Wall clock time and date at job start Tue Mar 31 2020 11:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46895 * 109.47524 * 318.28910 * 3 2 1 5 5 C 1.46900 * 111.00238 * 67.95639 * 4 3 2 6 6 C 1.53001 * 109.46999 * 70.17682 * 5 4 3 7 7 C 1.53002 * 109.47426 * 185.50264 * 6 5 4 8 8 S 1.81000 * 109.47135 * 180.02562 * 7 6 5 9 9 C 1.76202 * 99.99785 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99790 * 0.02562 * 9 8 7 11 11 C 1.38795 * 119.99828 * 180.02562 * 9 8 7 12 12 N 1.31634 * 119.99856 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00157 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46871 * 90.00089 * 13 11 9 15 15 H 1.48495 * 109.47353 * 209.99860 * 13 11 9 16 16 H 1.48504 * 109.47212 * 330.00489 * 13 11 9 17 17 C 1.46894 * 111.00188 * 191.91520 * 4 3 2 18 18 H 1.09000 * 110.34676 * 282.95367 * 17 4 3 19 19 C 1.54347 * 110.30709 * 45.07990 * 17 4 3 20 20 C 1.54343 * 102.39455 * 145.27269 * 19 17 4 21 21 C 1.51378 * 105.16968 * 333.65416 * 20 19 17 22 22 C 1.38498 * 130.38792 * 197.17530 * 21 20 19 23 23 C 1.38099 * 120.20945 * 179.97438 * 22 21 20 24 24 C 1.38258 * 119.93917 * 0.03415 * 23 22 21 25 25 C 1.38096 * 119.93138 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.75679 * 17.18889 * 21 20 19 27 27 H 4.40888 * 5.52126 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47052 * 198.28599 * 3 2 1 29 29 H 1.09001 * 109.46817 * 78.29226 * 3 2 1 30 30 H 1.08994 * 109.47532 * 190.18076 * 5 4 3 31 31 H 1.09002 * 109.47514 * 310.18421 * 5 4 3 32 32 H 1.09000 * 109.47382 * 305.50699 * 6 5 4 33 33 H 1.09006 * 109.46708 * 65.50633 * 6 5 4 34 34 H 1.09007 * 109.46592 * 300.00354 * 7 6 5 35 35 H 1.08995 * 109.46613 * 60.00043 * 7 6 5 36 36 H 0.97004 * 119.99754 * 179.97438 * 12 11 9 37 37 H 1.09001 * 110.81711 * 27.04450 * 19 17 4 38 38 H 1.09000 * 110.81996 * 263.50061 * 19 17 4 39 39 H 1.08997 * 110.30508 * 214.73100 * 20 19 17 40 40 H 1.08996 * 110.30468 * 92.57298 * 20 19 17 41 41 H 1.07995 * 119.89192 * 0.04106 * 22 21 20 42 42 H 1.08007 * 120.03075 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.03133 * 180.24981 * 24 23 22 44 44 H 1.08006 * 119.88809 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.0330 0.9215 5 6 2.8271 -2.3776 0.4170 6 6 3.6913 -2.6728 -0.8106 7 6 3.2742 -4.0140 -1.4174 8 16 4.2971 -4.3636 -2.8691 9 6 3.6220 -5.9179 -3.3519 10 1 2.8150 -6.3561 -2.7835 11 6 4.1275 -6.5791 -4.4626 12 7 3.6229 -7.7401 -4.8236 13 14 5.5229 -5.8209 -5.4461 14 1 6.8234 -6.2765 -4.8924 15 1 5.4143 -6.2429 -6.8657 16 1 5.4405 -4.3405 -5.3620 17 6 4.5767 -0.8805 1.1654 18 1 5.1469 -1.2565 0.3159 19 6 4.9217 0.6008 1.4284 20 6 6.0590 0.4968 2.4666 21 6 5.8271 -0.8193 3.1777 22 6 6.3224 -1.2872 4.3835 23 6 5.9674 -2.5410 4.8408 24 6 5.1155 -3.3326 4.0931 25 6 4.6208 -2.8677 2.8905 26 6 4.9755 -1.6106 2.4301 27 1 -1.0498 -0.0001 0.0004 28 1 3.0089 0.9766 0.3224 29 1 3.0094 -0.2077 -1.0063 30 1 3.0352 -3.1137 1.1934 31 1 1.7740 -2.4288 0.1406 32 1 3.5562 -1.8823 -1.5488 33 1 4.7394 -2.7182 -0.5146 34 1 3.4095 -4.8045 -0.6791 35 1 2.2262 -3.9686 -1.7132 36 1 3.9759 -8.2020 -5.6001 37 1 4.0644 1.1302 1.8443 38 1 5.2723 1.0846 0.5168 39 1 6.0021 1.3241 3.1740 40 1 7.0277 0.4912 1.9671 41 1 6.9875 -0.6693 4.9683 42 1 6.3551 -2.9029 5.7817 43 1 4.8337 -4.3117 4.4513 44 1 3.9556 -3.4868 2.3068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072515017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:53 Heat of formation + Delta-G solvation = 84.783510 kcal Electronic energy + Delta-G solvation = -23279.540951 eV Core-core repulsion = 20096.362070 eV Total energy + Delta-G solvation = -3183.178882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66893 -38.12624 -35.33931 -33.55063 -32.45086 -32.05868 -30.96133 -29.14831 -27.34284 -26.92176 -25.69601 -23.73624 -22.84036 -21.79503 -20.93999 -19.90467 -17.93082 -17.55488 -16.78802 -16.43695 -15.60855 -15.39501 -15.04539 -15.00534 -14.86329 -14.34879 -14.11056 -13.86611 -13.35961 -13.26497 -12.98312 -12.84896 -12.62029 -12.55940 -12.05316 -11.77875 -11.70005 -11.35569 -11.30356 -11.18750 -11.11215 -11.05172 -10.82411 -10.61586 -10.33251 -10.22360 -10.08440 -9.85141 -9.01933 -8.86849 -8.68419 -8.60426 -8.24568 -6.96326 -6.29505 -4.01999 1.28485 1.34785 2.67703 2.85008 2.99674 3.28418 3.43311 3.56384 3.66557 4.00203 4.23267 4.30103 4.33641 4.40665 4.74400 4.77693 4.89103 4.92950 4.98223 5.07272 5.09069 5.11775 5.24065 5.28085 5.38266 5.42250 5.44757 5.50806 5.58096 5.59702 5.64968 5.79059 5.87106 5.91858 5.96147 6.02842 6.09672 6.21345 6.34020 6.38738 6.47511 6.55886 6.61547 6.87699 6.92340 6.96897 7.61945 7.94361 8.43385 9.16399 10.80061 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.003510 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.652878 B = 7976.232160 C = 9036.802284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.149 3.851 4 N -0.520 5.520 5 C 0.046 3.954 6 C -0.139 4.139 7 C -0.077 4.077 8 S -0.219 6.219 9 C -0.501 4.501 10 H 0.088 0.912 11 C 0.092 3.908 12 N -0.882 5.882 13 Si 0.861 3.139 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.239 1.239 17 C 0.112 3.888 18 H 0.076 0.924 19 C -0.122 4.122 20 C -0.079 4.079 21 C -0.097 4.097 22 C -0.111 4.111 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.098 4.098 26 C -0.073 4.073 27 H 0.215 0.785 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.270 0.730 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 17.986 17.178 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.174 4.174 3 C 0.022 3.978 4 N -0.243 5.243 5 C -0.083 4.083 6 C -0.179 4.179 7 C -0.226 4.226 8 S 0.009 5.991 9 C -0.649 4.649 10 H 0.106 0.894 11 C -0.116 4.116 12 N -0.519 5.519 13 Si 0.686 3.314 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.163 1.163 17 C 0.005 3.995 18 H 0.094 0.906 19 C -0.159 4.159 20 C -0.116 4.116 21 C -0.097 4.097 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.139 4.139 25 C -0.116 4.116 26 C -0.074 4.074 27 H 0.232 0.768 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.934 18.503 17.019 25.310 hybrid contribution -0.251 -1.013 -0.799 1.314 sum 2.684 17.490 16.219 24.004 Atomic orbital electron populations 1.24848 0.95865 1.00348 1.01025 1.22770 0.94081 1.00503 1.00020 1.19183 0.85351 0.96923 0.96297 1.62404 1.13809 1.03000 1.45059 1.22556 1.00294 0.89563 0.95893 1.21998 1.00689 0.97505 0.97691 1.22944 1.01958 0.98180 0.99499 1.84133 1.51409 1.30203 1.33369 1.22112 1.23367 1.02533 1.16855 0.89411 1.24793 0.96519 0.94156 0.96152 1.69941 1.41544 1.14099 1.26268 0.86675 0.82653 0.82192 0.79836 1.19376 1.20084 1.16261 1.21323 0.88168 0.94799 0.95248 0.90632 1.22560 0.98721 0.95297 0.99336 1.21001 0.99055 0.94487 0.97066 1.20491 0.97954 0.96553 0.94721 1.20547 1.00650 0.96238 0.95494 1.21014 0.98697 0.94357 0.99888 1.21080 0.97998 0.99849 0.95012 1.20954 0.99438 0.95069 0.96169 1.20279 0.97140 0.94198 0.95741 0.76766 0.88165 0.91603 0.89618 0.90274 0.91455 0.91095 0.91392 0.91411 0.91975 0.89670 0.90288 0.90620 0.90116 0.86510 0.86142 0.85953 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 19.25 29.55 0.57 -1.71 16 2 C -0.17 -2.13 12.41 -37.12 -0.46 -2.59 16 3 C 0.15 1.63 5.03 -6.61 -0.03 1.60 16 4 N -0.52 -6.14 4.52 -230.29 -1.04 -7.18 16 5 C 0.05 0.60 5.02 -3.82 -0.02 0.58 16 6 C -0.14 -2.11 4.43 -26.73 -0.12 -2.23 16 7 C -0.08 -1.49 5.67 37.16 0.21 -1.28 16 8 S -0.22 -5.34 19.41 -107.50 -2.09 -7.43 16 9 C -0.50 -14.62 10.04 30.94 0.31 -14.31 16 10 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 11 C 0.09 2.70 5.50 -17.43 -0.10 2.61 16 12 N -0.88 -26.88 13.97 55.49 0.78 -26.10 16 13 Si 0.86 21.65 27.74 -169.99 -4.71 16.93 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 17 C 0.11 1.24 2.42 -67.83 -0.16 1.07 16 18 H 0.08 0.90 5.70 -51.93 -0.30 0.61 16 19 C -0.12 -1.04 5.10 -25.32 -0.13 -1.16 16 20 C -0.08 -0.66 6.77 -26.85 -0.18 -0.84 16 21 C -0.10 -1.04 6.14 -104.20 -0.64 -1.68 16 22 C -0.11 -1.11 10.04 -39.54 -0.40 -1.51 16 23 C -0.12 -1.21 10.05 -39.62 -0.40 -1.61 16 24 C -0.12 -1.33 10.05 -39.63 -0.40 -1.73 16 25 C -0.10 -1.21 9.47 -39.54 -0.37 -1.58 16 26 C -0.07 -0.87 5.76 -104.20 -0.60 -1.47 16 27 H 0.22 1.69 7.80 -54.10 -0.42 1.27 16 28 H 0.10 0.90 5.74 -51.93 -0.30 0.60 16 29 H 0.07 0.74 6.27 -51.93 -0.33 0.42 16 30 H 0.09 1.11 4.64 -51.93 -0.24 0.87 16 31 H 0.08 1.10 7.09 -51.93 -0.37 0.73 16 32 H 0.07 1.03 6.36 -51.93 -0.33 0.70 16 33 H 0.07 1.09 6.39 -51.93 -0.33 0.75 16 34 H 0.07 1.32 8.14 -51.91 -0.42 0.89 16 35 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 36 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.08 0.72 7.06 -51.93 -0.37 0.36 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.55 5.11 -52.48 -0.27 1.28 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -32.35 363.11 -10.72 -43.08 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.21 Total: 3.06 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.92 Total: -27.83 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: -0.27 Total: -33.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -2.09 Total: -7.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.35 -10.72 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072515017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.859 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds