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072515016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.887 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds