Wall clock time and date at job start Tue Mar 31 2020 11:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46895 * 109.47524 * 318.28910 * 3 2 1 5 5 C 1.46900 * 111.00238 * 67.95639 * 4 3 2 6 6 C 1.53001 * 109.46999 * 70.17682 * 5 4 3 7 7 C 1.53002 * 109.47426 * 185.50264 * 6 5 4 8 8 S 1.81000 * 109.47135 * 180.02562 * 7 6 5 9 9 C 1.76202 * 99.99785 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99790 * 0.02562 * 9 8 7 11 11 C 1.38795 * 119.99828 * 180.02562 * 9 8 7 12 12 N 1.31634 * 119.99856 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00157 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46871 * 90.00089 * 13 11 9 15 15 H 1.48495 * 109.47353 * 209.99860 * 13 11 9 16 16 H 1.48504 * 109.47212 * 330.00489 * 13 11 9 17 17 C 1.46894 * 111.00188 * 191.91520 * 4 3 2 18 18 H 1.09000 * 110.34676 * 282.95367 * 17 4 3 19 19 C 1.54347 * 110.30709 * 45.07990 * 17 4 3 20 20 C 1.54343 * 102.39455 * 145.27269 * 19 17 4 21 21 C 1.51378 * 105.16968 * 333.65416 * 20 19 17 22 22 C 1.38498 * 130.38792 * 197.17530 * 21 20 19 23 23 C 1.38099 * 120.20945 * 179.97438 * 22 21 20 24 24 C 1.38258 * 119.93917 * 0.03415 * 23 22 21 25 25 C 1.38096 * 119.93138 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.75679 * 17.18889 * 21 20 19 27 27 H 4.40888 * 5.52126 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47052 * 198.28599 * 3 2 1 29 29 H 1.09001 * 109.46817 * 78.29226 * 3 2 1 30 30 H 1.08994 * 109.47532 * 190.18076 * 5 4 3 31 31 H 1.09002 * 109.47514 * 310.18421 * 5 4 3 32 32 H 1.09000 * 109.47382 * 305.50699 * 6 5 4 33 33 H 1.09006 * 109.46708 * 65.50633 * 6 5 4 34 34 H 1.09007 * 109.46592 * 300.00354 * 7 6 5 35 35 H 1.08995 * 109.46613 * 60.00043 * 7 6 5 36 36 H 0.97004 * 119.99754 * 179.97438 * 12 11 9 37 37 H 1.09001 * 110.81711 * 27.04450 * 19 17 4 38 38 H 1.09000 * 110.81996 * 263.50061 * 19 17 4 39 39 H 1.08997 * 110.30508 * 214.73100 * 20 19 17 40 40 H 1.08996 * 110.30468 * 92.57298 * 20 19 17 41 41 H 1.07995 * 119.89192 * 0.04106 * 22 21 20 42 42 H 1.08007 * 120.03075 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.03133 * 180.24981 * 24 23 22 44 44 H 1.08006 * 119.88809 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.0330 0.9215 5 6 2.8271 -2.3776 0.4170 6 6 3.6913 -2.6728 -0.8106 7 6 3.2742 -4.0140 -1.4174 8 16 4.2971 -4.3636 -2.8691 9 6 3.6220 -5.9179 -3.3519 10 1 2.8150 -6.3561 -2.7835 11 6 4.1275 -6.5791 -4.4626 12 7 3.6229 -7.7401 -4.8236 13 14 5.5229 -5.8209 -5.4461 14 1 6.8234 -6.2765 -4.8924 15 1 5.4143 -6.2429 -6.8657 16 1 5.4405 -4.3405 -5.3620 17 6 4.5767 -0.8805 1.1654 18 1 5.1469 -1.2565 0.3159 19 6 4.9217 0.6008 1.4284 20 6 6.0590 0.4968 2.4666 21 6 5.8271 -0.8193 3.1777 22 6 6.3224 -1.2872 4.3835 23 6 5.9674 -2.5410 4.8408 24 6 5.1155 -3.3326 4.0931 25 6 4.6208 -2.8677 2.8905 26 6 4.9755 -1.6106 2.4301 27 1 -1.0498 -0.0001 0.0004 28 1 3.0089 0.9766 0.3224 29 1 3.0094 -0.2077 -1.0063 30 1 3.0352 -3.1137 1.1934 31 1 1.7740 -2.4288 0.1406 32 1 3.5562 -1.8823 -1.5488 33 1 4.7394 -2.7182 -0.5146 34 1 3.4095 -4.8045 -0.6791 35 1 2.2262 -3.9686 -1.7132 36 1 3.9759 -8.2020 -5.6001 37 1 4.0644 1.1302 1.8443 38 1 5.2723 1.0846 0.5168 39 1 6.0021 1.3241 3.1740 40 1 7.0277 0.4912 1.9671 41 1 6.9875 -0.6693 4.9683 42 1 6.3551 -2.9029 5.7817 43 1 4.8337 -4.3117 4.4513 44 1 3.9556 -3.4868 2.3068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072515017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:53 Heat of formation + Delta-G solvation = 67.505203 kcal Electronic energy + Delta-G solvation = -23280.290195 eV Core-core repulsion = 20096.362070 eV Total energy + Delta-G solvation = -3183.928125 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48213 -39.03005 -36.15852 -34.72088 -34.58461 -33.11165 -31.78301 -29.94270 -28.26592 -28.05629 -27.74923 -24.88631 -23.64198 -22.87276 -21.68599 -20.81799 -19.68870 -18.76379 -17.70180 -17.27821 -17.13944 -16.70968 -16.34719 -15.93961 -15.91625 -15.62678 -15.09165 -14.95577 -14.93199 -14.30224 -14.06814 -13.95441 -13.73544 -13.50410 -13.43308 -13.19541 -12.98999 -12.75046 -12.53140 -12.38834 -12.12468 -12.04370 -11.94947 -11.85208 -11.66353 -11.51523 -11.20714 -11.17852 -10.99889 -10.64594 -9.68908 -9.49485 -9.19629 -9.03090 -8.54655 -6.26545 0.48528 0.53541 1.09362 1.29392 1.44552 1.70643 1.78859 1.96645 2.22009 2.64567 2.83368 2.84065 3.12214 3.49323 3.55149 3.60911 3.79133 3.95481 4.09782 4.11631 4.18564 4.23383 4.28858 4.32435 4.39848 4.43884 4.55224 4.59721 4.69648 4.75033 4.79769 4.91282 4.93217 4.98132 5.03705 5.14266 5.20117 5.22748 5.26731 5.32195 5.57880 5.66865 5.67525 5.77364 5.93998 6.03674 6.07092 6.17795 6.75264 6.89182 8.58683 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.003510 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.652878 B = 7976.232160 C = 9036.802284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.148 3.852 4 N -0.519 5.519 5 C 0.057 3.943 6 C -0.122 4.122 7 C -0.065 4.065 8 S -0.218 6.218 9 C -0.524 4.524 10 H 0.049 0.951 11 C 0.039 3.961 12 N -0.922 5.922 13 Si 0.926 3.074 14 H -0.261 1.261 15 H -0.262 1.262 16 H -0.229 1.229 17 C 0.110 3.890 18 H 0.065 0.935 19 C -0.116 4.116 20 C -0.075 4.075 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.122 4.122 26 C -0.095 4.095 27 H 0.241 0.759 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.277 0.723 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.132 0.868 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 20.612 17.925 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.208 4.208 3 C 0.022 3.978 4 N -0.241 5.241 5 C -0.073 4.073 6 C -0.162 4.162 7 C -0.214 4.214 8 S 0.010 5.990 9 C -0.671 4.671 10 H 0.067 0.933 11 C -0.166 4.166 12 N -0.560 5.560 13 Si 0.747 3.253 14 H -0.186 1.186 15 H -0.186 1.186 16 H -0.153 1.153 17 C 0.003 3.997 18 H 0.083 0.917 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.139 4.139 26 C -0.096 4.096 27 H 0.257 0.743 28 H 0.141 0.859 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.354 21.135 17.775 27.957 hybrid contribution -0.799 -1.855 -0.894 2.209 sum 3.555 19.280 16.881 25.871 Atomic orbital electron populations 1.25633 0.96837 0.99383 1.00005 1.23273 0.94998 1.01479 1.01019 1.19290 0.84975 0.97611 0.95952 1.62409 1.14664 1.02135 1.44932 1.22380 0.99203 0.90911 0.94791 1.21882 1.01146 0.94837 0.98340 1.23004 1.00699 1.00490 0.97206 1.83781 1.52378 1.26934 1.35944 1.22332 1.22814 1.05067 1.16908 0.93317 1.25785 0.99134 0.94538 0.97152 1.70042 1.43214 1.15594 1.27165 0.85711 0.79152 0.81750 0.78701 1.18564 1.18595 1.15263 1.21398 0.87184 0.96576 0.94552 0.91744 1.22586 0.98985 0.93414 1.00367 1.21056 0.99309 0.93743 0.97135 1.20871 0.97385 0.97435 0.94891 1.20905 1.00620 0.96476 0.95492 1.21345 0.98035 0.94345 1.00555 1.21308 0.98459 1.00666 0.94937 1.21054 1.00261 0.95632 0.96999 1.20501 0.98086 0.94432 0.96566 0.74270 0.85946 0.91957 0.89643 0.91102 0.91094 0.90910 0.91754 0.91953 0.91352 0.89454 0.88404 0.88875 0.89113 0.84128 0.83866 0.84991 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.24 19.25 74.32 1.43 -2.81 16 2 C -0.21 -4.86 12.41 31.12 0.39 -4.47 16 3 C 0.15 3.03 5.03 84.50 0.42 3.46 16 4 N -0.52 -11.79 4.52 -882.50 -3.99 -15.78 16 5 C 0.06 1.49 5.02 86.30 0.43 1.92 16 6 C -0.12 -3.66 4.43 30.60 0.14 -3.52 16 7 C -0.06 -2.54 5.67 71.98 0.41 -2.14 16 8 S -0.22 -10.64 19.41 -56.49 -1.10 -11.74 16 9 C -0.52 -31.41 10.04 67.95 0.68 -30.73 16 10 H 0.05 3.19 8.03 -2.91 -0.02 3.16 16 11 C 0.04 2.30 5.50 84.86 0.47 2.76 16 12 N -0.92 -57.39 13.97 21.65 0.30 -57.09 16 13 Si 0.93 44.47 27.74 68.60 1.90 46.37 16 14 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.23 -10.59 6.74 99.48 0.67 -9.92 16 17 C 0.11 2.29 2.42 44.84 0.11 2.40 16 18 H 0.07 1.47 5.70 -2.39 -0.01 1.46 16 19 C -0.12 -1.68 5.10 31.51 0.16 -1.52 16 20 C -0.08 -1.04 6.77 30.52 0.21 -0.83 16 21 C -0.11 -2.07 6.14 -19.59 -0.12 -2.19 16 22 C -0.12 -2.09 10.04 22.30 0.22 -1.87 16 23 C -0.12 -2.30 10.05 22.24 0.22 -2.08 16 24 C -0.14 -2.93 10.05 22.24 0.22 -2.70 16 25 C -0.12 -3.00 9.47 22.30 0.21 -2.79 16 26 C -0.10 -2.21 5.76 -19.59 -0.11 -2.32 16 27 H 0.24 3.33 7.80 -4.43 -0.03 3.29 16 28 H 0.12 1.92 5.74 -2.39 -0.01 1.90 16 29 H 0.06 1.32 6.27 -2.39 -0.01 1.31 16 30 H 0.09 2.27 4.64 -2.39 -0.01 2.26 16 31 H 0.07 1.98 7.09 -2.39 -0.02 1.96 16 32 H 0.07 2.09 6.36 -2.39 -0.02 2.08 16 33 H 0.07 2.19 6.39 -2.38 -0.02 2.17 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 36 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.09 1.24 7.06 -2.39 -0.02 1.23 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 43 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.12 2.97 5.11 -2.91 -0.01 2.96 16 Total: -1.00 -70.78 363.11 3.57 -67.21 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.96 Total: 20.44 kcal Atomic # 6 Polarization: -54.91 SS G_CDS: 5.49 Total: -49.42 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -3.69 Total: -72.87 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.10 Total: -11.74 kcal Total: -70.78 3.57 -67.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072515017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.717 kcal (2) G-P(sol) polarization free energy of solvation -70.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds